CsaV3_1G044230 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G044230
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Pol polyprotein
Location	chr1 : 29472527 .. 29472741 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTAATGGAATGTGTCACTATGCGTTAGTCTTTGGGAAGGTTTGCTACTTACCACTGAAGTTGAAACACAAGGCGTTATGGACGTGCAAAAAGTTAAACTTCAACCATCATGCCGCAGGAGAGGCAAGGTTACTCCAATTGATTGAGCTTAAAGAGTGGGGTTCTCAATCCTATGAGAACGTCAAGATCTATAAAGAGAAGACAAAGGCATG

mRNA sequence

ATGTCTAATGGAATGTGTCACTATGCGTTAGTCTTTGGGAAGGTTTGCTACTTACCACTGAAGTTGAAACACAAGGCGTTATGGACGTGCAAAAAGTTAAACTTCAACCATCATGCCGCAGGAGAGGCAAGGTTACTCCAATTGATTGAGCTTAAAGAGTGGGGTTCTCAATCCTATGAGAACGTCAAGATCTATAAAGAGAAGACAAAGGCATG

Coding sequence (CDS)

ATGTCTAATGGAATGTGTCACTATGCGTTAGTCTTTGGGAAGGTTTGCTACTTACCACTGAAGTTGAAACACAAGGCGTTATGGACGTGCAAAAAGTTAAACTTCAACCATCATGCCGCAGGAGAGGCAAGGTTACTCCAATTGATTGAGCTTAAAGAGTGGGGTTCTCAATCCTATGAGAACGTCAAGATCTATAAAGAGAAGACAAAGGCATG

Protein sequence

MSNGMCHYALVFGKVCYLPLKLKHKALWTCKKLNFNHHAAGEARLLQLIELKEWGSQSYENVKIYKEKTKAX

Homology

[Close]

BLAST of CsaV3_1G044230 vs. NCBI nr
Match: XP_008464670.1 (PREDICTED: uncharacterized protein LOC103502497 [Cucumis melo])

HSP 1 Score: 96.7 bits (239), Expect = 3.5e-17
Identity = 45/67 (67.16%), Postives = 55/67 (82.09%), Query Frame = 0


Query: 5   MCHYALVFGKVCYLPLKLKHKALWTCKKLNFNHHAAGEARLLQLIELKEWGSQSYENVKI 64
           M  Y LVF K  +LPL+ +HK LW+CKKLNF+H+ AGEARLL+L EL+EW SQ+Y+N KI
Sbjct: 123 MSPYTLVFKKAWHLPLEFEHKELWSCKKLNFDHNTAGEARLLKLNELQEWCSQAYKNAKI 182

Query: 65  YKEKTKA 72
           YKEKTKA
Sbjct: 183 YKEKTKA 189

[Close]

BLAST of CsaV3_1G044230 vs. NCBI nr
Match: XP_015940424.1 (uncharacterized protein K02A2.6-like [Arachis duranensis])

HSP 1 Score: 92.0 bits (227), Expect = 8.6e-16
Identity = 42/67 (62.69%), Postives = 53/67 (79.10%), Query Frame = 0


Query: 4   GMCHYALVFGKVCYLPLKLKHKALWTCKKLNFNHHAAGEARLLQLIELKEWGSQSYENVK 63
           GM  Y LVFGK C+LP++L+H+  W  K LNF++HAAGE RLLQL EL+E+ +Q+YEN K
Sbjct: 247 GMSPYRLVFGKACHLPVELEHRVFWALKMLNFDNHAAGERRLLQLNELEEFRNQAYENAK 306

Query: 64  IYKEKTK 71
           IYKE TK
Sbjct: 307 IYKENTK 313

[Close]

BLAST of CsaV3_1G044230 vs. NCBI nr
Match: PIN11732.1 (DNA-directed DNA polymerase [Handroanthus impetiginosus])

HSP 1 Score: 90.1 bits (222), Expect = 3.3e-15
Identity = 44/67 (65.67%), Postives = 51/67 (76.12%), Query Frame = 0


Query: 4    GMCHYALVFGKVCYLPLKLKHKALWTCKKLNFNHHAAGEARLLQLIELKEWGSQSYENVK 63
            GM  Y LVFGK C+LP++L+H A W  +KLNF+  AAGE RLLQL EL E+  QSYEN K
Sbjct: 1124 GMSPYHLVFGKACHLPVELEHNAYWAIRKLNFDMQAAGEKRLLQLNELDEFRLQSYENAK 1183

Query: 64   IYKEKTK 71
            IYKEKTK
Sbjct: 1184 IYKEKTK 1190

[Close]

BLAST of CsaV3_1G044230 vs. NCBI nr
Match: XP_015969090.1 (uncharacterized protein LOC107492562 [Arachis duranensis])

HSP 1 Score: 89.7 bits (221), Expect = 4.3e-15
Identity = 43/67 (64.18%), Postives = 51/67 (76.12%), Query Frame = 0


Query: 4   GMCHYALVFGKVCYLPLKLKHKALWTCKKLNFNHHAAGEARLLQLIELKEWGSQSYENVK 63
           GM  Y LV+GK C+LP  L+HKA W  K LNF+ +AAGE R+LQL EL+E  SQ+YEN K
Sbjct: 129 GMIPYQLVYGKACHLPFDLEHKAFWVLKLLNFDSNAAGEKRILQLQELEELRSQAYENAK 188

Query: 64  IYKEKTK 71
           IYKEKTK
Sbjct: 189 IYKEKTK 195

[Close]

BLAST of CsaV3_1G044230 vs. NCBI nr
Match: PIN00392.1 (hypothetical protein CDL12_27104 [Handroanthus impetiginosus])

HSP 1 Score: 89.4 bits (220), Expect = 5.6e-15
Identity = 44/70 (62.86%), Postives = 51/70 (72.86%), Query Frame = 0


Query: 1   MSNGMCHYALVFGKVCYLPLKLKHKALWTCKKLNFNHHAAGEARLLQLIELKEWGSQSYE 60
           M  GM  Y+L+FGK C+L +KLKH A W  KKLNF+  AAGE RLLQL  LKE+  Q+YE
Sbjct: 37  MPIGMFSYSLIFGKACHLHIKLKHNAYWAIKKLNFDKQAAGEKRLLQLNVLKEFRLQAYE 96

Query: 61  NVKIYKEKTK 71
           N KIYKEK K
Sbjct: 97  NAKIYKEKRK 106

[Close]

BLAST of CsaV3_1G044230 vs. TrEMBL
Match: tr|A0A1S3CM09|A0A1S3CM09_CUCME (uncharacterized protein LOC103502497 OS=Cucumis melo OX=3656 GN=LOC103502497 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.3e-17
Identity = 45/67 (67.16%), Postives = 55/67 (82.09%), Query Frame = 0


Query: 5   MCHYALVFGKVCYLPLKLKHKALWTCKKLNFNHHAAGEARLLQLIELKEWGSQSYENVKI 64
           M  Y LVF K  +LPL+ +HK LW+CKKLNF+H+ AGEARLL+L EL+EW SQ+Y+N KI
Sbjct: 123 MSPYTLVFKKAWHLPLEFEHKELWSCKKLNFDHNTAGEARLLKLNELQEWCSQAYKNAKI 182

Query: 65  YKEKTKA 72
           YKEKTKA
Sbjct: 183 YKEKTKA 189

[Close]

BLAST of CsaV3_1G044230 vs. TrEMBL
Match: tr|A0A2G9H2I8|A0A2G9H2I8_9LAMI (DNA-directed DNA polymerase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_15662 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.2e-15
Identity = 44/67 (65.67%), Postives = 51/67 (76.12%), Query Frame = 0


Query: 4    GMCHYALVFGKVCYLPLKLKHKALWTCKKLNFNHHAAGEARLLQLIELKEWGSQSYENVK 63
            GM  Y LVFGK C+LP++L+H A W  +KLNF+  AAGE RLLQL EL E+  QSYEN K
Sbjct: 1124 GMSPYHLVFGKACHLPVELEHNAYWAIRKLNFDMQAAGEKRLLQLNELDEFRLQSYENAK 1183

Query: 64   IYKEKTK 71
            IYKEKTK
Sbjct: 1184 IYKEKTK 1190

[Close]

BLAST of CsaV3_1G044230 vs. TrEMBL
Match: tr|A0A2G9G5C2|A0A2G9G5C2_9LAMI (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_27104 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.7e-15
Identity = 44/70 (62.86%), Postives = 51/70 (72.86%), Query Frame = 0


Query: 1   MSNGMCHYALVFGKVCYLPLKLKHKALWTCKKLNFNHHAAGEARLLQLIELKEWGSQSYE 60
           M  GM  Y+L+FGK C+L +KLKH A W  KKLNF+  AAGE RLLQL  LKE+  Q+YE
Sbjct: 37  MPIGMFSYSLIFGKACHLHIKLKHNAYWAIKKLNFDKQAAGEKRLLQLNVLKEFRLQAYE 96

Query: 61  NVKIYKEKTK 71
           N KIYKEK K
Sbjct: 97  NAKIYKEKRK 106

[Close]

BLAST of CsaV3_1G044230 vs. TrEMBL
Match: tr|A0A2G9HBV9|A0A2G9HBV9_9LAMI (DNA-directed DNA polymerase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_12579 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.7e-15
Identity = 43/67 (64.18%), Postives = 51/67 (76.12%), Query Frame = 0


Query: 4    GMCHYALVFGKVCYLPLKLKHKALWTCKKLNFNHHAAGEARLLQLIELKEWGSQSYENVK 63
            GM  Y LVFGK C+LP++L+H A W  +KLNF+  AAGE RLLQL EL E+  Q+YEN K
Sbjct: 1120 GMSPYKLVFGKACHLPVELEHNAYWAIRKLNFDMQAAGEKRLLQLNELDEFRLQAYENAK 1179

Query: 64   IYKEKTK 71
            IYKEKTK
Sbjct: 1180 IYKEKTK 1186

[Close]

BLAST of CsaV3_1G044230 vs. TrEMBL
Match: tr|A0A2G9GEK6|A0A2G9GEK6_9LAMI (DNA-directed DNA polymerase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_23747 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 6.3e-15
Identity = 42/67 (62.69%), Postives = 51/67 (76.12%), Query Frame = 0


Query: 4    GMCHYALVFGKVCYLPLKLKHKALWTCKKLNFNHHAAGEARLLQLIELKEWGSQSYENVK 63
            GM  Y LVFGK C+LP++L+H A W  +KLNF+  AAG+ RLLQL EL E+  Q+YEN K
Sbjct: 1200 GMSPYGLVFGKTCHLPVELEHNAYWVIRKLNFDMQAAGQKRLLQLNELDEFRLQAYENAK 1259

Query: 64   IYKEKTK 71
            IYKEKTK
Sbjct: 1260 IYKEKTK 1266

The following BLAST results are available for this feature:

BLAST of CsaV3_1G044230 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008464670.1	3.5e-17	67.16	PREDICTED: uncharacterized protein LOC103502497 [Cucumis melo]	[more]
XP_015940424.1	8.6e-16	62.69	uncharacterized protein K02A2.6-like [Arachis duranensis]	[more]
PIN11732.1	3.3e-15	65.67	DNA-directed DNA polymerase [Handroanthus impetiginosus]	[more]
XP_015969090.1	4.3e-15	64.18	uncharacterized protein LOC107492562 [Arachis duranensis]	[more]
PIN00392.1	5.6e-15	62.86	hypothetical protein CDL12_27104 [Handroanthus impetiginosus]	[more]

BLAST of CsaV3_1G044230 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G044230 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G044230 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CM09\|A0A1S3CM09_CUCME	2.3e-17	67.16	uncharacterized protein LOC103502497 OS=Cucumis melo OX=3656 GN=LOC103502497 PE=...	[more]
tr\|A0A2G9H2I8\|A0A2G9H2I8_9LAMI	2.2e-15	65.67	DNA-directed DNA polymerase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_156...	[more]
tr\|A0A2G9G5C2\|A0A2G9G5C2_9LAMI	3.7e-15	62.86	Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_27104 P...	[more]
tr\|A0A2G9HBV9\|A0A2G9HBV9_9LAMI	3.7e-15	64.18	DNA-directed DNA polymerase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_125...	[more]
tr\|A0A2G9GEK6\|A0A2G9GEK6_9LAMI	6.3e-15	62.69	DNA-directed DNA polymerase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_237...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G044230.1	CsaV3_1G044230.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G044230	Silver-seed gourd	carcucB0573
CsaV3_1G044230	Silver-seed gourd	carcucB1010
CsaV3_1G044230	Cucumber (Gy14) v2	cgybcucB001
CsaV3_1G044230	Cucumber (Gy14) v1	cgycucB542
CsaV3_1G044230	Cucurbita maxima (Rimu)	cmacucB0066
CsaV3_1G044230	Cucurbita maxima (Rimu)	cmacucB0099
CsaV3_1G044230	Cucurbita moschata (Rifu)	cmocucB0053
CsaV3_1G044230	Cucurbita moschata (Rifu)	cmocucB0090
CsaV3_1G044230	Cucurbita pepo (Zucchini)	cpecucB0000
CsaV3_1G044230	Cucurbita pepo (Zucchini)	cpecucB0428
CsaV3_1G044230	Wild cucumber (PI 183967)	cpicucB000
CsaV3_1G044230	Bottle gourd (USVL1VR-Ls)	cuclsiB068
CsaV3_1G044230	Melon (DHL92) v3.5.1	cucmeB044
CsaV3_1G044230	Melon (DHL92) v3.6.1	cucmedB041
CsaV3_1G044230	Watermelon (Charleston Gray)	cucwcgB041
CsaV3_1G044230	Watermelon (97103) v1	cucwmB016
CsaV3_1G044230	Watermelon (97103) v2	cucwmbB033
CsaV3_1G044230	Wax gourd	cucwgoB115