CsaV3_1G039290 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G039290
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptionprotein CUP-SHAPED COTYLEDON 3-like
Locationchr1 : 24738869 .. 24739368 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGCCGAAAGTGATGACTCTGACAAGCAGCTAAGAAATTTCAGGCCTCGACGTAAACTTAAATACCATAAGGAACGAGACCATGTAGAGTCTTCACAAAGTGTTCGATCGATAGATCTTTCCTCTGTCCACCCTCGTAAAGATGCCTGCATAAAATCGTGCGGAAATGATGACTTTGACAGAGCAGTAAGAAATTTCAGCTCTCAACGTCAACCTAAATCCCATAAGGTTCTAGACCATATCAAAGCTTCACAAAATGTCCAGTCGAAGAAGGAAACTCAACTCCAAGTAGTGTCATCCCTTGGCAAGGTGAGAGAACAGAACAAAACGCTAAACATAGGAAAATTTCATATCTGTTTTTATTATTAAAAGCAACTTGAATGACTTTAATTCTTCCATGTTTACATCAAGCGTCGTTCAATTTTCAGGTTAAAGCAGTTCCAGAACGAATTAAAGTTGTCAAACCAGCTGCAACTTCAAATAAAGATACTAAGTGA

mRNA sequence

ATGAAGGCCGAAAGTGATGACTCTGACAAGCAGCTAAGAAATTTCAGGCCTCGACGTAAACTTAAATACCATAAGGAACGAGACCATGTAGAGTCTTCACAAAGTGTTCGATCGATAGATCTTTCCTCTGTCCACCCTCGTAAAGATGCCTGCATAAAATCGTGCGGAAATGATGACTTTGACAGAGCAGTAAGAAATTTCAGCTCTCAACGTCAACCTAAATCCCATAAGGTTCTAGACCATATCAAAGCTTCACAAAATGTCCAGTCGAAGAAGGAAACTCAACTCCAAGTAGTGTCATCCCTTGGCAAGGTTAAAGCAGTTCCAGAACGAATTAAAGTTGTCAAACCAGCTGCAACTTCAAATAAAGATACTAAGTGA

Coding sequence (CDS)

ATGAAGGCCGAAAGTGATGACTCTGACAAGCAGCTAAGAAATTTCAGGCCTCGACGTAAACTTAAATACCATAAGGAACGAGACCATGTAGAGTCTTCACAAAGTGTTCGATCGATAGATCTTTCCTCTGTCCACCCTCGTAAAGATGCCTGCATAAAATCGTGCGGAAATGATGACTTTGACAGAGCAGTAAGAAATTTCAGCTCTCAACGTCAACCTAAATCCCATAAGGTTCTAGACCATATCAAAGCTTCACAAAATGTCCAGTCGAAGAAGGAAACTCAACTCCAAGTAGTGTCATCCCTTGGCAAGGTTAAAGCAGTTCCAGAACGAATTAAAGTTGTCAAACCAGCTGCAACTTCAAATAAAGATACTAAGTGA

Protein sequence

MKAESDDSDKQLRNFRPRRKLKYHKERDHVESSQSVRSIDLSSVHPRKDACIKSCGNDDFDRAVRNFSSQRQPKSHKVLDHIKASQNVQSKKETQLQVVSSLGKVKAVPERIKVVKPAATSNKDTK
Homology
[Close]
BLAST of CsaV3_1G039290 vs. NCBI nr
Match: KGN66115.1 (hypothetical protein Csa_1G572360 [Cucumis sativus])

HSP 1 Score: 202.2 bits (513), Expect = 1.0e-48
Identity = 104/108 (96.30%), Postives = 107/108 (99.07%), Query Frame = 0 

Query: 1   MKAESDDSDKQLRNFRPRRKLKYHKERDHVESSQSVRSIDLSSVHPRKDACIKSCGNDDF 60
           MKAESDDSDKQLRNFRPRRKLKYHKERDHVESSQSVRSIDLSSVHPRKDACIKSCGNDDF
Sbjct: 1   MKAESDDSDKQLRNFRPRRKLKYHKERDHVESSQSVRSIDLSSVHPRKDACIKSCGNDDF 60

Query: 61  DRAVRNFSSQRQPKSHKVLDHIKASQNVQSKKETQLQVVSSLGKVKAV 109
           DRAVRNFSSQRQPKSHKVLDHIKASQNVQSKKETQLQVVSSLGK +++
Sbjct: 61  DRAVRNFSSQRQPKSHKVLDHIKASQNVQSKKETQLQVVSSLGKRRSI 108

[Close]
BLAST of CsaV3_1G039290 vs. NCBI nr
Match: XP_016900940.1 (PREDICTED: uncharacterized protein LOC103492204 [Cucumis melo])

HSP 1 Score: 124.0 bits (310), Expect = 3.6e-25
Identity = 65/75 (86.67%), Postives = 69/75 (92.00%), Query Frame = 0 

Query: 51  CIKSCGNDDFDRAVRNFSSQRQPKSHKVLDHIKASQNVQSKKETQLQVVSSLGKVKAVPE 110
           CI SCG+ D DRAVRNFS QRQPKSHKV DHIKASQNVQSKKETQLQ+VSSL KVKAVPE
Sbjct: 5   CITSCGSADSDRAVRNFSPQRQPKSHKVRDHIKASQNVQSKKETQLQLVSSLSKVKAVPE 64

Query: 111 RIKVVKPAATSNKDT 126
           RI+VVKPAA+SNKDT
Sbjct: 65  RIEVVKPAASSNKDT 79

[Close]
BLAST of CsaV3_1G039290 vs. NCBI nr
Match: XP_008450706.1 (PREDICTED: protein CUP-SHAPED COTYLEDON 3-like [Cucumis melo])

HSP 1 Score: 102.1 bits (253), Expect = 1.5e-18
Identity = 54/92 (58.70%), Postives = 67/92 (72.83%), Query Frame = 0 

Query: 33  SQSVRSIDLSSVHPRKDACIKSCGNDDFDRAVRNFSSQRQPKSHKVLDHIKASQNVQSKK 92
           ++S+  I  S   P     ++   +DD DR  RNFSSQ QPKSHK LDH+   QNVQSK+
Sbjct: 321 TKSIPMIKESRRSPLTSKILRLDHSDDSDRGTRNFSSQHQPKSHKALDHVDTPQNVQSKR 380

Query: 93  ETQLQVVSSLGKVKAVPERIKVVKPAATSNKD 125
           ETQ+QVVSSL K +AVP+RIK+V+PAATSNKD
Sbjct: 381 ETQIQVVSSLSKAEAVPKRIKIVRPAATSNKD 412

[Close]
BLAST of CsaV3_1G039290 vs. NCBI nr
Match: XP_011659914.1 (PREDICTED: NAC transcription factor 25-like [Cucumis sativus] >KGN66118.1 hypothetical protein Csa_1G572390 [Cucumis sativus])

HSP 1 Score: 95.5 bits (236), Expect = 1.4e-16
Identity = 52/92 (56.52%), Postives = 65/92 (70.65%), Query Frame = 0 

Query: 33  SQSVRSIDLSSVHPRKDACIKSCGNDDFDRAVRNFSSQRQPKSHKVLDHIKASQNVQSKK 92
           ++S+  I  S   P     +K   +DD DR   NFSSQ QPKSHKVLDH+   QNVQSK+
Sbjct: 321 TKSIPMIKESRRSPLTSKILKFDHSDDSDRGTGNFSSQHQPKSHKVLDHVDTLQNVQSKR 380

Query: 93  ETQLQVVSSLGKVKAVPERIKVVKPAATSNKD 125
           ETQLQVV  L K +AVP++IK+V+PAATSN+D
Sbjct: 381 ETQLQVVPRLSKAEAVPKQIKIVRPAATSNED 412

[Close]
BLAST of CsaV3_1G039290 vs. NCBI nr
Match: XP_022974303.1 (uncharacterized protein LOC111472945 isoform X1 [Cucurbita maxima])

HSP 1 Score: 69.3 bits (168), Expect = 1.1e-08
Identity = 48/89 (53.93%), Postives = 58/89 (65.17%), Query Frame = 0 

Query: 40  DLSSVHPRKDACIKSCG----NDDFDRAVRNFSSQRQPKSHKVLDHIKASQNVQSKKETQ 99
           DLSSV PR D  +++ G    +DD DR       Q QP+S KV++H K SQNVQ K++TQ
Sbjct: 344 DLSSVRPRGDE-LQTNGISYLSDDSDRETITLRFQSQPRSDKVVNHAKDSQNVQWKRKTQ 403

Query: 100 LQVVSSLGKVKAVPERIKVVKPAATSNKD 125
           LQVVSS  K KAV +  KV   AATSNKD
Sbjct: 404 LQVVSSPDKAKAVSKWKKVDGAAATSNKD 431

[Close]
BLAST of CsaV3_1G039290 vs. TrEMBL
Match: tr|A0A0A0LW42|A0A0A0LW42_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G572360 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 6.9e-49
Identity = 104/108 (96.30%), Postives = 107/108 (99.07%), Query Frame = 0 

Query: 1   MKAESDDSDKQLRNFRPRRKLKYHKERDHVESSQSVRSIDLSSVHPRKDACIKSCGNDDF 60
           MKAESDDSDKQLRNFRPRRKLKYHKERDHVESSQSVRSIDLSSVHPRKDACIKSCGNDDF
Sbjct: 1   MKAESDDSDKQLRNFRPRRKLKYHKERDHVESSQSVRSIDLSSVHPRKDACIKSCGNDDF 60

Query: 61  DRAVRNFSSQRQPKSHKVLDHIKASQNVQSKKETQLQVVSSLGKVKAV 109
           DRAVRNFSSQRQPKSHKVLDHIKASQNVQSKKETQLQVVSSLGK +++
Sbjct: 61  DRAVRNFSSQRQPKSHKVLDHIKASQNVQSKKETQLQVVSSLGKRRSI 108

[Close]
BLAST of CsaV3_1G039290 vs. TrEMBL
Match: tr|A0A1S4DYZ1|A0A1S4DYZ1_CUCME (uncharacterized protein LOC103492204 OS=Cucumis melo OX=3656 GN=LOC103492204 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 2.4e-25
Identity = 65/75 (86.67%), Postives = 69/75 (92.00%), Query Frame = 0 

Query: 51  CIKSCGNDDFDRAVRNFSSQRQPKSHKVLDHIKASQNVQSKKETQLQVVSSLGKVKAVPE 110
           CI SCG+ D DRAVRNFS QRQPKSHKV DHIKASQNVQSKKETQLQ+VSSL KVKAVPE
Sbjct: 5   CITSCGSADSDRAVRNFSPQRQPKSHKVRDHIKASQNVQSKKETQLQLVSSLSKVKAVPE 64

Query: 111 RIKVVKPAATSNKDT 126
           RI+VVKPAA+SNKDT
Sbjct: 65  RIEVVKPAASSNKDT 79

[Close]
BLAST of CsaV3_1G039290 vs. TrEMBL
Match: tr|A0A1S3BQH1|A0A1S3BQH1_CUCME (protein CUP-SHAPED COTYLEDON 3-like OS=Cucumis melo OX=3656 GN=LOC103492206 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 9.7e-19
Identity = 54/92 (58.70%), Postives = 67/92 (72.83%), Query Frame = 0 

Query: 33  SQSVRSIDLSSVHPRKDACIKSCGNDDFDRAVRNFSSQRQPKSHKVLDHIKASQNVQSKK 92
           ++S+  I  S   P     ++   +DD DR  RNFSSQ QPKSHK LDH+   QNVQSK+
Sbjct: 321 TKSIPMIKESRRSPLTSKILRLDHSDDSDRGTRNFSSQHQPKSHKALDHVDTPQNVQSKR 380

Query: 93  ETQLQVVSSLGKVKAVPERIKVVKPAATSNKD 125
           ETQ+QVVSSL K +AVP+RIK+V+PAATSNKD
Sbjct: 381 ETQIQVVSSLSKAEAVPKRIKIVRPAATSNKD 412

[Close]
BLAST of CsaV3_1G039290 vs. TrEMBL
Match: tr|A0A0A0LWI7|A0A0A0LWI7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G572390 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 9.1e-17
Identity = 52/92 (56.52%), Postives = 65/92 (70.65%), Query Frame = 0 

Query: 33  SQSVRSIDLSSVHPRKDACIKSCGNDDFDRAVRNFSSQRQPKSHKVLDHIKASQNVQSKK 92
           ++S+  I  S   P     +K   +DD DR   NFSSQ QPKSHKVLDH+   QNVQSK+
Sbjct: 321 TKSIPMIKESRRSPLTSKILKFDHSDDSDRGTGNFSSQHQPKSHKVLDHVDTLQNVQSKR 380

Query: 93  ETQLQVVSSLGKVKAVPERIKVVKPAATSNKD 125
           ETQLQVV  L K +AVP++IK+V+PAATSN+D
Sbjct: 381 ETQLQVVPRLSKAEAVPKQIKIVRPAATSNED 412

The following BLAST results are available for this feature:
BLAST of CsaV3_1G039290 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN66115.11.0e-4896.30hypothetical protein Csa_1G572360 [Cucumis sativus][more]
XP_016900940.13.6e-2586.67PREDICTED: uncharacterized protein LOC103492204 [Cucumis melo][more]
XP_008450706.11.5e-1858.70PREDICTED: protein CUP-SHAPED COTYLEDON 3-like [Cucumis melo][more]
XP_011659914.11.4e-1656.52PREDICTED: NAC transcription factor 25-like [Cucumis sativus] >KGN66118.1 hypoth... [more]
XP_022974303.11.1e-0853.93uncharacterized protein LOC111472945 isoform X1 [Cucurbita maxima][more]
BLAST of CsaV3_1G039290 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G039290 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G039290 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LW42|A0A0A0LW42_CUCSA6.9e-4996.30Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G572360 PE=4 SV=1[more]
tr|A0A1S4DYZ1|A0A1S4DYZ1_CUCME2.4e-2586.67uncharacterized protein LOC103492204 OS=Cucumis melo OX=3656 GN=LOC103492204 PE=... [more]
tr|A0A1S3BQH1|A0A1S3BQH1_CUCME9.7e-1958.70protein CUP-SHAPED COTYLEDON 3-like OS=Cucumis melo OX=3656 GN=LOC103492206 PE=4... [more]
tr|A0A0A0LWI7|A0A0A0LWI7_CUCSA9.1e-1756.52Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G572390 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G039290.1CsaV3_1G039290.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..43

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G039290CSPI01G26960Wild cucumber (PI 183967)cpicucB000
CsaV3_1G039290CsGy1G026150Cucumber (Gy14) v2cgybcucB001
CsaV3_1G039290Cla97C03G067000Watermelon (97103) v2cucwmbB041
CsaV3_1G039290Bhi02G001780Wax gourdcucwgoB113
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G039290Silver-seed gourdcarcucB0587
CsaV3_1G039290Cucumber (Gy14) v1cgycucB259
CsaV3_1G039290Cucurbita maxima (Rimu)cmacucB0114
CsaV3_1G039290Cucurbita moschata (Rifu)cmocucB0102
CsaV3_1G039290Cucurbita pepo (Zucchini)cpecucB0817
CsaV3_1G039290Bottle gourd (USVL1VR-Ls)cuclsiB068
CsaV3_1G039290Melon (DHL92) v3.5.1cucmeB042
CsaV3_1G039290Melon (DHL92) v3.6.1cucmedB039
CsaV3_1G039290Watermelon (Charleston Gray)cucwcgB050
CsaV3_1G039290Watermelon (97103) v1cucwmB025
CsaV3_1G039290Wax gourdcucwgoB090