CsaV3_1G041830 (gene) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGTTCAGTAAGTTAACCAAGCGTGGCTTTTGTACGGCAATATCATCACGACCTTGGCTTTTTGTGGGGTTGGGAAACCCTGGAGAGAAGTTCAGAGGAACTAGGCACAATGTAATCACTGTACCGTTTTACGTTGTTCATCTTGAATCACATTTTGATTTTGTAATGGGAGGTATTCGTTCAGTCATTCTTATTTTGGTTCAGTACAGGTGGGCTTTGAGATGATTGATGTGTTTGCTGAGTCTGTTGGAATTCCAATGAATAGGGTTCACTGTAAAGCTGTGTTTGGTGAAGGTATGTTCACTTTTTATGTTATAATTTTTTGTTTCATCTGTTAAGTGTTTTCAGGTGTTATTGTTGTTTGATTGCATGAAGTTCAAAGATATTTTGGCTATTGATGTCAGGTTTTGTTGGGGACATCCCTGTTTTTCTGGCAAAGCCTCAAACTTACATGAACCTGAGTGGTGAATCTGTATGTGATTGAGAAACTTCTTTTGGCTTCTGTCTTCTTATAAGTTAGGTTTCTTGTAGTCTTAGACTCTTAAGTTTTTATTTTTAGAGTTCATAGATTCATTTGAGTGAATTCATCTTGCAAAATTATATCGACTTTGAAGTTAGGAATACAGTTCCTGCGAAGGCTATTGTAGCTAGTTCAATACATGTCAATGATATCTTTTTTACCGAGACTGGTTTGATGTCATAAATCTTGTTTTTGTCATCATACTGCAGGCAGGACCACTTGCAGCTTATTACAAGCTACCTCTGAACCGTGTGCTCGTGGTAAATCCTTATGTGCATTTCAATCATTCTTTTTCCTCATTAGAGTTCTTAAATGAACAACGCCTCGGCATTGTTTTGAGTATTTTACTGCTGCAGTTTCACGATGACATGACCTTACCTTGTGGAGTGCTTCGGCTTCAACACAATGGAGGACACGGCTACCACAATGGGTATCATTGAAATCGTTTTGTTAATTTTTTTGTTTTTTATATTTTTGTCGTCTTCTATTGTAGCCTATTTCCACTCTATAACCCCAATCCCTTTGTCTCTACACCTTACAACATACATTTGACTAGTTTTTTTATAATAAGAAATTGAACTTTCACTGAGAAAGAAATGAAATCACAAGGGCGTCCAATAAAAAAATACCCCAGGAAAGGAGACTCAACTAAATAAAAGGGCTCCAATCAACATCATGTAAAATAAGACCAATAATCACAAAGAGGCATTTCATCGGTGCCCAAAGAGAAATATTGAACCTGTCAAGGGACCAAGCATTCATAGGTGCCTCTCAAGGCTCTTTAAAGGTCCCGTTCCTCTTTCCCCTCAAACTCCACAACAGAAAACAAATCCTTGCTTGCAGAAACAACTTCATCTTCTGAACAAAAGCTGGATGAAGAAAAGGAACTCCTTGATCATCTCCTCATAACCTCTGTGTCTAAAACATTGAAAGCCAAACACATCAAAACAGCACAGACATAATGAAGTCACAACTCCAAGGAATATCATTATGGTCTTCTGATGGAACACCAAGTTGTGTTCAATCAATAGAACTTTATCGATAATAGATTCTTCGTTCGAAGACAAGAACAATGAAAGAAGGAACAAATCGAATTGAGAATATCTCAATTCGGTTACAATATCTCTCTCTGTTACCTTATCTCTCGAAGTGCACAGAATTCCTTACTAATCTCAAAACTTAACTAACTTTCCCTCCAAGATTACAATTCTATTTATATTGCACATTCTAACTAACTCACTTAACCGACTCAGATGTGCCAGCACTAACACTCTCTTTCTTCTTCCCTCTTCTACTATATTGGTGAATGATAGGGGGTCTATCATCTTCCTCCACTCTCCAGCAGCAAAGAATCCAACAAAAAGGCCCGATCAAAGTAGACATCTTTCTTGCAAGCCGATTTGAAGTGTTAACCCTTCCATGGATGACCTGCTTACCACACAAACTGAATCTTTGGGATTTTCACCTTCCATAGATTAAATTCATTGACTATTTTTATTTGAAGAGAAAACGATCCAATTGGAGTTTGTAAGATTATTTATCACTTCAGATTTAGTGTCCAGCAGGCAAGAGCGATGCTTATCTGATATATCCTATTTGAATTTCTTAGTTATAGTCGGTCATGTCAGTGAATCGCTCCATTATAGGCTCCTAAAGAATCTAAGCATAGCATTTGAGGGATCAAGACAGCTGTACATCTTCAATACGACTATCAAATGCTATTGCCTCAAAAAAATTTAAAAAAAAGAAAAAAACCCTGAATGCTATCTATTTCCACGAAGGTTTTTCAACACAATTCCTCTAAAATTGACATTATGCCGGCATGCTACAACTTTAACTTTATATATATTTTTTGAGACATACTTTTTATTGTCCATGCTTGTAAATTTGCTGGCACTATTCTTTCTTTTAGTAAAACCCTCACGACTTCTATTCTATGTTGCCTTTCTGGTACATCTTGAAATTGATTTTTTATTTTAGGCTGAAGAGTGTCATTTCTCATTTTCGAGGGAACAGAGAGTTTGCTAGGTTAAGAATTGGTAAGTTTTGTTGCCTACGCTATTTTGTTGTTTTTTATGTTTTCTCCATTCTTAGAACATTTTTCTTTCTAGGCATTGGAAGGCCACCTGGTCAAATGGATCCCAAAGCATTCTTGCTTCAAAAGTTCAATAACACTGCACAAGAACGAGTGAGCCTTTTTGCTGATTATATTACACAAAACATATAGTTGAAACTTTTCTATCTTTCCTAGTTTCATTGAGCCATCACGTGTTTCATCCACACCACAACTTACTTGCTTTGCTCATATGTAACTCTCTCACTCTCCATTCTTTTGCTAAAAGTGCATACTTTTGGAAAATGTATTTTGGATCCTTTTTATGGGATGTTTTTGTTAGGAACTAAGGTAGTATGAGATGCCTTTGTCCCACATTGGTTAGAATGGGATGACCAACGAGGTTCTTAAGTGACTTGGCTCTCCCACCCCAATAGCTAGCCTTTTGGGGTGTGATTCTTCAAAGTTCTTTAAATACCTGACAGTTTTCAAATATAGTAAATTAAGCCAAACTTTACTAGGAAAATCTATCATTGTCTATCACATATGACATTTTGCTATATTTTCAACCGTTTTTTCATTTATAACGATTACCCCTTTTTAATTCCATTTTTTTTATTGTAAATAATTTGTATCTTCACATCAGTTATTCCTTTTGCTGACTCTGATGTAATAAGAATAAGAATAGAGATAGCCTAAGTAGAAAGAGATAGCTAAACTACAAGATAGTTAGAACAGTTAGGATACTTAACTGTTTTGTAACAACTTCCTTATAACTACTTTGTTTTGTAACAACTTCCTTATAACTACTTTGTAACTAACTTACAAAGCTCTTAATAAATAACTCATCTCTTAGCCTTTGAAGGCATAAAATTCTCAAAGGCTAAAATTCAGTTTGAGAAATTAATCCGACTTTGAATTACATCAGACTCATTGCAAATAATGCTGATTTCATTATGCTTAATTAGTATCCATCCTAGCTTAACAATTACTTTTATTTTTGTTTAAAAAGATTGATACTGCTTTACAAGAAGGAGTTGGGGCATTGAAGCTCCTATTGTCTCACAGTTTGTTCGAGAGTGCAAGACACTTCAACCACGAACAAAAATACAAGCATATAAGGCTACAAACCATGCCAGTATGA ATGTTCAGTAAGTTAACCAAGCGTGGCTTTTGTACGGCAATATCATCACGACCTTGGCTTTTTGTGGGGTTGGGAAACCCTGGAGAGAAGTTCAGAGGAACTAGGCACAATGTGGGCTTTGAGATGATTGATGTGTTTGCTGAGTCTGTTGGAATTCCAATGAATAGGGTTCACTGTAAAGCTGTGTTTGGTGAAGGTTTTGTTGGGGACATCCCTGTTTTTCTGGCAAAGCCTCAAACTTACATGAACCTGAGTGGTGAATCTGCAGGACCACTTGCAGCTTATTACAAGCTACCTCTGAACCGTGTGCTCGTGGTAAATCCTTATGTGCATTTCAATCATTCTTTTTCCTCATTAGAGTTCTTAAATGAACAACGCCTCGGCATTGTTTTGAGTATTTTACTGCTGCAGTTTCACGATGACATGACCTTACCTTGTGGAGTGCTTCGGCTTCAACACAATGGAGGACACGGCTACCACAATGGGCTGAAGAGTGTCATTTCTCATTTTCGAGGGAACAGAGAGTTTGCTAGGTTAAGAATTGGCATTGGAAGGCCACCTGGTCAAATGGATCCCAAAGCATTCTTGCTTCAAAAGTTCAATAACACTGCACAAGAACGAATTGATACTGCTTTACAAGAAGGAGTTGGGGCATTGAAGCTCCTATTGTCTCACAGTTTGTTCGAGAGTGCAAGACACTTCAACCACGAACAAAAATACAAGCATATAAGGCTACAAACCATGCCAGTATGA ATGTTCAGTAAGTTAACCAAGCGTGGCTTTTGTACGGCAATATCATCACGACCTTGGCTTTTTGTGGGGTTGGGAAACCCTGGAGAGAAGTTCAGAGGAACTAGGCACAATGTGGGCTTTGAGATGATTGATGTGTTTGCTGAGTCTGTTGGAATTCCAATGAATAGGGTTCACTGTAAAGCTGTGTTTGGTGAAGGTTTTGTTGGGGACATCCCTGTTTTTCTGGCAAAGCCTCAAACTTACATGAACCTGAGTGGTGAATCTGCAGGACCACTTGCAGCTTATTACAAGCTACCTCTGAACCGTGTGCTCGTGGTAAATCCTTATGTGCATTTCAATCATTCTTTTTCCTCATTAGAGTTCTTAAATGAACAACGCCTCGGCATTGTTTTGAGTATTTTACTGCTGCAGTTTCACGATGACATGACCTTACCTTGTGGAGTGCTTCGGCTTCAACACAATGGAGGACACGGCTACCACAATGGGCTGAAGAGTGTCATTTCTCATTTTCGAGGGAACAGAGAGTTTGCTAGGTTAAGAATTGGCATTGGAAGGCCACCTGGTCAAATGGATCCCAAAGCATTCTTGCTTCAAAAGTTCAATAACACTGCACAAGAACGAATTGATACTGCTTTACAAGAAGGAGTTGGGGCATTGAAGCTCCTATTGTCTCACAGTTTGTTCGAGAGTGCAAGACACTTCAACCACGAACAAAAATACAAGCATATAAGGCTACAAACCATGCCAGTATGA MFSKLTKRGFCTAISSRPWLFVGLGNPGEKFRGTRHNVGFEMIDVFAESVGIPMNRVHCKAVFGEGFVGDIPVFLAKPQTYMNLSGESAGPLAAYYKLPLNRVLVVNPYVHFNHSFSSLEFLNEQRLGIVLSILLLQFHDDMTLPCGVLRLQHNGGHGYHNGLKSVISHFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNNTAQERIDTALQEGVGALKLLLSHSLFESARHFNHEQKYKHIRLQTMPV
BLAST of CsaV3_1G041830 vs. NCBI nr
Match: XP_004144094.2 (PREDICTED: peptidyl-tRNA hydrolase, mitochondrial isoform X1 [Cucumis sativus] >KGN66380.1 hypothetical protein Csa_1G600200 [Cucumis sativus]) HSP 1 Score: 443.0 bits (1138), Expect = 6.9e-121 Identity = 218/250 (87.20%), Postives = 218/250 (87.20%), Query Frame = 0
BLAST of CsaV3_1G041830 vs. NCBI nr
Match: XP_008451022.1 (PREDICTED: peptidyl-tRNA hydrolase, mitochondrial isoform X1 [Cucumis melo]) HSP 1 Score: 423.3 bits (1087), Expect = 5.7e-115 Identity = 208/250 (83.20%), Postives = 211/250 (84.40%), Query Frame = 0
BLAST of CsaV3_1G041830 vs. NCBI nr
Match: XP_022988207.1 (peptidyl-tRNA hydrolase, mitochondrial isoform X1 [Cucurbita maxima] >XP_022988208.1 peptidyl-tRNA hydrolase, mitochondrial isoform X1 [Cucurbita maxima]) HSP 1 Score: 412.9 bits (1060), Expect = 7.7e-112 Identity = 203/249 (81.53%), Postives = 210/249 (84.34%), Query Frame = 0
BLAST of CsaV3_1G041830 vs. NCBI nr
Match: XP_023532821.1 (peptidyl-tRNA hydrolase, mitochondrial-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023532822.1 peptidyl-tRNA hydrolase, mitochondrial-like isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 412.9 bits (1060), Expect = 7.7e-112 Identity = 203/249 (81.53%), Postives = 209/249 (83.94%), Query Frame = 0
BLAST of CsaV3_1G041830 vs. NCBI nr
Match: XP_022961338.1 (peptidyl-tRNA hydrolase, mitochondrial isoform X1 [Cucurbita moschata] >XP_022961339.1 peptidyl-tRNA hydrolase, mitochondrial isoform X1 [Cucurbita moschata]) HSP 1 Score: 410.2 bits (1053), Expect = 5.0e-111 Identity = 203/249 (81.53%), Postives = 209/249 (83.94%), Query Frame = 0
BLAST of CsaV3_1G041830 vs. TAIR10
Match: AT5G19830.1 (Peptidyl-tRNA hydrolase family protein) HSP 1 Score: 327.8 bits (839), Expect = 5.9e-90 Identity = 161/248 (64.92%), Postives = 187/248 (75.40%), Query Frame = 0
BLAST of CsaV3_1G041830 vs. TAIR10
Match: AT5G16140.1 (Peptidyl-tRNA hydrolase family protein) HSP 1 Score: 226.1 bits (575), Expect = 2.4e-59 Identity = 111/224 (49.55%), Postives = 140/224 (62.50%), Query Frame = 0
BLAST of CsaV3_1G041830 vs. TAIR10
Match: AT1G18440.1 (Peptidyl-tRNA hydrolase family protein) HSP 1 Score: 222.2 bits (565), Expect = 3.5e-58 Identity = 106/226 (46.90%), Postives = 145/226 (64.16%), Query Frame = 0
BLAST of CsaV3_1G041830 vs. TAIR10
Match: AT5G38290.2 (Peptidyl-tRNA hydrolase family protein) HSP 1 Score: 216.1 bits (549), Expect = 2.5e-56 Identity = 108/224 (48.21%), Postives = 134/224 (59.82%), Query Frame = 0
BLAST of CsaV3_1G041830 vs. Swiss-Prot
Match: sp|Q6NLS8|PTHM_ARATH (Peptidyl-tRNA hydrolase, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g19830 PE=2 SV=1) HSP 1 Score: 327.8 bits (839), Expect = 1.1e-88 Identity = 161/248 (64.92%), Postives = 187/248 (75.40%), Query Frame = 0
BLAST of CsaV3_1G041830 vs. Swiss-Prot
Match: sp|Q9M5P4|CRS2_MAIZE (Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Zea mays OX=4577 GN=CRS2 PE=1 SV=1) HSP 1 Score: 229.6 bits (584), Expect = 3.9e-59 Identity = 112/228 (49.12%), Postives = 144/228 (63.16%), Query Frame = 0
BLAST of CsaV3_1G041830 vs. Swiss-Prot
Match: sp|Q9LF14|CRS2B_ARATH (Chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CRS2B PE=2 SV=1) HSP 1 Score: 226.1 bits (575), Expect = 4.4e-58 Identity = 111/224 (49.55%), Postives = 140/224 (62.50%), Query Frame = 0
BLAST of CsaV3_1G041830 vs. Swiss-Prot
Match: sp|Q8GW64|PTHC_ARATH (Peptidyl-tRNA hydrolase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g18440 PE=2 SV=2) HSP 1 Score: 222.2 bits (565), Expect = 6.3e-57 Identity = 106/226 (46.90%), Postives = 145/226 (64.16%), Query Frame = 0
BLAST of CsaV3_1G041830 vs. Swiss-Prot
Match: sp|Q5N9Q7|PTHM_ORYSJ (Peptidyl-tRNA hydrolase, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0693900 PE=2 SV=1) HSP 1 Score: 218.4 bits (555), Expect = 9.1e-56 Identity = 105/222 (47.30%), Postives = 142/222 (63.96%), Query Frame = 0
BLAST of CsaV3_1G041830 vs. TrEMBL
Match: tr|A0A0A0LWX1|A0A0A0LWX1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G600200 PE=3 SV=1) HSP 1 Score: 443.0 bits (1138), Expect = 4.6e-121 Identity = 218/250 (87.20%), Postives = 218/250 (87.20%), Query Frame = 0
BLAST of CsaV3_1G041830 vs. TrEMBL
Match: tr|A0A1S3BPZ7|A0A1S3BPZ7_CUCME (peptidyl-tRNA hydrolase, mitochondrial isoform X1 OS=Cucumis melo OX=3656 GN=LOC103492429 PE=3 SV=1) HSP 1 Score: 423.3 bits (1087), Expect = 3.8e-115 Identity = 208/250 (83.20%), Postives = 211/250 (84.40%), Query Frame = 0
BLAST of CsaV3_1G041830 vs. TrEMBL
Match: tr|V4TEQ2|V4TEQ2_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10016635mg PE=3 SV=1) HSP 1 Score: 359.8 bits (922), Expect = 5.1e-96 Identity = 178/249 (71.49%), Postives = 193/249 (77.51%), Query Frame = 0
BLAST of CsaV3_1G041830 vs. TrEMBL
Match: tr|A0A067EGW2|A0A067EGW2_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g027742mg PE=3 SV=1) HSP 1 Score: 359.8 bits (922), Expect = 5.1e-96 Identity = 178/249 (71.49%), Postives = 193/249 (77.51%), Query Frame = 0
BLAST of CsaV3_1G041830 vs. TrEMBL
Match: tr|A0A059CQE8|A0A059CQE8_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_C01519 PE=3 SV=1) HSP 1 Score: 359.0 bits (920), Expect = 8.7e-96 Identity = 179/249 (71.89%), Postives = 192/249 (77.11%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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