CsaV3_1G044740 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G044740
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 30136187 .. 30136534 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGGGACATTGGTGTAAAGTGTGGATGGTCACTCTCTTATGTGCAAGAAGTGACGCAGTCTGAAGCTCCAAAGTCGACTATTGAGCAGGGTGGTATTCCAACTGGGTGTTGCTATATTTTTGTGGATGCCGCTTGTTCATCTGTTCGGAATGCGTCTGGTATAGGTGTTGTGGCATTGGATGCTTGTAGGAATGTTTTAGGGGCAGTTGCTAAACAATTATCAAATCCTTTTAACCCCTTGCTTTCGGAAACTGCTGCTATCAAGGAAGGGGTTATTTTAGCTCATTTGTTGCATACTCTGTGTTGTGGCCATTTCTCTCTGGTTGTCTTACTTCAGTTCAATTGA

mRNA sequence

ATGCGGGACATTGGTGTAAAGTGTGGATGGTCACTCTCTTATGTGCAAGAAGTGACGCAGTCTGAAGCTCCAAAGTCGACTATTGAGCAGGGTGGTATTCCAACTGGGTGTTGCTATATTTTTGTGGATGCCGCTTGTTCATCTGTTCGGAATGCGTCTGGTATAGGTGTTGTGGCATTGGATGCTTGTAGGAATGTTTTAGGGGCAGTTGCTAAACAATTATCAAATCCTTTTAACCCCTTGCTTTCGGAAACTGCTGCTATCAAGGAAGGGGTTATTTTAGCTCATTTGTTGCATACTCTGTGTTGTGGCCATTTCTCTCTGGTTGTCTTACTTCAGTTCAATTGA

Coding sequence (CDS)

ATGCGGGACATTGGTGTAAAGTGTGGATGGTCACTCTCTTATGTGCAAGAAGTGACGCAGTCTGAAGCTCCAAAGTCGACTATTGAGCAGGGTGGTATTCCAACTGGGTGTTGCTATATTTTTGTGGATGCCGCTTGTTCATCTGTTCGGAATGCGTCTGGTATAGGTGTTGTGGCATTGGATGCTTGTAGGAATGTTTTAGGGGCAGTTGCTAAACAATTATCAAATCCTTTTAACCCCTTGCTTTCGGAAACTGCTGCTATCAAGGAAGGGGTTATTTTAGCTCATTTGTTGCATACTCTGTGTTGTGGCCATTTCTCTCTGGTTGTCTTACTTCAGTTCAATTGA

Protein sequence

MRDIGVKCGWSLSYVQEVTQSEAPKSTIEQGGIPTGCCYIFVDAACSSVRNASGIGVVALDACRNVLGAVAKQLSNPFNPLLSETAAIKEGVILAHLLHTLCCGHFSLVVLLQFN
Homology
[Close]
BLAST of CsaV3_1G044740 vs. NCBI nr
Match: KGN66696.1 (hypothetical protein Csa_1G660160 [Cucumis sativus])

HSP 1 Score: 187.6 bits (475), Expect = 2.4e-44
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0 

Query: 1  MRDIGVKCGWSLSYVQEVTQSEAPKSTIEQGGIPTGCCYIFVDAACSSVRNASGIGVVAL 60
          MRDIGVKCGWSLSYVQEVTQSEAPKSTIEQGGIPTGCCYIFVDAACSSVRNASGIGVVAL
Sbjct: 1  MRDIGVKCGWSLSYVQEVTQSEAPKSTIEQGGIPTGCCYIFVDAACSSVRNASGIGVVAL 60

Query: 61 DACRNVLGAVAKQLSNPFNPLLSETAAIKEG 92
          DACRNVLGAVAKQLSNPFNPLLSETAAIKEG
Sbjct: 61 DACRNVLGAVAKQLSNPFNPLLSETAAIKEG 91

[Close]
BLAST of CsaV3_1G044740 vs. TrEMBL
Match: tr|A0A0A0M389|A0A0A0M389_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G660160 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.6e-44
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0 

Query: 1  MRDIGVKCGWSLSYVQEVTQSEAPKSTIEQGGIPTGCCYIFVDAACSSVRNASGIGVVAL 60
          MRDIGVKCGWSLSYVQEVTQSEAPKSTIEQGGIPTGCCYIFVDAACSSVRNASGIGVVAL
Sbjct: 1  MRDIGVKCGWSLSYVQEVTQSEAPKSTIEQGGIPTGCCYIFVDAACSSVRNASGIGVVAL 60

Query: 61 DACRNVLGAVAKQLSNPFNPLLSETAAIKEG 92
          DACRNVLGAVAKQLSNPFNPLLSETAAIKEG
Sbjct: 61 DACRNVLGAVAKQLSNPFNPLLSETAAIKEG 91

The following BLAST results are available for this feature:
BLAST of CsaV3_1G044740 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN66696.12.4e-44100.00hypothetical protein Csa_1G660160 [Cucumis sativus][more]
BLAST of CsaV3_1G044740 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G044740 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G044740 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0M389|A0A0A0M389_CUCSA1.6e-44100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G660160 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G044740.1CsaV3_1G044740.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF13456RVT_3coord: 42..95
e-value: 2.2E-5
score: 24.2

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G044740Silver-seed gourdcarcucB0949
CsaV3_1G044740Silver-seed gourdcarcucB1010
CsaV3_1G044740Cucumber (Gy14) v2cgybcucB001
CsaV3_1G044740Cucumber (Gy14) v1cgycucB542
CsaV3_1G044740Cucurbita maxima (Rimu)cmacucB0066
CsaV3_1G044740Cucurbita maxima (Rimu)cmacucB0099
CsaV3_1G044740Cucurbita moschata (Rifu)cmocucB0053
CsaV3_1G044740Cucurbita moschata (Rifu)cmocucB0090
CsaV3_1G044740Cucurbita pepo (Zucchini)cpecucB0428
CsaV3_1G044740Wild cucumber (PI 183967)cpicucB000
CsaV3_1G044740Bottle gourd (USVL1VR-Ls)cuclsiB068
CsaV3_1G044740Bottle gourd (USVL1VR-Ls)cuclsiB090
CsaV3_1G044740Melon (DHL92) v3.5.1cucmeB044
CsaV3_1G044740Melon (DHL92) v3.6.1cucmedB041
CsaV3_1G044740Watermelon (Charleston Gray)cucwcgB041
CsaV3_1G044740Watermelon (97103) v1cucwmB016
CsaV3_1G044740Watermelon (97103) v2cucwmbB033
CsaV3_1G044740Wax gourdcucwgoB098