CsaV3_1G044530 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G044530
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionU11/U12 small nuclear ribonucleoprotein 48 kDa protein
Locationchr1 : 29927355 .. 29929507 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACGAATTGGATCAGAAAGTTGTGAATAATGGCCATGTTACTGGAGAAGATCAAACGGTCAATTGTAGGGTGATTCTTGTGTCCCAAGTTGCTGCAGCGTTGCATGAGCGTCTCCTACTTGAAGAAAAAGCTCATCTGCAAACTAAATATGAGCGGTATGTTACTTCTACAATTACTAGTCCTGTTTTTCATGTAGGTACTAGTTTTGATTGATGTTTTACTTAGTGTTTACTCGTTTGTTGGCCCCTTTCCAACTCGAGTTCAAATTCCACTCCCTGGATTTGACTAAGAAATGATAATTATACACTCTTCCCCACCTCCGCGTCTAAATCAAAGCGATTCAATTTCATTATTTTTATATGCGTTTGCTTTTCATATTTCAAATCATTCTTTTTTTTTTGTCTTAATTTATTTGTTTTATACTTATTTTATTAATTCTTGTTAGGTTGTTTAAGTTATATTTTTGTTATATGTCAATAACTTTTTGATTTATTTCCATTGTAATATGTTATTGTAGATTTAATTTGAAATAAAAATTGAGAAATATTTTAAAAGAAAATTCACTCATTCTGATATCATGTGTACAACAAATTTATGCTTGTTTTCTATTTTGGGAAGAAAAATAGTTGTTAGAAGACTTCAAAGGTAAGGGTCTAAGTCCATTGTTGTCTCCTACCTACGATAGTAAAATTTTGACAAGGGTTCCTGTGAAATGCATGGAAGTTTGTCTCGACTTTCTTAGTTATTAAACTAAGCCTTTTCTATCCAATAAAAACAAAAGAAAAAAAAAAAAAAAGAAAACAAAGTAAACAAAACTATTGATTGAGGTATTGAATTTAACTTCAATCAAATTAATAAAGATTAGAGTAGTTTACCTGAATTTGTAGAGTCTCAGTTATTTACTCCATGCCTTTGATTTTATCAAAAGGATTTCTGTAAAAAGAAATGAGGATCTCACTATTCAGGTAGGCAACTTTTGGAATCAGACTAATCCATTCTTAACTATTTTAGGGTTTCGGAGTATAATTATATCTCTCAAAGAGCTTGTGAAGAGCGCAAGAGATGTTGCAACTATAGACCTATAATTGAGCATGATGGACTCCCAAAGAAGCAGTCTCATAATGAGGTAGTTCTGAGCTCTTTACTATTCTTGTTATTAATCTAGCAGCTGTTAATTTTTTCTGTTCATTTATTAATGATTTTAAATCTCATGAATTCTTCCGATTGACTGCTCTGAAATTGGGATACCATTGGAATAGAACATAAAAATTTGTAGATTCTCTAATTCCAATAGGAGCTTATGAGATGGCTGTTTTGTCATTCTTTTCCTGCATTTTGTGCACCTCCTTAGTCCTTGCATATTATTTTATATAAAAAAGAATAAACCTCCTGTAGCAATAAATGATGAAGCAGCAGCAGCTGGTAGACTGCTTAATGTTCAGTGGCCCATGATGTTTCCTGTCTGTTTGTTTATAAAAAGCAGGATGCAAACAAGACGAAAACAAGGGAGGAATTGTTGGCTGAAGAAAGGGATTATAAACGTCGAAGAATGTCATACCGTGGAAAGAAGGCAAAGCGATCAACTTTACAGGTATCAGCTTGTTAGATTTATCTCTTGTAGGATGATTCTTATTCATATGCTGCTTCCAACATAGCTTTTGTTATCTCTCTATTCTGTAATAGTTATCGGCATAGGGTCTAACTATGGCATGACAATTCCTTTTCTTATGATCTTTTATGGAAAGATGTAAAATTATATATGTTTTCTAGCTCCTGCATCAACTTTTGCCACCAGAAGTTTTTATGTTAGGTGATATCCTCACTCAAGTTTTTGCTAATTTTACTTTCCGTGGAAGGTTACAAGAGATATATTGAGGAATACGTGGAGGAGATTATGAAAGCTGGAGGAATTGGACGCTTTTGTGAAGGGACCTGAAGAGAGAGGAATAAAATCTGAACAACCAAGTGATCATAACCTTACAAGAAATATTATTGCTGACGTGCACACAAGAGGAAGCAACGGCTCATATGGAGATGCCAGACATAGCTCAGGTCACTCCAAGAAGCAGTCTAATTATGATAGTAGATACTTGGCTTCTGAGAAGCCACAAAAAAGTCATTATGGGTACTATGGCTCTCCGGAAGATTAA

mRNA sequence

ATGAACGAATTGGATCAGAAAGTTGTGAATAATGGCCATGTTACTGGAGAAGATCAAACGGTCAATTGTAGGGTGATTCTTGTGTCCCAAGTTGCTGCAGCGTTGCATGAGCGTCTCCTACTTGAAGAAAAAGCTCATCTGCAAACTAAATATGAGCGGGTTTCGGAGTATAATTATATCTCTCAAAGAGCTTGTGAAGAGCGCAAGAGATGTTGCAACTATAGACCTATAATTGAGCATGATGGACTCCCAAAGAAGCAGTCTCATAATGAGGATGCAAACAAGACGAAAACAAGGGAGGAATTGTTGGCTGAAGAAAGGGATTATAAACGTCGAAGAATGTCATACCGTGGAAAGAAGGCAAAGCGATCAACTTTACAGGGACCTGAAGAGAGAGGAATAAAATCTGAACAACCAAGTGATCATAACCTTACAAGAAATATTATTGCTGACGTGCACACAAGAGGAAGCAACGGCTCATATGGAGATGCCAGACATAGCTCAGGTCACTCCAAGAAGCAGTCTAATTATGATAGTAGATACTTGGCTTCTGAGAAGCCACAAAAAAGTCATTATGGGTACTATGGCTCTCCGGAAGATTAA

Coding sequence (CDS)

ATGAACGAATTGGATCAGAAAGTTGTGAATAATGGCCATGTTACTGGAGAAGATCAAACGGTCAATTGTAGGGTGATTCTTGTGTCCCAAGTTGCTGCAGCGTTGCATGAGCGTCTCCTACTTGAAGAAAAAGCTCATCTGCAAACTAAATATGAGCGGGTTTCGGAGTATAATTATATCTCTCAAAGAGCTTGTGAAGAGCGCAAGAGATGTTGCAACTATAGACCTATAATTGAGCATGATGGACTCCCAAAGAAGCAGTCTCATAATGAGGATGCAAACAAGACGAAAACAAGGGAGGAATTGTTGGCTGAAGAAAGGGATTATAAACGTCGAAGAATGTCATACCGTGGAAAGAAGGCAAAGCGATCAACTTTACAGGGACCTGAAGAGAGAGGAATAAAATCTGAACAACCAAGTGATCATAACCTTACAAGAAATATTATTGCTGACGTGCACACAAGAGGAAGCAACGGCTCATATGGAGATGCCAGACATAGCTCAGGTCACTCCAAGAAGCAGTCTAATTATGATAGTAGATACTTGGCTTCTGAGAAGCCACAAAAAAGTCATTATGGGTACTATGGCTCTCCGGAAGATTAA

Protein sequence

MNELDQKVVNNGHVTGEDQTVNCRVILVSQVAAALHERLLLEEKAHLQTKYERVSEYNYISQRACEERKRCCNYRPIIEHDGLPKKQSHNEDANKTKTREELLAEERDYKRRRMSYRGKKAKRSTLQGPEERGIKSEQPSDHNLTRNIIADVHTRGSNGSYGDARHSSGHSKKQSNYDSRYLASEKPQKSHYGYYGSPED
Homology
[Close]
BLAST of CsaV3_1G044530 vs. NCBI nr
Match: XP_008443753.1 (PREDICTED: U11/U12 small nuclear ribonucleoprotein 48 kDa protein [Cucumis melo])

HSP 1 Score: 319.7 bits (818), Expect = 7.1e-84
Identity = 179/233 (76.82%), Postives = 189/233 (81.12%), Query Frame = 0 

Query: 1   MNELDQKVVNNGHVTGEDQTVNCRVILVSQVA---AALHERLLLEEK------AHLQTKY 60
           MNELDQKVVNNG+VTG  +TVNCRVILVSQVA   AALHER LLEEK      AHLQTKY
Sbjct: 392 MNELDQKVVNNGNVTG-GETVNCRVILVSQVAAAVAALHERFLLEEKIKALRFAHLQTKY 451

Query: 61  ERVSEYNYISQRACEERKRCCNYRPIIEHDGLPKKQSHNEDANKTKTREELLAEERDYKR 120
           +RVSEYNYISQRACEERKR CNYRPIIEHDGLPK+QS+NEDANKTKTREELLAEERDYKR
Sbjct: 452 QRVSEYNYISQRACEERKRRCNYRPIIEHDGLPKQQSYNEDANKTKTREELLAEERDYKR 511

Query: 121 RRMSYRGKKAKRSTLQ------------------------GPEERGIKSEQPSDHNLTRN 180
           RRMSYRGKKAKRSTLQ                        GPEERGIKSEQPSDHN+TRN
Sbjct: 512 RRMSYRGKKAKRSTLQVTRDIIEEYMEEIMKAGGIGCFVKGPEERGIKSEQPSDHNITRN 571

Query: 181 IIADVHTRGSNGSYGDARHSSGHSKKQSNYDSRYLASEKPQKSHYGYYGSPED 201
           I+ADVHTRGSN   GDARHSSGHSKKQS +DSRYL S+KPQK HY +YGSPED
Sbjct: 572 IVADVHTRGSNDPCGDARHSSGHSKKQSFHDSRYLVSDKPQKGHYEHYGSPED 623

[Close]
BLAST of CsaV3_1G044530 vs. NCBI nr
Match: XP_022927551.1 (U11/U12 small nuclear ribonucleoprotein 48 kDa protein [Cucurbita moschata])

HSP 1 Score: 278.1 bits (710), Expect = 2.4e-71
Identity = 158/234 (67.52%), Postives = 180/234 (76.92%), Query Frame = 0 

Query: 1   MNELDQKVVNNGHVTGEDQTVNCRVILVSQVA---AALHERLLLEEK------AHLQTKY 60
           + ELD+KV+NN +V+GE +TVNCRVI VSQVA   AALHER LLEEK      +HLQTK+
Sbjct: 416 LKELDKKVINNVYVSGE-ETVNCRVIFVSQVAAAVAALHERFLLEEKIKALRFSHLQTKH 475

Query: 61  ERVSEYNYISQRACEERKRCCNYRPIIEHDGLPKKQSHNEDANKTKTREELLAEERDYKR 120
           + VSE+NYISQRACEERKR CNYRPIIEHDGLPK+QSH+ED +KTKT+EELLAEERDYKR
Sbjct: 476 QLVSEHNYISQRACEERKRRCNYRPIIEHDGLPKQQSHDEDRDKTKTKEELLAEERDYKR 535

Query: 121 RRMSYRGKKAKRSTLQ------------------------GPEERGIKSEQPSDHNLTRN 180
           RRMSYRGKKAKRSTLQ                        G EERGIKSEQP+DH +TR+
Sbjct: 536 RRMSYRGKKAKRSTLQVTRDIIEEYMDEIMKAGGIGYFVKGTEERGIKSEQPTDHYITRD 595

Query: 181 IIADVHTRGSNGSYGDARHS-SGHSKKQSNYDSRYLASEKPQKSHYGYYGSPED 201
            IAD HT+GSN SYG+ RH  S HS+KQSNYD+RY ASEKP K  YG+YGSPED
Sbjct: 596 SIADGHTKGSNSSYGETRHHISSHSRKQSNYDNRYSASEKPPKGRYGHYGSPED 648

[Close]
BLAST of CsaV3_1G044530 vs. NCBI nr
Match: XP_023004252.1 (U11/U12 small nuclear ribonucleoprotein 48 kDa protein isoform X2 [Cucurbita maxima])

HSP 1 Score: 274.2 bits (700), Expect = 3.4e-70
Identity = 157/234 (67.09%), Postives = 179/234 (76.50%), Query Frame = 0 

Query: 1   MNELDQKVVNNGHVTGEDQTVNCRVILVSQVA---AALHERLLLEEK------AHLQTKY 60
           + +LD KV+NN +VTGE +TVNCRVI VSQVA   AALHER LLEEK      +HLQTK+
Sbjct: 390 LKKLDMKVINNVYVTGE-ETVNCRVIFVSQVAAAVAALHERFLLEEKIKALRFSHLQTKH 449

Query: 61  ERVSEYNYISQRACEERKRCCNYRPIIEHDGLPKKQSHNEDANKTKTREELLAEERDYKR 120
           + VSE+NYISQRACEERKR C+YRPIIEHDGLPK+QSH+ED +KTKT+EELLAEERDYKR
Sbjct: 450 QLVSEHNYISQRACEERKRRCSYRPIIEHDGLPKQQSHDEDRDKTKTKEELLAEERDYKR 509

Query: 121 RRMSYRGKKAKRSTLQ------------------------GPEERGIKSEQPSDHNLTRN 180
           RRMSYRGKKAKRSTLQ                        G EERGIKSEQP+DH +TR+
Sbjct: 510 RRMSYRGKKAKRSTLQVTRDIIEEYMDEIMKAGGIGYFVKGTEERGIKSEQPTDHYITRD 569

Query: 181 IIADVHTRGSNGSYGDAR-HSSGHSKKQSNYDSRYLASEKPQKSHYGYYGSPED 201
            IAD HT+GSN SYG+ R HSS HS+KQSNYD+RY ASEKP K   G+YGSPED
Sbjct: 570 SIADGHTKGSNSSYGETRHHSSSHSRKQSNYDNRYSASEKPPKGRCGHYGSPED 622

[Close]
BLAST of CsaV3_1G044530 vs. NCBI nr
Match: XP_023530557.1 (U11/U12 small nuclear ribonucleoprotein 48 kDa protein [Cucurbita pepo subsp. pepo] >XP_023530558.1 U11/U12 small nuclear ribonucleoprotein 48 kDa protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 273.9 bits (699), Expect = 4.5e-70
Identity = 158/235 (67.23%), Postives = 180/235 (76.60%), Query Frame = 0 

Query: 1   MNELDQKVVNNGHVTGEDQTVNCRVILVSQVA---AALHERLLLEEK------AHLQTKY 60
           + ELD+KV+NN +VTGE +TVNCRVI VSQVA   AALHER LLEEK      +HLQTK+
Sbjct: 392 LKELDKKVINNVYVTGE-ETVNCRVIFVSQVAAAVAALHERFLLEEKIKALRFSHLQTKH 451

Query: 61  ERVSEYNYISQRACEERKRCCNYRPIIEHDGLPKKQSHNE-DANKTKTREELLAEERDYK 120
           + VSE+NYI QRACEERKR CNYRPIIEHDGLPK+QSH+E D +KTKT+EELLAEERDYK
Sbjct: 452 QLVSEHNYICQRACEERKRRCNYRPIIEHDGLPKQQSHDEQDRDKTKTKEELLAEERDYK 511

Query: 121 RRRMSYRGKKAKRSTLQ------------------------GPEERGIKSEQPSDHNLTR 180
           RRRMSYRGKKAKRSTLQ                        G EERGIKSEQP+DH +TR
Sbjct: 512 RRRMSYRGKKAKRSTLQVTRDIIEEYMDEIMKAGGIGYFVKGTEERGIKSEQPTDHYITR 571

Query: 181 NIIADVHTRGSNGSYGDAR-HSSGHSKKQSNYDSRYLASEKPQKSHYGYYGSPED 201
           + IAD HT+GSN SYG+ R H+S HS+KQSNYD+RY ASEKP K  YG+YGSPED
Sbjct: 572 DSIADGHTKGSNSSYGETRHHTSSHSRKQSNYDNRYSASEKPPKGRYGHYGSPED 625

[Close]
BLAST of CsaV3_1G044530 vs. NCBI nr
Match: XP_023004235.1 (U11/U12 small nuclear ribonucleoprotein 48 kDa protein isoform X1 [Cucurbita maxima] >XP_023004243.1 U11/U12 small nuclear ribonucleoprotein 48 kDa protein isoform X1 [Cucurbita maxima])

HSP 1 Score: 269.6 bits (688), Expect = 8.4e-69
Identity = 157/235 (66.81%), Postives = 179/235 (76.17%), Query Frame = 0 

Query: 1   MNELDQKVVNNGHVTGEDQTVNCRVILVSQVA---AALHERLLLEEK------AHLQTKY 60
           + +LD KV+NN +VTGE +TVNCRVI VSQVA   AALHER LLEEK      +HLQTK+
Sbjct: 390 LKKLDMKVINNVYVTGE-ETVNCRVIFVSQVAAAVAALHERFLLEEKIKALRFSHLQTKH 449

Query: 61  ERVSEYNYISQRACEERKRCCNYRPIIEHDGLPKKQSHNE-DANKTKTREELLAEERDYK 120
           + VSE+NYISQRACEERKR C+YRPIIEHDGLPK+QSH+E D +KTKT+EELLAEERDYK
Sbjct: 450 QLVSEHNYISQRACEERKRRCSYRPIIEHDGLPKQQSHDEQDRDKTKTKEELLAEERDYK 509

Query: 121 RRRMSYRGKKAKRSTLQ------------------------GPEERGIKSEQPSDHNLTR 180
           RRRMSYRGKKAKRSTLQ                        G EERGIKSEQP+DH +TR
Sbjct: 510 RRRMSYRGKKAKRSTLQVTRDIIEEYMDEIMKAGGIGYFVKGTEERGIKSEQPTDHYITR 569

Query: 181 NIIADVHTRGSNGSYGDAR-HSSGHSKKQSNYDSRYLASEKPQKSHYGYYGSPED 201
           + IAD HT+GSN SYG+ R HSS HS+KQSNYD+RY ASEKP K   G+YGSPED
Sbjct: 570 DSIADGHTKGSNSSYGETRHHSSSHSRKQSNYDNRYSASEKPPKGRCGHYGSPED 623

[Close]
BLAST of CsaV3_1G044530 vs. TAIR10
Match: AT3G04160.2 (unknown protein)

HSP 1 Score: 95.5 bits (236), Expect = 3.9e-20
Identity = 70/175 (40.00%), Postives = 98/175 (56.00%), Query Frame = 0 

Query: 28  VSQVAAALHERLLLEEK------AHLQTKYERVSEYNYIS--QRACEERKRCCNYRPIIE 87
           VS   AAL+ER LLEEK      A   T+Y+R+    ++S       ER R C+YRPII+
Sbjct: 428 VSAAVAALYERSLLEEKIRAVRYAQPLTRYQRIISCLHLSLIPHDVSERNRRCSYRPIID 487

Query: 88  HDGLPKKQSHNEDANKTKTREELLAEERDYKRRRMSYRGKKAKRSTLQGPEERGIKSEQP 147
           HDG P+++S N+D +K KTREELLAEERDYKRRRMSYRGKK KR+  Q            
Sbjct: 488 HDGRPRQRSLNQDMDKMKTREELLAEERDYKRRRMSYRGKKVKRTPRQ------------ 547

Query: 148 SDHNLTRNIIADVHTRGSNGSYG-----DARHSSGHSKKQSNYDSRYLASEKPQK 190
             H++      ++   G  G +       +R   G+ +K+S++     +++K  K
Sbjct: 548 VLHDMIEEYTEEIKLAGGIGCFEKGMPLQSRSPIGNDQKESDFGYSIPSTDKQWK 590

[Close]
BLAST of CsaV3_1G044530 vs. Swiss-Prot
Match: sp|Q9M8X2|U1148_ARATH (U11/U12 small nuclear ribonucleoprotein 48 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SNRNP48 PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.4e-22
Identity = 72/173 (41.62%), Postives = 102/173 (58.96%), Query Frame = 0 

Query: 28  VSQVAAALHERLLLEEK------AHLQTKYERVSEYNYISQRACEERKRCCNYRPIIEHD 87
           VS   AAL+ER LLEEK      A   T+Y+R +E  +++ +A EER R C+YRPII+HD
Sbjct: 428 VSAAVAALYERSLLEEKIRAVRYAQPLTRYQRAAELGFMTAKADEERNRRCSYRPIIDHD 487

Query: 88  GLPKKQSHNEDANKTKTREELLAEERDYKRRRMSYRGKKAKRSTLQGPEERGIKSEQPSD 147
           G P+++S N+D +K KTREELLAEERDYKRRRMSYRGKK KR+  Q              
Sbjct: 488 GRPRQRSLNQDMDKMKTREELLAEERDYKRRRMSYRGKKVKRTPRQ------------VL 547

Query: 148 HNLTRNIIADVHTRGSNGSYG-----DARHSSGHSKKQSNYDSRYLASEKPQK 190
           H++      ++   G  G +       +R   G+ +K+S++     +++K  K
Sbjct: 548 HDMIEEYTEEIKLAGGIGCFEKGMPLQSRSPIGNDQKESDFGYSIPSTDKQWK 588

[Close]
BLAST of CsaV3_1G044530 vs. TrEMBL
Match: tr|A0A1S3B9I2|A0A1S3B9I2_CUCME (U11/U12 small nuclear ribonucleoprotein 48 kDa protein OS=Cucumis melo OX=3656 GN=LOC103487266 PE=4 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 4.7e-84
Identity = 179/233 (76.82%), Postives = 189/233 (81.12%), Query Frame = 0 

Query: 1   MNELDQKVVNNGHVTGEDQTVNCRVILVSQVA---AALHERLLLEEK------AHLQTKY 60
           MNELDQKVVNNG+VTG  +TVNCRVILVSQVA   AALHER LLEEK      AHLQTKY
Sbjct: 392 MNELDQKVVNNGNVTG-GETVNCRVILVSQVAAAVAALHERFLLEEKIKALRFAHLQTKY 451

Query: 61  ERVSEYNYISQRACEERKRCCNYRPIIEHDGLPKKQSHNEDANKTKTREELLAEERDYKR 120
           +RVSEYNYISQRACEERKR CNYRPIIEHDGLPK+QS+NEDANKTKTREELLAEERDYKR
Sbjct: 452 QRVSEYNYISQRACEERKRRCNYRPIIEHDGLPKQQSYNEDANKTKTREELLAEERDYKR 511

Query: 121 RRMSYRGKKAKRSTLQ------------------------GPEERGIKSEQPSDHNLTRN 180
           RRMSYRGKKAKRSTLQ                        GPEERGIKSEQPSDHN+TRN
Sbjct: 512 RRMSYRGKKAKRSTLQVTRDIIEEYMEEIMKAGGIGCFVKGPEERGIKSEQPSDHNITRN 571

Query: 181 IIADVHTRGSNGSYGDARHSSGHSKKQSNYDSRYLASEKPQKSHYGYYGSPED 201
           I+ADVHTRGSN   GDARHSSGHSKKQS +DSRYL S+KPQK HY +YGSPED
Sbjct: 572 IVADVHTRGSNDPCGDARHSSGHSKKQSFHDSRYLVSDKPQKGHYEHYGSPED 623

[Close]
BLAST of CsaV3_1G044530 vs. TrEMBL
Match: tr|A0A0A0LY27|A0A0A0LY27_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G657490 PE=4 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 4.0e-67
Identity = 143/187 (76.47%), Postives = 144/187 (77.01%), Query Frame = 0 

Query: 53  RVSEYNYISQRACEERKRCCNYRPIIEHDGLPKKQSHNEDANKTKTREELLAEERDYKRR 112
           RVSEYNYISQRACEERKRCCNYRPIIEHDGLPKKQSHNEDANKTKTREELLAEERDYKRR
Sbjct: 7   RVSEYNYISQRACEERKRCCNYRPIIEHDGLPKKQSHNEDANKTKTREELLAEERDYKRR 66

Query: 113 RMSYRGKKAKRSTLQ---------------------------------------GPEERG 172
           RMSYRGKKAKRSTLQ                                       GPEERG
Sbjct: 67  RMSYRGKKAKRSTLQVISSLKFLLILLSVEGYKRYIEEYVEEIMKAGGIGRFVKGPEERG 126

Query: 173 IKSEQPSDHNLTRNIIADVHTRGSNGSYGDARHSSGHSKKQSNYDSRYLASEKPQKSHYG 201
           IKSEQPSDHNLTRNIIADVHTRGSNGSYGDARHSSGHSKKQSNYDSRYLASEKPQKSHYG
Sbjct: 127 IKSEQPSDHNLTRNIIADVHTRGSNGSYGDARHSSGHSKKQSNYDSRYLASEKPQKSHYG 186

[Close]
BLAST of CsaV3_1G044530 vs. TrEMBL
Match: tr|A0A0A0M085|A0A0A0M085_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G662780 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 5.2e-51
Identity = 116/136 (85.29%), Postives = 118/136 (86.76%), Query Frame = 0 

Query: 1   MNELDQKVVNNGHVTGEDQTVNCRVILVSQVA---AALHERLLLEEK------AHLQTKY 60
           MNELDQKVVNNGH       VNC VILVSQVA   AALHER LLEEK      AHLQTKY
Sbjct: 393 MNELDQKVVNNGH------AVNCSVILVSQVAAAVAALHERFLLEEKIKALRFAHLQTKY 452

Query: 61  ERVSEYNYISQRACEERKRCCNYRPIIEHDGLPKKQSHNEDANKTKTREELLAEERDYKR 120
           +RVSEYNYISQRACEERKRCCNYRPIIEHDGLPK+QSHNEDANKTKTREELLAEERDYKR
Sbjct: 453 QRVSEYNYISQRACEERKRCCNYRPIIEHDGLPKQQSHNEDANKTKTREELLAEERDYKR 512

Query: 121 RRMSYRGKKAKRSTLQ 128
           RRMSYRGKKAKRSTLQ
Sbjct: 513 RRMSYRGKKAKRSTLQ 522

[Close]
BLAST of CsaV3_1G044530 vs. TrEMBL
Match: tr|A0A2P6R5B5|A0A2P6R5B5_ROSCH (Putative U11/U12 small nuclear ribonucleoprotein 48 kDa protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0448821 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 8.1e-28
Identity = 75/113 (66.37%), Postives = 89/113 (78.76%), Query Frame = 0 

Query: 24  RVILVSQVA---AALHERLLLEEK------AHLQTKYERVSEYNYISQRACEERKRCCNY 83
           +V+ VSQVA   AALHER LLEEK      +   T+++RV E+ Y+SQRA EERK    Y
Sbjct: 132 KVVFVSQVAAAIAALHERFLLEEKIKGERVSQTLTRHQRVLEHEYVSQRADEERKNRSQY 191

Query: 84  RPIIEHDGLPKKQSHNEDANKTKTREELLAEERDYKRRRMSYRGKKAKRSTLQ 128
           RPII+HDGLP++QS N++ NKTKTREELLAEERDYKRRRMSYRGKK KR+TLQ
Sbjct: 192 RPIIDHDGLPRQQSSNQETNKTKTREELLAEERDYKRRRMSYRGKKVKRTTLQ 244

[Close]
BLAST of CsaV3_1G044530 vs. TrEMBL
Match: tr|A0A061F1I4|A0A061F1I4_THECC (U11/U12 small nuclear ribonucleoprotein 48 kDa protein, putative isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_026062 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 6.9e-27
Identity = 95/225 (42.22%), Postives = 131/225 (58.22%), Query Frame = 0 

Query: 10  NNGHVTGEDQTVNCRVILVSQVA---AALHERLLLEEK-AHLQ-----TKYERVSEYNYI 69
           +N  V   ++T+   VI VSQVA   AALHER  LEEK  HL+     ++Y+R++E+ Y+
Sbjct: 385 SNEPVETVNETIGVGVIFVSQVAAAVAALHERCFLEEKIKHLRGLQQLSRYQRMAEHAYV 444

Query: 70  SQRACEERKRCCNYRPIIEHDGLPKKQSHNEDANKTKTREELLAEERDYKRRRMSYRGKK 129
           S+RA  ERK+  NYRPII+HDGLP++ S N + + TKTREE+LAEERDYKRRRMSYRGKK
Sbjct: 445 SERADAERKKRPNYRPIIDHDGLPRQASSNGETSTTKTREEILAEERDYKRRRMSYRGKK 504

Query: 130 AKRSTLQ------------------------GPEERG-IKSEQPSDHNLTRNIIADVHTR 189
            KR+ LQ                        G EE G + SE P  ++  R + AD H +
Sbjct: 505 LKRTALQVMRDIIEEYTEEIKKAGRIGCFVKGVEEEGLLPSESPVPYD--RAVDADQHKK 564

Query: 190 GSNGSYGDARHSSGHSKKQSNYDSRYLASEKPQKSHYGYYGSPED 201
           G++     AR S  H +++S+ D    ++     S  G++   ED
Sbjct: 565 GTSDISEAARRSPNHCRRRSHDDQHTRSTRLEDSSRNGHHDLLED 607

The following BLAST results are available for this feature:
BLAST of CsaV3_1G044530 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008443753.17.1e-8476.82PREDICTED: U11/U12 small nuclear ribonucleoprotein 48 kDa protein [Cucumis melo][more]
XP_022927551.12.4e-7167.52U11/U12 small nuclear ribonucleoprotein 48 kDa protein [Cucurbita moschata][more]
XP_023004252.13.4e-7067.09U11/U12 small nuclear ribonucleoprotein 48 kDa protein isoform X2 [Cucurbita max... [more]
XP_023530557.14.5e-7067.23U11/U12 small nuclear ribonucleoprotein 48 kDa protein [Cucurbita pepo subsp. pe... [more]
XP_023004235.18.4e-6966.81U11/U12 small nuclear ribonucleoprotein 48 kDa protein isoform X1 [Cucurbita max... [more]
BLAST of CsaV3_1G044530 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G04160.23.9e-2040.00unknown protein[more]
BLAST of CsaV3_1G044530 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9M8X2|U1148_ARATH2.4e-2241.62U11/U12 small nuclear ribonucleoprotein 48 kDa protein OS=Arabidopsis thaliana O... [more]
BLAST of CsaV3_1G044530 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3B9I2|A0A1S3B9I2_CUCME4.7e-8476.82U11/U12 small nuclear ribonucleoprotein 48 kDa protein OS=Cucumis melo OX=3656 G... [more]
tr|A0A0A0LY27|A0A0A0LY27_CUCSA4.0e-6776.47Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G657490 PE=4 SV=1[more]
tr|A0A0A0M085|A0A0A0M085_CUCSA5.2e-5185.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G662780 PE=4 SV=1[more]
tr|A0A2P6R5B5|A0A2P6R5B5_ROSCH8.1e-2866.37Putative U11/U12 small nuclear ribonucleoprotein 48 kDa protein OS=Rosa chinensi... [more]
tr|A0A061F1I4|A0A061F1I4_THECC6.9e-2742.22U11/U12 small nuclear ribonucleoprotein 48 kDa protein, putative isoform 1 OS=Th... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR032845Snrnp48
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G044530.1CsaV3_1G044530.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 123..139
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 81..200
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 140..165
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 81..112
NoneNo IPR availablePANTHERPTHR21402UNCHARACTERIZEDcoord: 21..127
IPR032845U11/U12 small nuclear ribonucleoprotein 48kDa proteinPANTHERPTHR21402:SF10U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 48 KDA PROTEINcoord: 21..127

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G044530CSPI01G32350Wild cucumber (PI 183967)cpicucB000
CsaV3_1G044530CsGy1G031250Cucumber (Gy14) v2cgybcucB001
CsaV3_1G044530Lsi06G007510Bottle gourd (USVL1VR-Ls)cuclsiB090
CsaV3_1G044530Bhi02G001081Wax gourdcucwgoB115
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G044530Silver-seed gourdcarcucB0573
CsaV3_1G044530Silver-seed gourdcarcucB1010
CsaV3_1G044530Cucumber (Gy14) v1cgycucB542
CsaV3_1G044530Cucurbita maxima (Rimu)cmacucB0066
CsaV3_1G044530Cucurbita maxima (Rimu)cmacucB0099
CsaV3_1G044530Cucurbita moschata (Rifu)cmocucB0053
CsaV3_1G044530Cucurbita moschata (Rifu)cmocucB0090
CsaV3_1G044530Cucurbita pepo (Zucchini)cpecucB0000
CsaV3_1G044530Cucurbita pepo (Zucchini)cpecucB0428
CsaV3_1G044530Bottle gourd (USVL1VR-Ls)cuclsiB068
CsaV3_1G044530Melon (DHL92) v3.5.1cucmeB044
CsaV3_1G044530Melon (DHL92) v3.6.1cucmedB041
CsaV3_1G044530Watermelon (Charleston Gray)cucwcgB041
CsaV3_1G044530Watermelon (97103) v1cucwmB016
CsaV3_1G044530Watermelon (97103) v2cucwmbB033
CsaV3_1G044530Wax gourdcucwgoB098