CsaV3_1G038280 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G038280
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 24065912 .. 24066088 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTGAGGGCAATGGTATGAAGGATGTAATGGTTGTAAAGCTTAATTTTGTAAGGAAGCAAATATGCTATGAGGTTATGTGGAATGGGTCTAGAAAAAAAATTGAAGTTGATTGGTCAAATATTGTGGGAATTAGAGCTTCTTTGAATGACAATGGATTTGGAATTCTTGAAGTCGAG

mRNA sequence

TTTGAGGGCAATGGTATGAAGGATGTAATGGTTGTAAAGCTTAATTTTGTAAGGAAGCAAATATGCTATGAGGTTATGTGGAATGGGTCTAGAAAAAAAATTGAAGTTGATTGGTCAAATATTGTGGGAATTAGAGCTTCTTTGAATGACAATGGATTTGGAATTCTTGAAGTCGAG

Coding sequence (CDS)

TTTGAGGGCAATGGTATGAAGGATGTAATGGTTGTAAAGCTTAATTTTGTAAGGAAGCAAATATGCTATGAGGTTATGTGGAATGGGTCTAGAAAAAAAATTGAAGTTGATTGGTCAAATATTGTGGGAATTAGAGCTTCTTTGAATGACAATGGATTTGGAATTCTTGAAGTCGAG

Protein sequence

FEGNGMKDVMVVKLNFVRKQICYEVMWNGSRKKIEVDWSNIVGIRASLNDNGFGILEVE
Homology
[Close]
BLAST of CsaV3_1G038280 vs. NCBI nr
Match: KGN66012.1 (hypothetical protein Csa_1G561920 [Cucumis sativus])

HSP 1 Score: 126.7 bits (317), Expect = 2.6e-26
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0 

Query: 1  FEGNGMKDVMVVKLNFVRKQICYEVMWNGSRKKIEVDWSNIVGIRASLNDNGFGILEVE 60
          FEGNGMKDVMVVKLNFVRKQICYEVMWNGSRKKIEVDWSNIVGIRASLNDNGFGILEVE
Sbjct: 24 FEGNGMKDVMVVKLNFVRKQICYEVMWNGSRKKIEVDWSNIVGIRASLNDNGFGILEVE 82

[Close]
BLAST of CsaV3_1G038280 vs. NCBI nr
Match: XP_008450548.1 (PREDICTED: uncharacterized protein LOC103492115 [Cucumis melo])

HSP 1 Score: 102.1 bits (253), Expect = 6.8e-19
Identity = 47/59 (79.66%), Postives = 51/59 (86.44%), Query Frame = 0 

Query: 1  FEGNGMKDVMVVKLNFVRKQICYEVMWNGSRKKIEVDWSNIVGIRASLNDNGFGILEVE 60
          FEGN  KD +VVKLNF  KQICYE+MWNGSRKKIEVDWSNI+GI+ASLND   GILEVE
Sbjct: 24 FEGNTEKDELVVKLNFASKQICYELMWNGSRKKIEVDWSNIMGIKASLNDKEHGILEVE 82

[Close]
BLAST of CsaV3_1G038280 vs. NCBI nr
Match: XP_022968797.1 (uncharacterized protein LOC111467928 isoform X1 [Cucurbita maxima])

HSP 1 Score: 69.7 bits (169), Expect = 3.7e-09
Identity = 31/50 (62.00%), Postives = 40/50 (80.00%), Query Frame = 0 

Query: 10 MVVKLNFVRKQICYEVMWNGSRKKIEVDWSNIVGIRASLNDNGFGILEVE 60
          +VVK  FV+KQ+CYE+  NG R KIE+DWSNI+GIRA++  N  G+LEVE
Sbjct: 18 LVVKGLFVKKQLCYEISSNGCRVKIEIDWSNIIGIRAAMKKNEPGVLEVE 67

[Close]
BLAST of CsaV3_1G038280 vs. NCBI nr
Match: XP_022968799.1 (uncharacterized protein LOC111467928 isoform X3 [Cucurbita maxima])

HSP 1 Score: 69.7 bits (169), Expect = 3.7e-09
Identity = 31/50 (62.00%), Postives = 40/50 (80.00%), Query Frame = 0 

Query: 10 MVVKLNFVRKQICYEVMWNGSRKKIEVDWSNIVGIRASLNDNGFGILEVE 60
          +VVK  FV+KQ+CYE+  NG R KIE+DWSNI+GIRA++  N  G+LEVE
Sbjct: 18 LVVKGLFVKKQLCYEISSNGCRVKIEIDWSNIIGIRAAMKKNEPGVLEVE 67

[Close]
BLAST of CsaV3_1G038280 vs. NCBI nr
Match: XP_022968798.1 (uncharacterized protein LOC111467928 isoform X2 [Cucurbita maxima])

HSP 1 Score: 69.7 bits (169), Expect = 3.7e-09
Identity = 31/50 (62.00%), Postives = 40/50 (80.00%), Query Frame = 0 

Query: 10 MVVKLNFVRKQICYEVMWNGSRKKIEVDWSNIVGIRASLNDNGFGILEVE 60
          +VVK  FV+KQ+CYE+  NG R KIE+DWSNI+GIRA++  N  G+LEVE
Sbjct: 18 LVVKGLFVKKQLCYEISSNGCRVKIEIDWSNIIGIRAAMKKNEPGVLEVE 67

[Close]
BLAST of CsaV3_1G038280 vs. TAIR10
Match: AT4G30780.1 (unknown protein)

HSP 1 Score: 40.8 bits (94), Expect = 3.4e-04
Identity = 16/47 (34.04%), Postives = 31/47 (65.96%), Query Frame = 0 

Query: 10  MVVKLNFVRKQICYEVMWNGSRKKIEVDWSNIVGIRASLNDNGFGIL 57
           +V K  F + ++ +EV+  G + KIE+ WS+I+ ++A+  ++G G L
Sbjct: 161 LVAKCYFAKHKLVWEVLEQGLKSKIEIQWSDIMALKANCPEDGPGTL 207

[Close]
BLAST of CsaV3_1G038280 vs. TAIR10
Match: AT2G24100.1 (unknown protein)

HSP 1 Score: 40.4 bits (93), Expect = 4.4e-04
Identity = 16/49 (32.65%), Postives = 32/49 (65.31%), Query Frame = 0 

Query: 10  MVVKLNFVRKQICYEVMWNGSRKKIEVDWSNIVGIRASLNDNGFGILEV 59
           +V K  F + ++ +EV+  G + KIE+ WS+I+ ++A+L ++  G L +
Sbjct: 134 LVAKCYFAKHKLVWEVLEQGLKSKIEIQWSDIMALKANLPEDEPGTLTI 182

[Close]
BLAST of CsaV3_1G038280 vs. TrEMBL
Match: tr|A0A0A0LYW9|A0A0A0LYW9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G561920 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.7e-26
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0 

Query: 1  FEGNGMKDVMVVKLNFVRKQICYEVMWNGSRKKIEVDWSNIVGIRASLNDNGFGILEVE 60
          FEGNGMKDVMVVKLNFVRKQICYEVMWNGSRKKIEVDWSNIVGIRASLNDNGFGILEVE
Sbjct: 24 FEGNGMKDVMVVKLNFVRKQICYEVMWNGSRKKIEVDWSNIVGIRASLNDNGFGILEVE 82

[Close]
BLAST of CsaV3_1G038280 vs. TrEMBL
Match: tr|A0A1S3BQG8|A0A1S3BQG8_CUCME (uncharacterized protein LOC103492115 OS=Cucumis melo OX=3656 GN=LOC103492115 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 4.5e-19
Identity = 47/59 (79.66%), Postives = 51/59 (86.44%), Query Frame = 0 

Query: 1  FEGNGMKDVMVVKLNFVRKQICYEVMWNGSRKKIEVDWSNIVGIRASLNDNGFGILEVE 60
          FEGN  KD +VVKLNF  KQICYE+MWNGSRKKIEVDWSNI+GI+ASLND   GILEVE
Sbjct: 24 FEGNTEKDELVVKLNFASKQICYELMWNGSRKKIEVDWSNIMGIKASLNDKEHGILEVE 82

[Close]
BLAST of CsaV3_1G038280 vs. TrEMBL
Match: tr|A0A1S3BQ39|A0A1S3BQ39_CUCME (uncharacterized protein LOC103492114 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103492114 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 5.7e-06
Identity = 24/50 (48.00%), Postives = 39/50 (78.00%), Query Frame = 0 

Query: 10  MVVKLNFVRKQICYEVMWNGSRKKIEVDWSNIVGIRASLNDNGFGILEVE 60
           +V K  F ++Q+ +E++ NG ++KIE++WSNI+GI+A L ++  GILEVE
Sbjct: 130 LVAKFYFAKRQLVWEILRNGLKQKIEIEWSNIIGIQAFLEEDKPGILEVE 179

[Close]
BLAST of CsaV3_1G038280 vs. TrEMBL
Match: tr|A0A1S3BPE4|A0A1S3BPE4_CUCME (uncharacterized protein LOC103492114 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103492114 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 5.7e-06
Identity = 24/50 (48.00%), Postives = 39/50 (78.00%), Query Frame = 0 

Query: 10  MVVKLNFVRKQICYEVMWNGSRKKIEVDWSNIVGIRASLNDNGFGILEVE 60
           +V K  F ++Q+ +E++ NG ++KIE++WSNI+GI+A L ++  GILEVE
Sbjct: 130 LVAKFYFAKRQLVWEILRNGLKQKIEIEWSNIIGIQAFLEEDKPGILEVE 179

[Close]
BLAST of CsaV3_1G038280 vs. TrEMBL
Match: tr|A0A0A0M1F5|A0A0A0M1F5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G561420 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 5.7e-06
Identity = 24/50 (48.00%), Postives = 39/50 (78.00%), Query Frame = 0 

Query: 10  MVVKLNFVRKQICYEVMWNGSRKKIEVDWSNIVGIRASLNDNGFGILEVE 60
           +V K  F ++Q+ +E++ NG ++KIE++WSNI+GI+A L ++  GILEVE
Sbjct: 130 LVAKFYFAKRQLVWEILRNGLKQKIEIEWSNIIGIQAFLEEDKPGILEVE 179

The following BLAST results are available for this feature:
BLAST of CsaV3_1G038280 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN66012.12.6e-26100.00hypothetical protein Csa_1G561920 [Cucumis sativus][more]
XP_008450548.16.8e-1979.66PREDICTED: uncharacterized protein LOC103492115 [Cucumis melo][more]
XP_022968797.13.7e-0962.00uncharacterized protein LOC111467928 isoform X1 [Cucurbita maxima][more]
XP_022968799.13.7e-0962.00uncharacterized protein LOC111467928 isoform X3 [Cucurbita maxima][more]
XP_022968798.13.7e-0962.00uncharacterized protein LOC111467928 isoform X2 [Cucurbita maxima][more]
BLAST of CsaV3_1G038280 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G30780.13.4e-0434.04unknown protein[more]
AT2G24100.14.4e-0432.65unknown protein[more]
BLAST of CsaV3_1G038280 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G038280 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LYW9|A0A0A0LYW9_CUCSA1.7e-26100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G561920 PE=4 SV=1[more]
tr|A0A1S3BQG8|A0A1S3BQG8_CUCME4.5e-1979.66uncharacterized protein LOC103492115 OS=Cucumis melo OX=3656 GN=LOC103492115 PE=... [more]
tr|A0A1S3BQ39|A0A1S3BQ39_CUCME5.7e-0648.00uncharacterized protein LOC103492114 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A1S3BPE4|A0A1S3BPE4_CUCME5.7e-0648.00uncharacterized protein LOC103492114 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A0A0M1F5|A0A0A0M1F5_CUCSA5.7e-0648.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G561420 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G038280.1CsaV3_1G038280.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G038280Lsi06G000570Bottle gourd (USVL1VR-Ls)cuclsiB068
CsaV3_1G038280MELO3C029285.2Melon (DHL92) v3.6.1cucmedB039
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G038280Cucumber (Chinese Long) v3cuccucB013
CsaV3_1G038280Cucumber (Gy14) v2cgybcucB001
CsaV3_1G038280Cucumber (Gy14) v2cgybcucB062
CsaV3_1G038280Cucumber (Gy14) v1cgycucB094
CsaV3_1G038280Cucumber (Gy14) v1cgycucB035
CsaV3_1G038280Cucurbita maxima (Rimu)cmacucB0069
CsaV3_1G038280Cucurbita maxima (Rimu)cmacucB0184
CsaV3_1G038280Cucurbita maxima (Rimu)cmacucB0922
CsaV3_1G038280Cucurbita moschata (Rifu)cmocucB0058
CsaV3_1G038280Cucurbita moschata (Rifu)cmocucB0097
CsaV3_1G038280Cucurbita moschata (Rifu)cmocucB0169
CsaV3_1G038280Cucurbita moschata (Rifu)cmocucB0914
CsaV3_1G038280Cucurbita pepo (Zucchini)cpecucB0100
CsaV3_1G038280Cucurbita pepo (Zucchini)cpecucB0432
CsaV3_1G038280Cucurbita pepo (Zucchini)cpecucB0807
CsaV3_1G038280Cucurbita pepo (Zucchini)cpecucB0998
CsaV3_1G038280Wild cucumber (PI 183967)cpicucB000
CsaV3_1G038280Wild cucumber (PI 183967)cpicucB078
CsaV3_1G038280Bottle gourd (USVL1VR-Ls)cuclsiB014
CsaV3_1G038280Melon (DHL92) v3.5.1cucmeB042
CsaV3_1G038280Melon (DHL92) v3.5.1cucmeB077
CsaV3_1G038280Melon (DHL92) v3.6.1cucmedB071
CsaV3_1G038280Watermelon (Charleston Gray)cucwcgB032
CsaV3_1G038280Watermelon (Charleston Gray)cucwcgB042
CsaV3_1G038280Watermelon (Charleston Gray)cucwcgB053
CsaV3_1G038280Watermelon (97103) v1cucwmB017
CsaV3_1G038280Watermelon (97103) v1cucwmB028
CsaV3_1G038280Watermelon (97103) v1cucwmB077
CsaV3_1G038280Watermelon (97103) v2cucwmbB044
CsaV3_1G038280Wax gourdcucwgoB109