CsaV3_1G045250 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G045250
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 30962045 .. 30962362 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAAACAAATTAAGAACTGGAGTAGATATTGAACACATAAAATTGGTTGATAATGAAACCCAATTTGAAGCTTACCCATGGGGAAGAATAAGGTATCACGTTATGATAGATTTAATAAAAAGGTTTATAAAAAATACTTTAGCCTTAGCAATTGAAATTTTTGGATTTGCCTATGCATTTTTAGTTTGGGCGTATGAATGTATACCACTATTAACTAGAACTTCCATGTTTTGTGCTAAAAGAGTTGGTGATAGCAATTTGTGCATGCTAAATTGGATTGTGGATTGTCATCCAGAGTGGAAGGAATTGGCTGAAAAG

mRNA sequence

GAAAACAAATTAAGAACTGGAGTAGATATTGAACACATAAAATTGGTTGATAATGAAACCCAATTTGAAGCTTACCCATGGGGAAGAATAAGAGTTGGTGATAGCAATTTGTGCATGCTAAATTGGATTGTGGATTGTCATCCAGAGTGGAAGGAATTGGCTGAAAAG

Coding sequence (CDS)

GAAAACAAATTAAGAACTGGAGTAGATATTGAACACATAAAATTGGTTGATAATGAAACCCAATTTGAAGCTTACCCATGGGGAAGAATAAGAGTTGGTGATAGCAATTTGTGCATGCTAAATTGGATTGTGGATTGTCATCCAGAGTGGAAGGAATTGGCTGAAAAG

Protein sequence

ENKLRTGVDIEHIKLVDNETQFEAYPWGRIRVGDSNLCMLNWIVDCHPEWKELAEK
Homology
[Close]
BLAST of CsaV3_1G045250 vs. NCBI nr
Match: KGN44415.1 (hypothetical protein Csa_7G284410 [Cucumis sativus])

HSP 1 Score: 55.1 bits (131), Expect = 9.1e-05
Identity = 22/26 (84.62%), Postives = 23/26 (88.46%), Query Frame = 0 

Query: 31 RVGDSNLCMLNWIVDCHPEWKELAEK 57
          RV DSNLCMLNWIVD H EWKELAE+
Sbjct: 6  RVDDSNLCMLNWIVDTHQEWKELAER 31

[Close]
BLAST of CsaV3_1G045250 vs. TrEMBL
Match: tr|A0A0A0K3Z3|A0A0A0K3Z3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G284410 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 6.0e-05
Identity = 22/26 (84.62%), Postives = 23/26 (88.46%), Query Frame = 0 

Query: 31 RVGDSNLCMLNWIVDCHPEWKELAEK 57
          RV DSNLCMLNWIVD H EWKELAE+
Sbjct: 6  RVDDSNLCMLNWIVDTHQEWKELAER 31

The following BLAST results are available for this feature:
BLAST of CsaV3_1G045250 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN44415.19.1e-0584.62hypothetical protein Csa_7G284410 [Cucumis sativus][more]
BLAST of CsaV3_1G045250 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G045250 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G045250 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K3Z3|A0A0A0K3Z3_CUCSA6.0e-0584.62Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G284410 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G045250.1CsaV3_1G045250.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G045250Silver-seed gourdcarcucB0949
CsaV3_1G045250Cucumber (Gy14) v2cgybcucB001
CsaV3_1G045250Cucurbita maxima (Rimu)cmacucB0072
CsaV3_1G045250Cucurbita maxima (Rimu)cmacucB0099
CsaV3_1G045250Cucurbita moschata (Rifu)cmocucB0059
CsaV3_1G045250Cucurbita moschata (Rifu)cmocucB0090
CsaV3_1G045250Cucurbita pepo (Zucchini)cpecucB0799
CsaV3_1G045250Cucurbita pepo (Zucchini)cpecucB0874
CsaV3_1G045250Wild cucumber (PI 183967)cpicucB000
CsaV3_1G045250Bottle gourd (USVL1VR-Ls)cuclsiB068
CsaV3_1G045250Melon (DHL92) v3.5.1cucmeB044
CsaV3_1G045250Melon (DHL92) v3.6.1cucmedB041