CsaV3_1G044880 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G044880
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	polygalacturonase-like
Location	chr1 : 30343291 .. 30344763 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGATCATCCATCTTGACAACAACCATAGTTTGCTTTCATTGATTTTGTTAGTTGGATTAAGCAGTTGGAGTACTTTTGTTGATGCATCATCTTACAACGTTGTTGACTTTGGAGGCAAAGGTGATGGAACAACTGACTCAACACAAGCATTTCAAACGGCATGGACTAATGCTTGTGCCTCCACAAAAAAGGCCACTATTTATGTTCCACGAGGAAGATATTGCCTTCAAAATGTAACATTCAGCGGACCTTGCAAGAACAAGGCAATCATCTTTCGCATTGATGGCAGTATGGAAGCTCCCTCTGACTATCTAGTTATTGGAAACTCTGCGGCTTGGGTTGTGTTTAGGCATGTTGATGGAATGACTATCTTAGGTGGTAGTCTCGATGGAAAGGGAGCTGCGTTGTGGGCTTGCAAGAATTCTTCTTATAACGCTCTTTGCCCAACTGGAGCCACGGTATGCAAATTAACTAATCAATTTGTATCAAATTGGTTTATGTATATTCTTCATTAAATTTGTTGACTCTTGTGTTTGTGTGGATTACAGACCCTTGAATTCTCCAACTCAAAAAATGTGGTGGTCAATAACCTAAAATCACTTAATAGCCAAATGTTCCATGTAGCCATAAATGGCTGCGAAAATGTGATGGTTAAAGGCCTTAGGGTCTCAGCATCGAGTAATAGTCCTAATACCGACGGAATTCATGTGCAATCATCCTCTAATGTGACCATTATAAATTCCAAGATAGGAACTGGAGATGATTGCATTTCAGTTGGTCCTGGTGTTTCTAACTTACAAATTCAAAATATTTCCTGCGGACCTGGGCATGGAATAAGGTAAACATATATTTTTTATTATTATGATAATTTATATAATAAATTATTGGTAAATTCTTGTAAAATAATGTTTCGGCAATAATTTTGTTGGTTTAATTTACAGCATTGGTAGTCTCGGAAAAGATGTAAAAGAGATTGGGGTGCAAAATGTTACGATAAAGAATGTTGTATTTTCACGCACTGAAAATGGGGTACGAATCAAAACATGGGGGAAGCCAAGCAATGGGTTTGCTACTGACATTGTTTTCCAGCACATTGTAATGAACAATGTTCATAATCCAATTGTTATCGATCAAAATTATTGTCCAACTCACAAAGGCTGTCCAGGCCAGGTATGAATTTAATCAATTTAAGATGCTCTAATCATCAATTATATAAACTTTATTTTTCCTAATGTCTATATTATTTATAGGCTTCTGGAATTAAAATTAGTAATGTGACATACCAAGACATCCAGGGAACATCAACCACTAAAGTTGCAATCATGTTTGATTGTAGTCCGACAAATCCATGTATTGGAATAAAGTTAGAGAATGTAAGTCTTACGTATAAGAATCAAACGGCCGAAGCTAGATGTAACAATGCAAGAGGAATTGTAGTTGGTCAAGTTCAACCCACTGCTTGTCTCTGA

mRNA sequence

ATGGCGATCATCCATCTTGACAACAACCATAGTTTGCTTTCATTGATTTTGTTAGTTGGATTAAGCAGTTGGAGTACTTTTGTTGATGCATCATCTTACAACGTTGTTGACTTTGGAGGCAAAGGTGATGGAACAACTGACTCAACACAAGCATTTCAAACGGCATGGACTAATGCTTGTGCCTCCACAAAAAAGGCCACTATTTATGTTCCACGAGGAAGATATTGCCTTCAAAATGTAACATTCAGCGGACCTTGCAAGAACAAGGCAATCATCTTTCGCATTGATGGCAGTATGGAAGCTCCCTCTGACTATCTAGTTATTGGAAACTCTGCGGCTTGGGTTGTGTTTAGGCATGTTGATGGAATGACTATCTTAGGTGGTAGTCTCGATGGAAAGGGAGCTGCGTTGTGGGCTTGCAAGAATTCTTCTTATAACGCTCTTTGCCCAACTGGAGCCACGACCCTTGAATTCTCCAACTCAAAAAATGTGGTGGTCAATAACCTAAAATCACTTAATAGCCAAATCATTGGTAGTCTCGGAAAAGATGTAAAAGAGATTGGGGTGCAAAATGTTACGATAAAGAATGTTGTATTTTCACGCACTGAAAATGGGGTACGAATCAAAACATGGGGGAAGCCAAGCAATGGGTTTGCTACTGACATTGTTTTCCAGCACATTGTAATGAACAATGTTCATAATCCAATTGTTATCGATCAAAATTATTGTCCAACTCACAAAGGCTGTCCAGGCCAGGCTTCTGGAATTAAAATTAGTAATGTGACATACCAAGACATCCAGGGAACATCAACCACTAAAGTTGCAATCATGTTTGATTGTAGTCCGACAAATCCATGTATTGGAATAAAGTTAGAGAATGTAAGTCTTACGTATAAGAATCAAACGGCCGAAGCTAGATGTAACAATGCAAGAGGAATTGTAGTTGGTCAAGTTCAACCCACTGCTTGTCTCTGA

Coding sequence (CDS)

ATGGCGATCATCCATCTTGACAACAACCATAGTTTGCTTTCATTGATTTTGTTAGTTGGATTAAGCAGTTGGAGTACTTTTGTTGATGCATCATCTTACAACGTTGTTGACTTTGGAGGCAAAGGTGATGGAACAACTGACTCAACACAAGCATTTCAAACGGCATGGACTAATGCTTGTGCCTCCACAAAAAAGGCCACTATTTATGTTCCACGAGGAAGATATTGCCTTCAAAATGTAACATTCAGCGGACCTTGCAAGAACAAGGCAATCATCTTTCGCATTGATGGCAGTATGGAAGCTCCCTCTGACTATCTAGTTATTGGAAACTCTGCGGCTTGGGTTGTGTTTAGGCATGTTGATGGAATGACTATCTTAGGTGGTAGTCTCGATGGAAAGGGAGCTGCGTTGTGGGCTTGCAAGAATTCTTCTTATAACGCTCTTTGCCCAACTGGAGCCACGACCCTTGAATTCTCCAACTCAAAAAATGTGGTGGTCAATAACCTAAAATCACTTAATAGCCAAATCATTGGTAGTCTCGGAAAAGATGTAAAAGAGATTGGGGTGCAAAATGTTACGATAAAGAATGTTGTATTTTCACGCACTGAAAATGGGGTACGAATCAAAACATGGGGGAAGCCAAGCAATGGGTTTGCTACTGACATTGTTTTCCAGCACATTGTAATGAACAATGTTCATAATCCAATTGTTATCGATCAAAATTATTGTCCAACTCACAAAGGCTGTCCAGGCCAGGCTTCTGGAATTAAAATTAGTAATGTGACATACCAAGACATCCAGGGAACATCAACCACTAAAGTTGCAATCATGTTTGATTGTAGTCCGACAAATCCATGTATTGGAATAAAGTTAGAGAATGTAAGTCTTACGTATAAGAATCAAACGGCCGAAGCTAGATGTAACAATGCAAGAGGAATTGTAGTTGGTCAAGTTCAACCCACTGCTTGTCTCTGA

Protein sequence

MAIIHLDNNHSLLSLILLVGLSSWSTFVDASSYNVVDFGGKGDGTTDSTQAFQTAWTNACASTKKATIYVPRGRYCLQNVTFSGPCKNKAIIFRIDGSMEAPSDYLVIGNSAAWVVFRHVDGMTILGGSLDGKGAALWACKNSSYNALCPTGATTLEFSNSKNVVVNNLKSLNSQIIGSLGKDVKEIGVQNVTIKNVVFSRTENGVRIKTWGKPSNGFATDIVFQHIVMNNVHNPIVIDQNYCPTHKGCPGQASGIKISNVTYQDIQGTSTTKVAIMFDCSPTNPCIGIKLENVSLTYKNQTAEARCNNARGIVVGQVQPTACL

Homology

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BLAST of CsaV3_1G044880 vs. NCBI nr
Match: XP_004142600.1 (PREDICTED: polygalacturonase-like [Cucumis sativus] >KGN66713.1 hypothetical protein Csa_1G662770 [Cucumis sativus])

HSP 1 Score: 624.4 bits (1609), Expect = 2.2e-175
Identity = 323/399 (80.95%), Postives = 324/399 (81.20%), Query Frame = 0


Query: 1   MAIIHLDNNHSLLSLILLVGLSSWSTFVDASSYNVVDFGGKGDGTTDSTQAFQTAWTNAC 60
           MAIIHLDNNHSLLSLILLVGLSSWSTFVDASSYNVVDFGGKGDGTTDSTQAFQTAWTNAC
Sbjct: 1   MAIIHLDNNHSLLSLILLVGLSSWSTFVDASSYNVVDFGGKGDGTTDSTQAFQTAWTNAC 60

Query: 61  ASTKKATIYVPRGRYCLQNVTFSGPCKNKAIIFRIDGSMEAPSDYLVIGNSAAWVVFRHV 120
           ASTKKATIYVPRGRYCLQNVTFSGPCKNKAIIFRIDGSMEAPSDYLVIGNSAAWVVFRHV
Sbjct: 61  ASTKKATIYVPRGRYCLQNVTFSGPCKNKAIIFRIDGSMEAPSDYLVIGNSAAWVVFRHV 120

Query: 121 DGMTILGGSLDGKGAALWACKNSSYNALCPTGATTLEFSNSKNVVVNNLKSLNSQI---- 180
           DGMTILGGSLDGKGAALWACKNSSYNALCPTGATTLEFSNSKNVVVNNLKSLNSQ+    
Sbjct: 121 DGMTILGGSLDGKGAALWACKNSSYNALCPTGATTLEFSNSKNVVVNNLKSLNSQMFHVA 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 INGCENVMVKGLRVSASSNSPNTDGIHVQSSSNVTIINSKIGTGDDCISVGPGVSNLQIQ 240

Query: 241 -----------IGSLGKDVKEIGVQNVTIKNVVFSRTENGVRIKTWGKPSNGFATDIVFQ 300
                      IGSLGKDVKEIGVQNVTIKNVVFSRTENGVRIKTWGKPSNGFATDIVFQ
Sbjct: 241 NISCGPGHGISIGSLGKDVKEIGVQNVTIKNVVFSRTENGVRIKTWGKPSNGFATDIVFQ 300

Query: 301 HIVMNNVHNPIVIDQNYCPTHKGCPGQASGIKISNVTYQDIQGTSTTKVAIMFDCSPTNP 325
           HIVMNNVHNPIVIDQNYCPTHKGCPGQASGIKISNVTYQDIQGTSTTKVAIMFDCSPTNP
Sbjct: 301 HIVMNNVHNPIVIDQNYCPTHKGCPGQASGIKISNVTYQDIQGTSTTKVAIMFDCSPTNP 360

[Close]

BLAST of CsaV3_1G044880 vs. NCBI nr
Match: XP_008443755.1 (PREDICTED: polygalacturonase-like [Cucumis melo])

HSP 1 Score: 551.6 bits (1420), Expect = 1.8e-153
Identity = 278/398 (69.85%), Postives = 301/398 (75.63%), Query Frame = 0


Query: 1   MAIIHLDNNHSLLSLILLVGLSSWSTFVDASSYNVVDFGGKGDGTTDSTQAFQTAWTNAC 60
           M II LDNNHSLL  I LVGLS+WS FV+ SSYNVV+FGGKGDGTTDSTQAFQ AW NAC
Sbjct: 1   MTIIQLDNNHSLLLFIFLVGLSNWSIFVETSSYNVVNFGGKGDGTTDSTQAFQMAWANAC 60

Query: 61  ASTKKATIYVPRGRYCLQNVTFSGPCKNKAIIFRIDGSMEAPSDYLVIGNSAAWVVFRHV 120
           AST+K TIYVPRGRY ++NVTFSGPC NK IIFRIDG++EAPSD++VIGNS AW++FRHV
Sbjct: 61  ASTEKVTIYVPRGRYYIKNVTFSGPCNNKGIIFRIDGTLEAPSDFVVIGNSEAWILFRHV 120

Query: 121 DGMTILGGSLDGKGAALWACKNSSYNALCPTGATTLEFSNSKNVVVNNLKSLNSQI---- 180
           DG+TILGG+LDG GAALWACKNSSYN LCPTGATTLEFSNSKNVV+NNLKSLNSQ+    
Sbjct: 121 DGITILGGNLDGHGAALWACKNSSYNTLCPTGATTLEFSNSKNVVINNLKSLNSQMFHIT 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 INGCKNVIIKGLRVSASSNSPNTDGIHVQSSSNVTIINSKIGTGDDCISVGPGISNLQIE 240

Query: 241 -----------IGSLGKDVKEIGVQNVTIKNVVFSRTENGVRIKTWGKPSNGFATDIVFQ 300
                      IGSLGKDV EIGVQNVT+KNVVFSRT+NGVRIKTWGKPSNGFAT+I+FQ
Sbjct: 241 NISCGPGHGISIGSLGKDVTEIGVQNVTVKNVVFSRTKNGVRIKTWGKPSNGFATNIIFQ 300

Query: 301 HIVMNNVHNPIVIDQNYCPTHKGCPGQASGIKISNVTYQDIQGTSTTKVAIMFDCSPTNP 324
           HIVMNNVHNPIVIDQNYCPTHK CPG+ASGIKISNVTYQDI GTSTT VAIMFDCSPTNP
Sbjct: 301 HIVMNNVHNPIVIDQNYCPTHKACPGKASGIKISNVTYQDIHGTSTTTVAIMFDCSPTNP 360

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BLAST of CsaV3_1G044880 vs. NCBI nr
Match: XP_022927887.1 (polygalacturonase-like [Cucurbita moschata])

HSP 1 Score: 394.4 bits (1012), Expect = 3.7e-106
Identity = 204/386 (52.85%), Postives = 251/386 (65.03%), Query Frame = 0


Query: 15  LILLVGLSSWSTF-VDASSYNVVDFGGKGDGTTDSTQAFQTAWTNACASTKKATIYVPRG 74
           ++ LV +   STF   +SSYNVV FG K +  +DSTQAFQ AW  ACASTK A+IYVPRG
Sbjct: 9   VLFLVSMFLHSTFAASSSSYNVVSFGAKPNNQSDSTQAFQAAWAKACASTKSASIYVPRG 68

Query: 75  RYCLQNVTFSGPCKNKAIIFRIDGSMEAPSDYLVIGNSAAWVVFRHVDGMTILGGSLDGK 134
           RY L++VTF+GPCKN AI  RIDGS+ APSD+ VIGN  AW++FRHVDG+TI GG LDG+
Sbjct: 69  RYYLRSVTFNGPCKNNAISMRIDGSLVAPSDFRVIGNLVAWIMFRHVDGVTISGGILDGQ 128

Query: 135 GAALWACKNSSYNALCPTGATTLEFSNSKNVVVNNLKSLNSQI----------------- 194
           G  LWACKNS+    CP GATTLEFSNSKN+ +  L SLNSQ+                 
Sbjct: 129 GTGLWACKNST--KACPNGATTLEFSNSKNIAITGLTSLNSQMFHVVVNDCQNLKIKGLK 188

Query: 195 ----------------------------------------------------------IG 254
                                                                     IG
Sbjct: 189 IIASGDSPNTDGIHVEQSSNVTILNSHIGTGDDCISIGPGTSDMWIENIVCKPGHGISIG 248

Query: 255 SLGKDVKEIGVQNVTIKNVVFSRTENGVRIKTWGKPSNGFATDIVFQHIVMNNVHNPIVI 314
           SLGK+++E GVQN+T+K  +FS T+NGVRIKTWGKPSNGFAT+I+FQ I+M+NV NPI+I
Sbjct: 249 SLGKNLEEAGVQNITVKKALFSHTQNGVRIKTWGKPSNGFATNILFQKIIMDNVKNPIII 308

Query: 315 DQNYCPTHKGCPGQASGIKISNVTYQDIQGTSTTKVAIMFDCSPTNPCIGIKLENVSLT- 324
           DQNYCP HK C  QASG++ISNVTYQDI GTS T++A+ FDCSPTNPC+ I+LE+++LT 
Sbjct: 309 DQNYCPNHKDCSTQASGVQISNVTYQDIHGTSATQIAVKFDCSPTNPCVQIRLEDINLTS 368

[Close]

BLAST of CsaV3_1G044880 vs. NCBI nr
Match: XP_023531798.1 (polygalacturonase-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 394.4 bits (1012), Expect = 3.7e-106
Identity = 204/386 (52.85%), Postives = 251/386 (65.03%), Query Frame = 0


Query: 15  LILLVGLSSWSTF-VDASSYNVVDFGGKGDGTTDSTQAFQTAWTNACASTKKATIYVPRG 74
           ++ LV +   STF   +SSYNVV FG K D  +DSTQAFQ AW  ACASTK A+IYVPRG
Sbjct: 9   VLFLVSMFLDSTFAASSSSYNVVSFGAKPDNQSDSTQAFQAAWAKACASTKSASIYVPRG 68

Query: 75  RYCLQNVTFSGPCKNKAIIFRIDGSMEAPSDYLVIGNSAAWVVFRHVDGMTILGGSLDGK 134
           RY L++VTF+GPCKN AI  RIDGS+ APSD+ VIGN  AW++FRHVDG+TI GG LDG+
Sbjct: 69  RYYLRSVTFNGPCKNNAISMRIDGSLVAPSDFRVIGNLVAWIMFRHVDGVTISGGILDGQ 128

Query: 135 GAALWACKNSSYNALCPTGATTLEFSNSKNVVVNNLKSLNSQI----------------- 194
           G  LWACKNS+    CP GATTLEFSN+KN+ +  L SLNSQ+                 
Sbjct: 129 GTGLWACKNST--KACPNGATTLEFSNAKNIAITGLTSLNSQMFHVVVNDCQNFKIKGLK 188

Query: 195 ----------------------------------------------------------IG 254
                                                                     IG
Sbjct: 189 IIASGDSPNTDGIHVEQSSNVTILNSHVGTGDDCISIGPGTSDMWIENIVCKPGHGISIG 248

Query: 255 SLGKDVKEIGVQNVTIKNVVFSRTENGVRIKTWGKPSNGFATDIVFQHIVMNNVHNPIVI 314
           SLGK+++E GV+N+T+K  +FS T+NGVRIKTWGKPSNGFAT+I+FQ I+M+NV NPI+I
Sbjct: 249 SLGKNLEEAGVRNITVKKALFSHTQNGVRIKTWGKPSNGFATNILFQKIIMDNVKNPIII 308

Query: 315 DQNYCPTHKGCPGQASGIKISNVTYQDIQGTSTTKVAIMFDCSPTNPCIGIKLENVSLT- 324
           DQNYCP HK C  QASG+KISNVTYQDI GTS T++A+ FDCSPTNPC+ I+LE+++LT 
Sbjct: 309 DQNYCPNHKDCSTQASGVKISNVTYQDIHGTSATQIAVKFDCSPTNPCVQIRLEDINLTS 368

[Close]

BLAST of CsaV3_1G044880 vs. NCBI nr
Match: XP_022989662.1 (polygalacturonase-like [Cucurbita maxima])

HSP 1 Score: 393.3 bits (1009), Expect = 8.2e-106
Identity = 200/376 (53.19%), Postives = 245/376 (65.16%), Query Frame = 0


Query: 24  WSTFVDASSYNVVDFGGKGDGTTDSTQAFQTAWTNACASTKKATIYVPRGRYCLQNVTFS 83
           +S+   A S NVVD G K DG +DST+AF+TAW NAC ST+  +IYVP GRY L+++TF+
Sbjct: 18  YSSSAIAFSNNVVDLGAKPDGKSDSTKAFETAWANACGSTRPTSIYVPPGRYYLRSLTFN 77

Query: 84  GPCKNKAIIFRIDGSMEAPSDYLVIGNSAAWVVFRHVDGMTILGGSLDGKGAALWACKNS 143
           GPCKN AI  RIDG++ APSDY VIGNSAAW++FR VDG+TI GG  DGKG+ LWACKNS
Sbjct: 78  GPCKNNAIFIRIDGTLVAPSDYRVIGNSAAWILFRRVDGVTISGGVFDGKGSGLWACKNS 137

Query: 144 SYNALCPTGATTLEFSNSKNVVVNNLKSLNSQI--------------------------- 203
           +    CP+GATT+E SNSKNVV++ L SLNSQ+                           
Sbjct: 138 T--RTCPSGATTIEISNSKNVVLSALTSLNSQMFHIVVNGCQNIKMKGLVVLASGNSPNT 197

Query: 204 ------------------------------------------------IGSLGKDVKEIG 263
                                                           IGSL KD++E G
Sbjct: 198 DGIHVQLSSDVTILNSKIGTGDDCISIGPGTSSLWVENIVCGPGHGISIGSLAKDLEEAG 257

Query: 264 VQNVTIKNVVFSRTENGVRIKTWGKPSNGFATDIVFQHIVMNNVHNPIVIDQNYCPTHKG 323
           VQNVTIK  +FSRT+NGVRIK WG+PSNGF  +I+FQHIVM+NV NPIVIDQNYCP+HK 
Sbjct: 258 VQNVTIKKALFSRTQNGVRIKAWGRPSNGFVKNILFQHIVMDNVQNPIVIDQNYCPSHKD 317

Query: 324 CPGQASGIKISNVTYQDIQGTSTTKVAIMFDCSPTNPCIGIKLENVSLTYKNQTAEARCN 325
           CPGQASG+KIS VTYQDI GTS T++A+ FDCSPTNPC GIK+E+V L+YK+Q A A C 
Sbjct: 318 CPGQASGVKISGVTYQDIHGTSATQIAVKFDCSPTNPCSGIKMEDVQLSYKDQIAGATCR 377

[Close]

BLAST of CsaV3_1G044880 vs. TAIR10
Match: AT2G43870.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 323.6 bits (828), Expect = 1.4e-88
Identity = 181/390 (46.41%), Postives = 226/390 (57.95%), Query Frame = 0


Query: 11  SLLSLILLVGLSSWSTFVDASSYNVVDFGGKGDGTTDSTQAFQTAWTNACASTKKATIYV 70
           SLL L +   +SS S    A SYNV+ FG K DG TD+T+AF   W  ACAS++  TI V
Sbjct: 3   SLLVLFVFFFISSCS----AQSYNVLSFGAKPDGKTDATKAFMAVWQTACASSRPVTIVV 62

Query: 71  PRGRYCLQNVTFSG-PCKNKAIIFRIDGSMEAPSDYLVIGNSAAWVVFRHVDGMTILGGS 130
           P+GR+ L++VTF G  CK K + FRIDG++ AP+DY VIGN   W+ F+H+DG+T+ GG 
Sbjct: 63  PKGRFLLRSVTFDGSKCKPKPVTFRIDGTLVAPADYRVIGNEDYWIFFQHLDGITVYGGV 122

Query: 131 LDGKGAALWACKNSSYNALCPTGATTLEFSNSKNVVVNNLKSLNSQI------------- 190
           LD +GA+LW CK S  N  CP+GATT+ F +S NVVV+ L SLNSQ+             
Sbjct: 123 LDARGASLWDCKKSGKN--CPSGATTIGFQSSSNVVVSGLTSLNSQMFHVVINGCNNVKL 182

Query: 191 ------------------------------------------------------------ 250
                                                                       
Sbjct: 183 QGVKVLAAGNSPNTDGIHVQSSSSVSIFNTKISTGDDCVSIGPGTNGLWIENVACGPGHG 242

Query: 251 --IGSLGKDVKEIGVQNVTIKNVVFSRTENGVRIKTWGKPSNGFATDIVFQHIVMNNVHN 310
             IGSLGKD  E GVQNVT+K V F+ T+NGVRIK+W +PS+GFA +I FQH VMNNV N
Sbjct: 243 ISIGSLGKDSVESGVQNVTVKTVTFTGTDNGVRIKSWARPSSGFAKNIRFQHCVMNNVEN 302

Query: 311 PIVIDQNYCPTHKGCPGQASGIKISNVTYQDIQGTSTTKVAIMFDCSPTNPCIGIKLENV 325
           PI+IDQNYCP H  CP Q SGIKIS+V + DI GTS T+V +  DCS   PC GI+LE+V
Sbjct: 303 PIIIDQNYCPDH-DCPRQVSGIKISDVLFVDIHGTSATEVGVKLDCSSKKPCTGIRLEDV 362

[Close]

BLAST of CsaV3_1G044880 vs. TAIR10
Match: AT3G59850.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 323.2 bits (827), Expect = 1.9e-88
Identity = 170/391 (43.48%), Postives = 229/391 (58.57%), Query Frame = 0


Query: 10  HSLLSLILLVGLSSWSTFVDASSYNVVDFGGKGDGTTDSTQAFQTAWTNACASTKKATIY 69
           HS L ++LL  LS  S+   A +YN++ +G K DG TDST+AF   W  ACAS K  TI 
Sbjct: 2   HSSLLIVLLFLLSVSSS--SAQTYNILSYGAKPDGKTDSTKAFTVLWAKACASVKPVTIL 61

Query: 70  VPRGRYCLQNVTFSG-PCKNKAIIFRIDGSMEAPSDYLVIGNSAAWVVFRHVDGMTILGG 129
           VP+GR+ L+++ F G  CK K++ FRI G++ APSDY VIG    W++F+H+DG+++ GG
Sbjct: 62  VPKGRFLLRSIIFDGSKCKRKSVTFRIQGTLVAPSDYRVIGKENYWILFQHLDGISVYGG 121

Query: 130 SLDGKGAALWACKNSSYNALCPTGATTLEFSNSKNVVVNNLKSLNSQI------------ 189
            LD +GA+LW+CK S  N  CP+GAT++ F +S+NVV++ L SLNSQ+            
Sbjct: 122 VLDAQGASLWSCKKSGKN--CPSGATSIGFQSSRNVVISGLTSLNSQMFHVAINGCSNVK 181

Query: 190 ------------------------------------------------------------ 249
                                                                       
Sbjct: 182 LDGVKVSADGNSPNTDGIHVQSSSTVSILNSKISTGDDCVSIGPGTNGLWIENVACGPGH 241

Query: 250 ---IGSLGKDVKEIGVQNVTIKNVVFSRTENGVRIKTWGKPSNGFATDIVFQHIVMNNVH 309
              IGSLGK+  E+GVQN+T+K   F+ TENGVRIK+W +PSNGFA +I FQH VMNNV 
Sbjct: 242 GISIGSLGKESVEVGVQNITVKTATFTGTENGVRIKSWARPSNGFAKNIRFQHCVMNNVQ 301

Query: 310 NPIVIDQNYCPTHKGCPGQASGIKISNVTYQDIQGTSTTKVAIMFDCSPTNPCIGIKLEN 325
           NPIVIDQNYCP ++ CP Q SGIKIS+V + DI GTS T+V +  DCS   PC GI++++
Sbjct: 302 NPIVIDQNYCPGNENCPNQVSGIKISDVMFFDIHGTSATEVGVKLDCSSKKPCTGIRIQD 361

[Close]

BLAST of CsaV3_1G044880 vs. TAIR10
Match: AT2G43890.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 290.0 bits (741), Expect = 1.8e-78
Identity = 149/369 (40.38%), Postives = 212/369 (57.45%), Query Frame = 0


Query: 31  SSYNVVDFGGKGDGTTDSTQAFQTAWTNACASTKKATIYVPRGRYCLQNVTFSGPCKNKA 90
           S+YNVV FG K DG TDST+AF  AW  AC S    T+ VPRG + L+ V F GPC+++ 
Sbjct: 27  SNYNVVSFGAKPDGRTDSTKAFLGAWQAACRSAAAVTVTVPRGSFLLKPVEFRGPCRSR- 86

Query: 91  IIFRIDGSMEAPSDYLVIGNSAAWVVFRHVDGMTILGGSLDGKGAALWACKNSSYNALCP 150
           I F+I G++ APSDY  +GNS  W++F  V+ ++I+GG+LD +GA+ WAC+ S  +  CP
Sbjct: 87  ITFQIYGTIVAPSDYRGLGNSGYWILFVKVNRISIIGGTLDARGASFWACRKSGKS--CP 146

Query: 151 TGATTLEFSNSKNVVVNNLKSLNSQI---------------------------------- 210
            GA ++ F+ + +VVV+ L S+NSQ                                   
Sbjct: 147 VGARSMTFNWANDVVVSGLTSINSQTTHLVINSCNNVIVRKVKLVAPDQSPNTDGLHVQG 206

Query: 211 -----------------------------------------IGSLGKDVKEIGVQNVTIK 270
                                                    IGSLG+D  E GV+N+T+ 
Sbjct: 207 SAGVTVTDGTFHTGDDCISIGPGTRNLYMSKLNCGPGHGISIGSLGRDANEAGVENITLI 266

Query: 271 NVVFSRTENGVRIKTWGKPSNGFATDIVFQHIVMNNVHNPIVIDQNYCPTHKGCPGQASG 325
           N VFS ++NGVRIKTW + S GF  +++FQ+++M NV NPI++DQNYCP+++GCP Q SG
Sbjct: 267 NSVFSGSDNGVRIKTWARQSTGFVRNVLFQNLIMKNVQNPIIVDQNYCPSNQGCPKQGSG 326

[Close]

BLAST of CsaV3_1G044880 vs. TAIR10
Match: AT2G43880.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 282.7 bits (722), Expect = 2.8e-76
Identity = 142/368 (38.59%), Postives = 209/368 (56.79%), Query Frame = 0


Query: 32  SYNVVDFGGKGDGTTDSTQAFQTAWTNACASTKKATIYVPRGRYCLQNVTFSGPCKNKAI 91
           S+NV  +G +GDG  D+T++F TAW+ AC S  +A +YVPRG Y ++N+ F GPCKN  I
Sbjct: 30  SFNVQRYGARGDGRADATKSFLTAWSLACGSRARAMVYVPRGTYLVKNLVFWGPCKN-II 89

Query: 92  IFRIDGSMEAPSDYLVIGNSAAWVVFRHVDGMTILGGSLDGKGAALWACKNSSYNALCPT 151
            F+ DG++ AP++Y  IGNS  W++F  V+ +++ GG++D +GA  W+C+    +  CP 
Sbjct: 90  TFKNDGTLVAPANYWDIGNSGYWILFAKVNRISVYGGTIDARGAGYWSCRKKGSH--CPQ 149

Query: 152 GATTLEFSNSKNVVVNNLKSLNSQ------------------------------------ 211
           GA ++ FS   NV+++ L S NSQ                                    
Sbjct: 150 GARSISFSWCNNVLLSGLSSFNSQNMHVTVHHSSNVRIENVRIRAPSGSPNTDGIHVQSS 209

Query: 212 ---------------------------------------IIGSLGKDVKEIGVQNVTIKN 271
                                                   IGSLG    E GVQNVT+ +
Sbjct: 210 SGVTISGGTIATGDDCIALSQGSRNIWIERVNCGPGHGISIGSLGDYANEEGVQNVTVTS 269

Query: 272 VVFSRTENGVRIKTWGKPSNGFATDIVFQHIVMNNVHNPIVIDQNYCPTHKGCPGQASGI 325
            VF++T+NGVRIKTW +PS GF  ++VF++++MNNV NP++IDQNYCP  KGCP Q+SG+
Sbjct: 270 SVFTKTQNGVRIKTWARPSRGFVNNVVFRNLIMNNVENPVIIDQNYCPNGKGCPRQSSGV 329

[Close]

BLAST of CsaV3_1G044880 vs. TAIR10
Match: AT1G05650.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 273.5 bits (698), Expect = 1.7e-73
Identity = 143/380 (37.63%), Postives = 208/380 (54.74%), Query Frame = 0


Query: 26  TFVDASS-----YNVVDFGGKGDGTTDSTQAFQTAWTNACASTKKATIYVPRGRYCLQNV 85
           TF+D SS     +NVV FG K DG TDST AF  AW  AC S   AT+ VP G + L+ +
Sbjct: 16  TFIDVSSSASIVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSAASATVVVPTGTFLLKVI 75

Query: 86  TFSGPCKNKAIIFRIDGSMEAPSDYLVIGNSAAWVVFRHVDGMTILGGSLDGKGAALWAC 145
           TF GPCK+K I F++ G++ AP DY   GNS +W++F  V+  +++GG+ D +G+  W+C
Sbjct: 76  TFGGPCKSK-ITFQVTGTVVAPEDYRTFGNSGSWILFNKVNRFSLVGGTFDARGSGFWSC 135

Query: 146 KNSSYNALCPTGATTLEFSNSKNVVVNNLKSLNSQI------------------------ 205
           + S  N  CP G  ++ F+++K+V+++ +KS+NSQ+                        
Sbjct: 136 RKSGQN--CPPGVRSISFNSAKDVIISGVKSMNSQVSHMTLNGCTNVAVRNIRLVAPGDS 195

Query: 206 ---------------------------------------------------IGSLGKDVK 265
                                                              IGSL K + 
Sbjct: 196 PNTDGFTVQFSTGVTLTGSTVQTGDDCVAIGQGTRNFLISKLACGPGHGVSIGSLAKQLN 255

Query: 266 EIGVQNVTIKNVVFSRTENGVRIKTWGKPSNGFATDIVFQHIVMNNVHNPIVIDQNYCPT 325
           E GV+NVT+ + VF+ ++NGVRIK+W +PS GF  ++ FQ+++M NV NPI+IDQNYCP+
Sbjct: 256 EDGVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQNLIMRNVQNPIIIDQNYCPS 315

[Close]

BLAST of CsaV3_1G044880 vs. Swiss-Prot
Match: sp|P48979|PGLR_PRUPE (Polygalacturonase OS=Prunus persica OX=3760 PE=2 SV=1)

HSP 1 Score: 362.5 bits (929), Expect = 5.0e-99
Identity = 192/392 (48.98%), Postives = 236/392 (60.20%), Query Frame = 0


Query: 8   NNHSLLSLILLVGLSSWSTFVDASSYNVVDFGGKGDGTTDSTQAFQTAWTNACASTKKAT 67
           N  SL SL L+      S      +YNV   G K DG TDST+AF +AW  ACAS     
Sbjct: 3   NRRSLFSLSLIFVFMINSAIASPLTYNVASLGAKADGKTDSTKAFLSAWAKACASMNPGV 62

Query: 68  IYVPRGRYCLQNVTFSGPCKNKAIIFRIDGSMEAPSDYLVIGNSAAWVVFRHVDGMTILG 127
           IYVP G + L++V FSGPCKN AI FRI G++ APSDY VIGN+A W+ F HV+G+TI G
Sbjct: 63  IYVPAGTFFLRDVVFSGPCKNNAITFRIAGTLVAPSDYRVIGNAANWIFFHHVNGVTISG 122

Query: 128 GSLDGKGAALWACKNSSYNALCPTGATTLEFSNSKNVVVNNLKSLNSQI----------- 187
           G LDG+G ALWACK + +   CP+GATTL FS+S N+VV+ L SLNSQ+           
Sbjct: 123 GILDGQGTALWACK-ACHGESCPSGATTLGFSDSNNIVVSGLASLNSQMFHIVINDFQNV 182

Query: 188 ------------------------------------------------------------ 247
                                                                       
Sbjct: 183 QMQGVRVSRSGNSPNTDGIHVQMSSGVTILNSKIATGDDCVSIGPGTSNLWIEGVACGPG 242

Query: 248 ----IGSLGKDVKEIGVQNVTIKNVVFSRTENGVRIKTWGKPSNGFATDIVFQHIVMNNV 307
               IGSLGK+ +E GVQNVT+K V FS T+NG+RIK+WG+PS GFA +I+FQH  M NV
Sbjct: 243 HGISIGSLGKEQEEAGVQNVTVKTVTFSGTQNGLRIKSWGRPSTGFARNILFQHATMVNV 302

Query: 308 HNPIVIDQNYCPTHKGCPGQASGIKISNVTYQDIQGTSTTKVAIMFDCSPTNPCIGIKLE 325
            NPIVIDQ+YCP +KGCPGQ SG++IS+VTY+DI GTS T+VA+ FDCSP +PC  IKLE
Sbjct: 303 ENPIVIDQHYCPDNKGCPGQVSGVQISDVTYEDIHGTSATEVAVKFDCSPKHPCREIKLE 362

[Close]

BLAST of CsaV3_1G044880 vs. Swiss-Prot
Match: sp|O22818|PGLR6_ARATH (Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana OX=3702 GN=At2g43860 PE=2 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 6.4e-70
Identity = 152/370 (41.08%), Postives = 197/370 (53.24%), Query Frame = 0


Query: 31  SSYNVVDFGGKGDGTTDSTQAFQTAWTNACASTKKATIYVPRGRYCLQNVTFSG-PCKNK 90
           S+ NV+ +G K DG+ DST+AF  AW  ACAS    TI VP+GR+ + N+ F G  CK  
Sbjct: 31  STLNVLSYGAKPDGSKDSTKAFLAAWDVACASANPTTIIVPKGRFLVGNLVFHGNECKQA 90

Query: 91  AIIFRIDGSMEAPSDYLVIGNSAAWVVFRHVDGMTILGGSLDGKGAALWACKNSSYNALC 150
            I  RI GS+ AP D+ +I +S  W+ F  V  ++I GG LD +G +LW CKN+  +  C
Sbjct: 91  PISIRIAGSIVAPEDFRIIASSKHWIWFEDVTDVSIYGGILDAQGTSLWKCKNNGGHN-C 150

Query: 151 PTGATTLEFSNSKNVVVNNLKSLNSQ---------------------------------- 210
           PTGA +L FS S N+ ++ L S+NSQ                                  
Sbjct: 151 PTGAKSLVFSGSNNIKISGLTSINSQKFHIVIDNSNNVNIDGVKVSADENSPNTDGIHVE 210

Query: 211 -----------------------------------------IIGSLGKDVKEIGVQNVTI 270
                                                     IGSLG+  +E GV NVT+
Sbjct: 211 SSHSVHITNSRIGTGDDCISIGPGSTNVFIQTIRCGPGHGISIGSLGRAEEEQGVDNVTV 270

Query: 271 KNVVFSRTENGVRIKTWGKPSNGFATDIVFQHIVMNNVHNPIVIDQNYCPTHKGCPGQAS 325
            NV F  T NGVRIKTWGK SN FA +IVFQHI M  V NPI+IDQ+YC  HK CP Q S
Sbjct: 271 SNVDFMGTNNGVRIKTWGKDSNSFARNIVFQHINMKMVKNPIIIDQHYC-LHKPCPKQES 330

[Close]

BLAST of CsaV3_1G044880 vs. Swiss-Prot
Match: sp|P35336|PGLR_ACTDE (Polygalacturonase OS=Actinidia deliciosa OX=3627 PE=2 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.0e-46
Identity = 132/375 (35.20%), Postives = 178/375 (47.47%), Query Frame = 0


Query: 28  VDAS-SYNVVDFGGKGDGTTDSTQAFQTAWTNACASTKKATIYVPRGRYCLQNVTFSGPC 87
           +DAS + NV DFG KGDG  D T+AF+ AW  AC+ST  A + VP+  Y ++ ++FSGPC
Sbjct: 84  LDASKTVNVDDFGAKGDG-RDDTKAFEKAWKAACSSTSSAVLLVPKKNYLVRPISFSGPC 143

Query: 88  KNKAIIFRIDGSMEAP---SDYLVIGNSAAWVVFRHVDGMTIL-GGSLDGKGAALWACKN 147
           K+  +  +I G++EA    SDY   G    W+VF  V  + +  GG+++G G   W    
Sbjct: 144 KS-GLTMQIYGTIEASDDRSDYRKDGRH--WLVFDSVQNLRVEGGGTINGNGKIWWQNSC 203

Query: 148 SSYNAL-CPTGATTLEFSNSKNVVVNNLKSLNSQ-------------------------- 207
            +  AL C    T L F  SK+V+V NLK  N+Q                          
Sbjct: 204 KTNKALPCKDAPTALTFYKSKHVIVKNLKIENAQQIHVSFDNCVNVQASNLMVTAPENSP 263

Query: 208 -------------------------------------------------IIGSLGKDVKE 267
                                                             IGSLG    E
Sbjct: 264 NTDGIHVTGTQNIHISSCVIGTGDDCISIVNGSRKVRVNDITCGPGHGISIGSLGYGNSE 323

Query: 268 IGVQNVTIKNVVFSRTENGVRIKTWGKPSNGFATDIVFQHIVMNNVHNPIVIDQNYCPTH 321
             V +V +       T NGVRIKTW +  +G A++I FQ++ M+NV NPI+IDQNYC   
Sbjct: 324 AHVSDVVVNGAKLCGTTNGVRIKTW-QGGSGSASNIKFQNVEMHNVENPIIIDQNYCDQD 383

[Close]

BLAST of CsaV3_1G044880 vs. Swiss-Prot
Match: sp|Q9SFB7|QRT2_ARATH (Polygalacturonase QRT2 OS=Arabidopsis thaliana OX=3702 GN=QRT2 PE=1 SV=2)

HSP 1 Score: 186.8 bits (473), Expect = 3.8e-46
Identity = 131/372 (35.22%), Postives = 181/372 (48.66%), Query Frame = 0


Query: 32  SYNVVDFGGKGDGTTDSTQAFQTAWTNACASTKKATIYVPRGR-YCLQNVTFSGPCKNKA 91
           S+NV  FG K +G  DS +AF  AW  AC+ST    I  P+ R Y L+ VTFSGPCK+  
Sbjct: 70  SFNVNTFGAKANGNDDS-KAFMKAWEAACSSTGIVYIVAPKNRDYMLKAVTFSGPCKSSL 129

Query: 92  IIFRIDGSMEA---PSDYLVIGNSAAWVVFRHVDGMTILGGS-LDGKGAALW--ACK-NS 151
           IIF+I G +EA   PSDY        W+VF +V+ + + GG  +DG G   W  +CK N 
Sbjct: 130 IIFKIYGRIEAWENPSDY---KERRHWIVFENVNNLRVEGGGRIDGNGHIWWPKSCKINP 189

Query: 152 SYNAL-CPTGATTLEFSNSK--NVVV-------------NNLKSLNSQI----------- 211
               L  PT  T +E +N +  N+ +              N+K+LN  +           
Sbjct: 190 QLPCLGAPTAVTFVECNNLRVSNIRLENAQQMHLTFQDCKNVKALNLMVTSPADSPNTDG 249

Query: 212 ----------------------------------------------IGSLGKDVKEIGVQ 271
                                                         IGSLG+D  E  V 
Sbjct: 250 IHVSGTQNILIQDSIVRTGDDCISIVSGSENVRATGITCGPGHGISIGSLGEDNSEAYVS 309

Query: 272 NVTIKNVVFSRTENGVRIKTWGKPSNGFATDIVFQHIVMNNVHNPIVIDQNYCPTHKGCP 321
           NV +       T NGVRIKTW +  +G A +I+FQ I+M NV NPI+I+Q+YC   + CP
Sbjct: 310 NVVVNKATLIGTTNGVRIKTW-QGGHGMAKNIIFQDIIMKNVTNPIIINQDYCDRVEACP 369

[Close]

BLAST of CsaV3_1G044880 vs. Swiss-Prot
Match: sp|P05117|PGLR_SOLLC (Polygalacturonase-2 OS=Solanum lycopersicum OX=4081 GN=PG2 PE=1 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.0e-43
Identity = 121/356 (33.99%), Postives = 168/356 (47.19%), Query Frame = 0


Query: 34  NVVDFGGKGDGTTDSTQAFQTAWTNACASTKKATIYVPRGR-YCLQNVTFSGPCKNKAII 93
           NV+ FG KGDG T    AF+ AW  AC+S       VP+ + Y L+ +TFSGPC++ +I 
Sbjct: 77  NVLSFGAKGDGKTYDNIAFEQAWNEACSSRTPVQFVVPKNKNYLLKQITFSGPCRS-SIS 136

Query: 94  FRIDGSMEAPSDYLVIGNSAAWVVFRHVDGMTI-LGGSLDGKGAALW--ACKNSSYNALC 153
            +I GS+EA S      +   W+ F  V  + +  GG+++G G   W  +CK +  +  C
Sbjct: 137 VKIFGSLEASSKISDYKDRRLWIAFDSVQNLVVGGGGTINGNGQVWWPSSCKINK-SLPC 196

Query: 154 PTGATTLEFSNSKNVVVNNLKSLNSQ---------------------------------- 213
               T L F N KN+ VNNLKS N+Q                                  
Sbjct: 197 RDAPTALTFWNCKNLKVNNLKSKNAQQIHIKFESCTNVVASNLMINASAKSPNTDGVHVS 256

Query: 214 -----------------------------------------IIGSLGKDVKEIGVQNVTI 273
                                                     IGSLG    E  V NVT+
Sbjct: 257 NTQYIQISDTIIGTGDDCISIVSGSQNVQATNITCGPGHGISIGSLGSGNSEAYVSNVTV 316

Query: 274 KNVVFSRTENGVRIKTWGKPSNGFATDIVFQHIVMNNVHNPIVIDQNYCPTHKGCPGQAS 310
                   ENGVRIKTW +  +G A++I F ++ M +V  PI+IDQNYC   + C  Q S
Sbjct: 317 NEAKIIGAENGVRIKTW-QGGSGQASNIKFLNVEMQDVKYPIIIDQNYCDRVEPCIQQFS 376

[Close]

BLAST of CsaV3_1G044880 vs. TrEMBL
Match: tr|A0A0A0LY60|A0A0A0LY60_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G662770 PE=3 SV=1)

HSP 1 Score: 624.4 bits (1609), Expect = 1.4e-175
Identity = 323/399 (80.95%), Postives = 324/399 (81.20%), Query Frame = 0


Query: 1   MAIIHLDNNHSLLSLILLVGLSSWSTFVDASSYNVVDFGGKGDGTTDSTQAFQTAWTNAC 60
           MAIIHLDNNHSLLSLILLVGLSSWSTFVDASSYNVVDFGGKGDGTTDSTQAFQTAWTNAC
Sbjct: 1   MAIIHLDNNHSLLSLILLVGLSSWSTFVDASSYNVVDFGGKGDGTTDSTQAFQTAWTNAC 60

Query: 61  ASTKKATIYVPRGRYCLQNVTFSGPCKNKAIIFRIDGSMEAPSDYLVIGNSAAWVVFRHV 120
           ASTKKATIYVPRGRYCLQNVTFSGPCKNKAIIFRIDGSMEAPSDYLVIGNSAAWVVFRHV
Sbjct: 61  ASTKKATIYVPRGRYCLQNVTFSGPCKNKAIIFRIDGSMEAPSDYLVIGNSAAWVVFRHV 120

Query: 121 DGMTILGGSLDGKGAALWACKNSSYNALCPTGATTLEFSNSKNVVVNNLKSLNSQI---- 180
           DGMTILGGSLDGKGAALWACKNSSYNALCPTGATTLEFSNSKNVVVNNLKSLNSQ+    
Sbjct: 121 DGMTILGGSLDGKGAALWACKNSSYNALCPTGATTLEFSNSKNVVVNNLKSLNSQMFHVA 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 INGCENVMVKGLRVSASSNSPNTDGIHVQSSSNVTIINSKIGTGDDCISVGPGVSNLQIQ 240

Query: 241 -----------IGSLGKDVKEIGVQNVTIKNVVFSRTENGVRIKTWGKPSNGFATDIVFQ 300
                      IGSLGKDVKEIGVQNVTIKNVVFSRTENGVRIKTWGKPSNGFATDIVFQ
Sbjct: 241 NISCGPGHGISIGSLGKDVKEIGVQNVTIKNVVFSRTENGVRIKTWGKPSNGFATDIVFQ 300

Query: 301 HIVMNNVHNPIVIDQNYCPTHKGCPGQASGIKISNVTYQDIQGTSTTKVAIMFDCSPTNP 325
           HIVMNNVHNPIVIDQNYCPTHKGCPGQASGIKISNVTYQDIQGTSTTKVAIMFDCSPTNP
Sbjct: 301 HIVMNNVHNPIVIDQNYCPTHKGCPGQASGIKISNVTYQDIQGTSTTKVAIMFDCSPTNP 360

[Close]

BLAST of CsaV3_1G044880 vs. TrEMBL
Match: tr|A0A1S3B8A7|A0A1S3B8A7_CUCME (polygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103487271 PE=3 SV=1)

HSP 1 Score: 551.6 bits (1420), Expect = 1.2e-153
Identity = 278/398 (69.85%), Postives = 301/398 (75.63%), Query Frame = 0


Query: 1   MAIIHLDNNHSLLSLILLVGLSSWSTFVDASSYNVVDFGGKGDGTTDSTQAFQTAWTNAC 60
           M II LDNNHSLL  I LVGLS+WS FV+ SSYNVV+FGGKGDGTTDSTQAFQ AW NAC
Sbjct: 1   MTIIQLDNNHSLLLFIFLVGLSNWSIFVETSSYNVVNFGGKGDGTTDSTQAFQMAWANAC 60

Query: 61  ASTKKATIYVPRGRYCLQNVTFSGPCKNKAIIFRIDGSMEAPSDYLVIGNSAAWVVFRHV 120
           AST+K TIYVPRGRY ++NVTFSGPC NK IIFRIDG++EAPSD++VIGNS AW++FRHV
Sbjct: 61  ASTEKVTIYVPRGRYYIKNVTFSGPCNNKGIIFRIDGTLEAPSDFVVIGNSEAWILFRHV 120

Query: 121 DGMTILGGSLDGKGAALWACKNSSYNALCPTGATTLEFSNSKNVVVNNLKSLNSQI---- 180
           DG+TILGG+LDG GAALWACKNSSYN LCPTGATTLEFSNSKNVV+NNLKSLNSQ+    
Sbjct: 121 DGITILGGNLDGHGAALWACKNSSYNTLCPTGATTLEFSNSKNVVINNLKSLNSQMFHIT 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 INGCKNVIIKGLRVSASSNSPNTDGIHVQSSSNVTIINSKIGTGDDCISVGPGISNLQIE 240

Query: 241 -----------IGSLGKDVKEIGVQNVTIKNVVFSRTENGVRIKTWGKPSNGFATDIVFQ 300
                      IGSLGKDV EIGVQNVT+KNVVFSRT+NGVRIKTWGKPSNGFAT+I+FQ
Sbjct: 241 NISCGPGHGISIGSLGKDVTEIGVQNVTVKNVVFSRTKNGVRIKTWGKPSNGFATNIIFQ 300

Query: 301 HIVMNNVHNPIVIDQNYCPTHKGCPGQASGIKISNVTYQDIQGTSTTKVAIMFDCSPTNP 324
           HIVMNNVHNPIVIDQNYCPTHK CPG+ASGIKISNVTYQDI GTSTT VAIMFDCSPTNP
Sbjct: 301 HIVMNNVHNPIVIDQNYCPTHKACPGKASGIKISNVTYQDIHGTSTTTVAIMFDCSPTNP 360

[Close]

BLAST of CsaV3_1G044880 vs. TrEMBL
Match: tr|B9SSX1|B9SSX1_RICCO (Polygalacturonase, putative OS=Ricinus communis OX=3988 GN=RCOM_1267820 PE=3 SV=1)

HSP 1 Score: 381.7 bits (979), Expect = 1.6e-102
Identity = 198/392 (50.51%), Postives = 249/392 (63.52%), Query Frame = 0


Query: 8   NNHSLLSLILLVGLSSWSTFVDASSYNVVDFGGKGDGTTDSTQAFQTAWTNACASTKKAT 67
           ++ S L+L++L+  SS +T   A+ YNV+ +G K DG TDST+AF  AWT AC STK  T
Sbjct: 7   SSFSFLALLILLFTSSLAT---AAQYNVLSYGAKPDGRTDSTKAFLAAWTQACGSTKPPT 66

Query: 68  IYVPRGRYCLQNVTFSGPCKNKAIIFRIDGSMEAPSDYLVIGNSAAWVVFRHVDGMTILG 127
           IYVP G++ L++++F GPCKN AI+FRIDG++ APSDY VIGN+  W+ F+HV+G+TI G
Sbjct: 67  IYVPSGKFFLKDLSFGGPCKNNAILFRIDGTLVAPSDYKVIGNAGYWLYFQHVNGVTISG 126

Query: 128 GSLDGKGAALWACKNSSYNALCPTGATTLEFSNSKNVVVNNLKSLNSQI----------- 187
           G LDG+G+ LWACK S  N  CP+GAT+L FSNSKN+ +N L S NSQ+           
Sbjct: 127 GILDGQGSGLWACKASGKN--CPSGATSLGFSNSKNIAINGLTSQNSQMFHIVINGCQNV 186

Query: 188 ------------------------------------------------------------ 247
                                                                       
Sbjct: 187 KVQGVTVSASGDSPNTDGIHVQQSGGVTILNSKIRTGDDCISIGPGATNLWIENIACGPG 246

Query: 248 ----IGSLGKDVKEIGVQNVTIKNVVFSRTENGVRIKTWGKPSNGFATDIVFQHIVMNNV 307
               IGSLGKD++E GVQNVT+K V F+ T+NGVRIK+WG+PS+GFA +I+FQH +M NV
Sbjct: 247 HGISIGSLGKDLQEAGVQNVTVKTVTFTGTQNGVRIKSWGRPSSGFARNILFQHAIMTNV 306

Query: 308 HNPIVIDQNYCPTHKGCPGQASGIKISNVTYQDIQGTSTTKVAIMFDCSPTNPCIGIKLE 325
            NPIVIDQNYCP +K CPGQ SG+KIS VTYQDI GTS T+VA+ FDCS   PC GIKLE
Sbjct: 307 QNPIVIDQNYCPDNKNCPGQESGVKISGVTYQDIHGTSATEVAVKFDCSKKEPCTGIKLE 366

[Close]

BLAST of CsaV3_1G044880 vs. TrEMBL
Match: tr|A0A2N9FN09|A0A2N9FN09_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16153 PE=3 SV=1)

HSP 1 Score: 377.5 bits (968), Expect = 3.1e-101
Identity = 200/385 (51.95%), Postives = 240/385 (62.34%), Query Frame = 0


Query: 15  LILLVGLSSWSTFVDASSYNVVDFGGKGDGTTDSTQAFQTAWTNACASTKKATIYVPRGR 74
           ++ L+ +   S      +YNVV  G K DG TDSTQAF +AWT ACAS K ATI+VP GR
Sbjct: 9   ILALLSIFLSSALAAPMTYNVVSLGAKADGKTDSTQAFLSAWTKACASLKPATIFVPAGR 68

Query: 75  YCLQNVTFSGPCKNKAIIFRIDGSMEAPSDYLVIGNSAAWVVFRHVDGMTILGGSLDGKG 134
           + L+ V FSGPCKN AII RIDG++ APSDY VIGNS  W++F +V+G+TI GG LDGKG
Sbjct: 69  FYLRQVAFSGPCKNNAIIIRIDGTLVAPSDYKVIGNSGNWLLFENVNGVTISGGILDGKG 128

Query: 135 AALWACKNSSYNALCPTGATTLEFSNSKNVVVNNLKSLNSQI------------------ 194
             LWACK S  +  CP+GATTL FSNS N+VV+ L SLNSQ+                  
Sbjct: 129 TGLWACKASGKS--CPSGATTLGFSNSNNIVVSALTSLNSQMFHIVVNGCHNVKMQGVKV 188

Query: 195 ---------------------------------------------------------IGS 254
                                                                    IGS
Sbjct: 189 IASGNSPNTDGIHVQLSSSITILNSKIQTGDDCISIGPGTTNLWIENVACGPGHGISIGS 248

Query: 255 LGKDVKEIGVQNVTIKNVVFSRTENGVRIKTWGKPSNGFATDIVFQHIVMNNVHNPIVID 314
           LGKD +E GVQNVT+K V F+ T+NGVRIK+WG+PSNGFA +I+FQH+VM N  NPIVID
Sbjct: 249 LGKDQQEAGVQNVTVKTVTFTGTQNGVRIKSWGRPSNGFARNILFQHVVMVNAQNPIVID 308

Query: 315 QNYCPTHKGCPGQASGIKISNVTYQDIQGTSTTKVAIMFDCSPTNPCIGIKLENVSLTYK 325
           QNYCP +KGCPGQ SG+KIS+VT+QDI GTS T++A+ FDCS  NPC  I+LENV LTYK
Sbjct: 309 QNYCPGNKGCPGQVSGVKISDVTFQDIHGTSATEIAMKFDCSSGNPCSRIRLENVKLTYK 368

[Close]

BLAST of CsaV3_1G044880 vs. TrEMBL
Match: tr|A0A2P4LTC4|A0A2P4LTC4_QUESU (Polygalacturonase OS=Quercus suber OX=58331 GN=CFP56_55710 PE=3 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 4.0e-101
Identity = 197/370 (53.24%), Postives = 231/370 (62.43%), Query Frame = 0


Query: 30  ASSYNVVDFGGKGDGTTDSTQAFQTAWTNACASTKKATIYVPRGRYCLQNVTFSGPCKNK 89
           A +YNVV  G K DGTTDSTQAF +AWT AC ST  A IYVP GR+ L+ V F+GPC N 
Sbjct: 15  AMTYNVVSLGAKADGTTDSTQAFVSAWTKACGSTNPAMIYVPVGRFYLRQVVFNGPCNNN 74

Query: 90  AIIFRIDGSMEAPSDYLVIGNSAAWVVFRHVDGMTILGGSLDGKGAALWACKNSSYNALC 149
           AII RI G++ APSDY V+GN+A W+VF HVDG+TI GG LD +G ALWACK S     C
Sbjct: 75  AIIMRIAGTLVAPSDYSVLGNTANWLVFEHVDGVTISGGVLDAQGTALWACKASGNT--C 134

Query: 150 PTGATTLEFSNSKNVVVNNLKSLNSQI--------------------------------- 209
           P GATTLEFSNS N+VV+ L SLNSQ+                                 
Sbjct: 135 PAGATTLEFSNSNNIVVSALSSLNSQMFHIVVNGCQNVKMQGIGVTADGNSPNTDGIHVQ 194

Query: 210 ------------------------------------------IGSLGKDVKEIGVQNVTI 269
                                                     IGSLGKD +E GVQNVT+
Sbjct: 195 LSSSVTILDSKIKTGDDCISIGPGTTNLWIENVECGPGHGISIGSLGKDQEEAGVQNVTV 254

Query: 270 KNVVFSRTENGVRIKTWGKPSNGFATDIVFQHIVMNNVHNPIVIDQNYCPTHKGCPGQAS 325
           K V F+ T+NGVRIK+WG+PSNGFA +I+FQH VM NV NPIVIDQNYCP +KGCPGQ S
Sbjct: 255 KTVTFTNTQNGVRIKSWGRPSNGFAENILFQHAVMMNVQNPIVIDQNYCPNNKGCPGQVS 314

The following BLAST results are available for this feature:

BLAST of CsaV3_1G044880 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004142600.1	2.2e-175	80.95	PREDICTED: polygalacturonase-like [Cucumis sativus] >KGN66713.1 hypothetical pro...	[more]
XP_008443755.1	1.8e-153	69.85	PREDICTED: polygalacturonase-like [Cucumis melo]	[more]
XP_022927887.1	3.7e-106	52.85	polygalacturonase-like [Cucurbita moschata]	[more]
XP_023531798.1	3.7e-106	52.85	polygalacturonase-like [Cucurbita pepo subsp. pepo]	[more]
XP_022989662.1	8.2e-106	53.19	polygalacturonase-like [Cucurbita maxima]	[more]

BLAST of CsaV3_1G044880 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G43870.1	1.4e-88	46.41	Pectin lyase-like superfamily protein	[more]
AT3G59850.1	1.9e-88	43.48	Pectin lyase-like superfamily protein	[more]
AT2G43890.1	1.8e-78	40.38	Pectin lyase-like superfamily protein	[more]
AT2G43880.1	2.8e-76	38.59	Pectin lyase-like superfamily protein	[more]
AT1G05650.1	1.7e-73	37.63	Pectin lyase-like superfamily protein	[more]

BLAST of CsaV3_1G044880 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P48979\|PGLR_PRUPE	5.0e-99	48.98	Polygalacturonase OS=Prunus persica OX=3760 PE=2 SV=1	[more]
sp\|O22818\|PGLR6_ARATH	6.4e-70	41.08	Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana OX=3702 GN=At2g4386...	[more]
sp\|P35336\|PGLR_ACTDE	1.0e-46	35.20	Polygalacturonase OS=Actinidia deliciosa OX=3627 PE=2 SV=1	[more]
sp\|Q9SFB7\|QRT2_ARATH	3.8e-46	35.22	Polygalacturonase QRT2 OS=Arabidopsis thaliana OX=3702 GN=QRT2 PE=1 SV=2	[more]
sp\|P05117\|PGLR_SOLLC	1.0e-43	33.99	Polygalacturonase-2 OS=Solanum lycopersicum OX=4081 GN=PG2 PE=1 SV=1	[more]

BLAST of CsaV3_1G044880 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LY60\|A0A0A0LY60_CUCSA	1.4e-175	80.95	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G662770 PE=3 SV=1	[more]
tr\|A0A1S3B8A7\|A0A1S3B8A7_CUCME	1.2e-153	69.85	polygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103487271 PE=3 SV=1	[more]
tr\|B9SSX1\|B9SSX1_RICCO	1.6e-102	50.51	Polygalacturonase, putative OS=Ricinus communis OX=3988 GN=RCOM_1267820 PE=3 SV=...	[more]
tr\|A0A2N9FN09\|A0A2N9FN09_FAGSY	3.1e-101	51.95	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16153 PE=3 SV=1	[more]
tr\|A0A2P4LTC4\|A0A2P4LTC4_QUESU	4.0e-101	53.24	Polygalacturonase OS=Quercus suber OX=58331 GN=CFP56_55710 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0004650	polygalacturonase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0005975	carbohydrate metabolic process

Vocabulary: **INTERPRO**
Term	Definition
IPR011050	Pectin_lyase_fold/virulence
IPR000743	Glyco_hydro_28
IPR012334	Pectin_lyas_fold

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005982	starch metabolic process
biological_process	GO:0005985	sucrose metabolic process
biological_process	GO:0005975	carbohydrate metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004650	polygalacturonase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G044880.1	CsaV3_1G044880.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012334	Pectin lyase fold	GENE3D	G3DSA:2.160.20.10		coord: 20..175 e-value: 2.3E-30 score: 107.9
IPR012334	Pectin lyase fold	GENE3D	G3DSA:2.160.20.10		coord: 176..320 e-value: 1.1E-42 score: 148.4
IPR000743	Glycoside hydrolase, family 28	PFAM	PF00295	Glyco_hydro_28	coord: 60..176 e-value: 1.8E-12 score: 46.9 coord: 177..311 e-value: 4.5E-34 score: 117.9
None	No IPR available	PANTHER	PTHR31375:SF2	POLYGALACTURONASE/PECTINASE	coord: 25..176 coord: 177..324
None	No IPR available	PANTHER	PTHR31375	FAMILY NOT NAMED	coord: 25..176 coord: 177..324
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	SSF51126	Pectin lyase-like	coord: 20..324

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G044880	Silver-seed gourd	carcucB0949
CsaV3_1G044880	Cucumber (Gy14) v2	cgybcucB001
CsaV3_1G044880	Cucumber (Gy14) v1	cgycucB603
CsaV3_1G044880	Cucurbita maxima (Rimu)	cmacucB0099
CsaV3_1G044880	Cucurbita moschata (Rifu)	cmocucB0090
CsaV3_1G044880	Wild cucumber (PI 183967)	cpicucB000
CsaV3_1G044880	Bottle gourd (USVL1VR-Ls)	cuclsiB068
CsaV3_1G044880	Melon (DHL92) v3.5.1	cucmeB044
CsaV3_1G044880	Melon (DHL92) v3.6.1	cucmedB041
CsaV3_1G044880	Watermelon (Charleston Gray)	cucwcgB041
CsaV3_1G044880	Watermelon (97103) v1	cucwmB016
CsaV3_1G044880	Watermelon (97103) v2	cucwmbB033
CsaV3_1G044880	Wax gourd	cucwgoB118