CsaV3_1G044690 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G044690
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr1 : 30101075 .. 30101337 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAGGGGAGAAGAAGCATGTGGGCGTGAAGAACCTCCAAGGACAAGGTGTGGTGTTAAGATGTTAGGCATTGAAGCTTGCTAGGTGTTTGGCAAGGCGAGATAACCTCCAAAGAGGTTATCTAGGCCACAAGGCAAGGGGCTAGGCAAGGAAGGAAGGGTGCTAGGCGAGAAGGCTTTGTGAGGTTAGCAAGCATGCGGCCAAGGGCTATGCATTTTAAAGGCTTGCGGCCACGCAAGGAAGTAAGGCAAGACGTTTAA

mRNA sequence

ATGGCTAGGGGAGAAGAAGCATGTGGGCGTGAAGAACCTCCAAGGACAAGGCAAGGGGCTAGGCAAGGAAGGAAGGGTGCTAGGCGAGAAGGCTTTGTGAGGTTAGCAAGCATGCGGCCAAGGGCTATGCATTTTAAAGGCTTGCGGCCACGCAAGGAAGTAAGGCAAGACGTTTAA

Coding sequence (CDS)

ATGGCTAGGGGAGAAGAAGCATGTGGGCGTGAAGAACCTCCAAGGACAAGGCAAGGGGCTAGGCAAGGAAGGAAGGGTGCTAGGCGAGAAGGCTTTGTGAGGTTAGCAAGCATGCGGCCAAGGGCTATGCATTTTAAAGGCTTGCGGCCACGCAAGGAAGTAAGGCAAGACGTTTAA

Protein sequence

MARGEEACGREEPPRTRQGARQGRKGARREGFVRLASMRPRAMHFKGLRPRKEVRQDV

Homology

[Close]

BLAST of CsaV3_1G044690 vs. NCBI nr
Match: KGN66692.1 (hypothetical protein Csa_1G660120 [Cucumis sativus])

HSP 1 Score: 115.5 bits (288), Expect = 6.0e-23
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1  MARGEEACGREEPPRTRQGARQGRKGARREGFVRLASMRPRAMHFKGLRPRKEVRQDV 59
          MARGEEACGREEPPRTRQGARQGRKGARREGFVRLASMRPRAMHFKGLRPRKEVRQDV
Sbjct: 1  MARGEEACGREEPPRTRQGARQGRKGARREGFVRLASMRPRAMHFKGLRPRKEVRQDV 58

[Close]

BLAST of CsaV3_1G044690 vs. TrEMBL
Match: tr|A0A0A0M0N3|A0A0A0M0N3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G660120 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 3.9e-23
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1  MARGEEACGREEPPRTRQGARQGRKGARREGFVRLASMRPRAMHFKGLRPRKEVRQDV 59
          MARGEEACGREEPPRTRQGARQGRKGARREGFVRLASMRPRAMHFKGLRPRKEVRQDV
Sbjct: 1  MARGEEACGREEPPRTRQGARQGRKGARREGFVRLASMRPRAMHFKGLRPRKEVRQDV 58

The following BLAST results are available for this feature:

BLAST of CsaV3_1G044690 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN66692.1	6.0e-23	100.00	hypothetical protein Csa_1G660120 [Cucumis sativus]	[more]

BLAST of CsaV3_1G044690 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G044690 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G044690 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0M0N3\|A0A0A0M0N3_CUCSA	3.9e-23	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G660120 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G044690.1	CsaV3_1G044690.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G044690	Silver-seed gourd	carcucB0949
CsaV3_1G044690	Silver-seed gourd	carcucB1010
CsaV3_1G044690	Cucumber (Gy14) v2	cgybcucB001
CsaV3_1G044690	Cucumber (Gy14) v1	cgycucB542
CsaV3_1G044690	Cucurbita maxima (Rimu)	cmacucB0066
CsaV3_1G044690	Cucurbita maxima (Rimu)	cmacucB0099
CsaV3_1G044690	Cucurbita moschata (Rifu)	cmocucB0053
CsaV3_1G044690	Cucurbita moschata (Rifu)	cmocucB0090
CsaV3_1G044690	Cucurbita pepo (Zucchini)	cpecucB0428
CsaV3_1G044690	Wild cucumber (PI 183967)	cpicucB000
CsaV3_1G044690	Bottle gourd (USVL1VR-Ls)	cuclsiB068
CsaV3_1G044690	Bottle gourd (USVL1VR-Ls)	cuclsiB090
CsaV3_1G044690	Melon (DHL92) v3.5.1	cucmeB044
CsaV3_1G044690	Melon (DHL92) v3.6.1	cucmedB041
CsaV3_1G044690	Watermelon (Charleston Gray)	cucwcgB041
CsaV3_1G044690	Watermelon (97103) v1	cucwmB016
CsaV3_1G044690	Watermelon (97103) v2	cucwmbB033
CsaV3_1G044690	Wax gourd	cucwgoB098