CsaV3_1G044250 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G044250
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 29473917 .. 29474177 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGCAAGAAGAAGCCATTTACCATGACTTCACAGACCTAGAGTCAAGGATGGGCAGGATAAGGCTTGATGATGGTGTCCCACCGAAGTACAAACACATGAAGCATTATGCAAGCAAAATAGATTTAAGAGTAGGAGGACCAAGTGAGAAAGAAGAAATTAAGGTCCCTACAAAATACTCTGATAAGGTAAAAAAGTTCATTAAGGAGCTAGAAGTGGAAGAAAAGAAGAAGAAAGAGGAGGAAAGAAAAAGAATATAA

mRNA sequence

ATGAGGCAAGAAGAAGCCATTTACCATGACTTCACAGACCTAGAGTCAAGGATGGGCAGGATAAGGCTTGATGATGGTGTCCCACCGAAGTACAAACACATGAAGCATTATGCAAGCAAAATAGATTTAAGAGTAGGAGGACCAAGTGAGAAAGAAGAAATTAAGGTCCCTACAAAATACTCTGATAAGGTAAAAAAGTTCATTAAGGAGCTAGAAGTGGAAGAAAAGAAGAAGAAAGAGGAGGAAAGAAAAAGAATATAA

Coding sequence (CDS)

ATGAGGCAAGAAGAAGCCATTTACCATGACTTCACAGACCTAGAGTCAAGGATGGGCAGGATAAGGCTTGATGATGGTGTCCCACCGAAGTACAAACACATGAAGCATTATGCAAGCAAAATAGATTTAAGAGTAGGAGGACCAAGTGAGAAAGAAGAAATTAAGGTCCCTACAAAATACTCTGATAAGGTAAAAAAGTTCATTAAGGAGCTAGAAGTGGAAGAAAAGAAGAAGAAAGAGGAGGAAAGAAAAAGAATATAA

Protein sequence

MRQEEAIYHDFTDLESRMGRIRLDDGVPPKYKHMKHYASKIDLRVGGPSEKEEIKVPTKYSDKVKKFIKELEVEEKKKKEEERKRI
Homology
[Close]
BLAST of CsaV3_1G044250 vs. NCBI nr
Match: KGN66638.1 (hypothetical protein Csa_1G652210 [Cucumis sativus])

HSP 1 Score: 152.5 bits (384), Expect = 6.5e-34
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 

Query: 1  MRQEEAIYHDFTDLESRMGRIRLDDGVPPKYKHMKHYASKIDLRVGGPSEKEEIKVPTKY 60
          MRQEEAIYHDFTDLESRMGRIRLDDGVPPKYKHMKHYASKIDLRVGGPSEKEEIKVPTKY
Sbjct: 1  MRQEEAIYHDFTDLESRMGRIRLDDGVPPKYKHMKHYASKIDLRVGGPSEKEEIKVPTKY 60

Query: 61 SDKVKKFIKELEVE 75
          SDKVKKFIKELEVE
Sbjct: 61 SDKVKKFIKELEVE 74

[Close]
BLAST of CsaV3_1G044250 vs. TrEMBL
Match: tr|A0A0A0LXZ8|A0A0A0LXZ8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G652210 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 4.3e-34
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 

Query: 1  MRQEEAIYHDFTDLESRMGRIRLDDGVPPKYKHMKHYASKIDLRVGGPSEKEEIKVPTKY 60
          MRQEEAIYHDFTDLESRMGRIRLDDGVPPKYKHMKHYASKIDLRVGGPSEKEEIKVPTKY
Sbjct: 1  MRQEEAIYHDFTDLESRMGRIRLDDGVPPKYKHMKHYASKIDLRVGGPSEKEEIKVPTKY 60

Query: 61 SDKVKKFIKELEVE 75
          SDKVKKFIKELEVE
Sbjct: 61 SDKVKKFIKELEVE 74

The following BLAST results are available for this feature:
BLAST of CsaV3_1G044250 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN66638.16.5e-34100.00hypothetical protein Csa_1G652210 [Cucumis sativus][more]
BLAST of CsaV3_1G044250 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G044250 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G044250 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LXZ8|A0A0A0LXZ8_CUCSA4.3e-34100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G652210 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G044250.1CsaV3_1G044250.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 64..86

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G044250CSPI01G31960Wild cucumber (PI 183967)cpicucB000
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G044250Silver-seed gourdcarcucB0573
CsaV3_1G044250Silver-seed gourdcarcucB1010
CsaV3_1G044250Cucumber (Gy14) v2cgybcucB001
CsaV3_1G044250Cucumber (Gy14) v1cgycucB542
CsaV3_1G044250Cucurbita maxima (Rimu)cmacucB0066
CsaV3_1G044250Cucurbita maxima (Rimu)cmacucB0099
CsaV3_1G044250Cucurbita moschata (Rifu)cmocucB0053
CsaV3_1G044250Cucurbita moschata (Rifu)cmocucB0090
CsaV3_1G044250Cucurbita pepo (Zucchini)cpecucB0000
CsaV3_1G044250Cucurbita pepo (Zucchini)cpecucB0428
CsaV3_1G044250Bottle gourd (USVL1VR-Ls)cuclsiB068
CsaV3_1G044250Melon (DHL92) v3.5.1cucmeB044
CsaV3_1G044250Melon (DHL92) v3.6.1cucmedB041
CsaV3_1G044250Watermelon (Charleston Gray)cucwcgB041
CsaV3_1G044250Watermelon (97103) v1cucwmB016
CsaV3_1G044250Watermelon (97103) v2cucwmbB033
CsaV3_1G044250Wax gourdcucwgoB115