CsaV3_1G038170 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G038170
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptionoligopeptide transporter 6-like
Locationchr1 : 23972388 .. 23972810 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGCAGTTGAGACCAACTAGTTGCCGGAATAAGTTGAGTTCACCCCCAAAAAAACTGCAAGGTTTGGAATTCTTGGCTAACATTGATGGTCATGGGGAGTGTGTTCAGGCTAGGACGACAAAAGAGTAAGACAAAGGGGTTGCAGAAGGGCCTTGAACTCCGCGCTTACCTCTTTCTTCAAGCTTTGTTGGTTTGATTCCATCTCTTTTACTTGAGCTCGGCTCTTTTGGTCAACAATTTCATCTTACATCAAAAGTTCCCCTTGCTAGCTCCCGGTTTGCCACTGCTGGCGCTTGTTCTTCTAATGTTCGTGCCATGACACCCCTTAGTTATCGTTTCAATGTGTATGGAGCCAAAAGGTTTCCCATATATTTAAGCATCCTTTTCGTGGTGAATGGCCACAAGTACAATCAATTTTAA

mRNA sequence

ATGTTGCAGTTGAGACCAACTAGTTGCCGGAATAAGTTGAGTTCACCCCCAAAAAAACTGCAAGGTTTGGAATTCTTGGCTAACATTGATGGTCATGGGGAGTGTGTTCAGGCTAGGACGACAAAAGACTTTGTTGGTTTGATTCCATCTCTTTTACTTGAGCTCGGCTCTTTTGGTCAACAATTTCATCTTACATCAAAAGTTCCCCTTGCTAGCTCCCGGTTTGCCACTGCTGGCGCTTGTTCTTCTAATGTTCGTGCCATGACACCCCTTAGTTATCGTTTCAATGTGTATGGAGCCAAAAGGTTTCCCATATATTTAAGCATCCTTTTCGTGGTGAATGGCCACAAGTACAATCAATTTTAA

Coding sequence (CDS)

ATGTTGCAGTTGAGACCAACTAGTTGCCGGAATAAGTTGAGTTCACCCCCAAAAAAACTGCAAGGTTTGGAATTCTTGGCTAACATTGATGGTCATGGGGAGTGTGTTCAGGCTAGGACGACAAAAGACTTTGTTGGTTTGATTCCATCTCTTTTACTTGAGCTCGGCTCTTTTGGTCAACAATTTCATCTTACATCAAAAGTTCCCCTTGCTAGCTCCCGGTTTGCCACTGCTGGCGCTTGTTCTTCTAATGTTCGTGCCATGACACCCCTTAGTTATCGTTTCAATGTGTATGGAGCCAAAAGGTTTCCCATATATTTAAGCATCCTTTTCGTGGTGAATGGCCACAAGTACAATCAATTTTAA

Protein sequence

MLQLRPTSCRNKLSSPPKKLQGLEFLANIDGHGECVQARTTKDFVGLIPSLLLELGSFGQQFHLTSKVPLASSRFATAGACSSNVRAMTPLSYRFNVYGAKRFPIYLSILFVVNGHKYNQF
Homology
[Close]
BLAST of CsaV3_1G038170 vs. NCBI nr
Match: KGN66000.1 (hypothetical protein Csa_1G560820 [Cucumis sativus])

HSP 1 Score: 247.3 bits (630), Expect = 2.7e-62
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0 

Query: 1   MLQLRPTSCRNKLSSPPKKLQGLEFLANIDGHGECVQARTTKDFVGLIPSLLLELGSFGQ 60
           MLQLRPTSCRNKLSSPPKKLQGLEFLANIDGHGECVQARTTKDFVGLIPSLLLELGSFGQ
Sbjct: 1   MLQLRPTSCRNKLSSPPKKLQGLEFLANIDGHGECVQARTTKDFVGLIPSLLLELGSFGQ 60

Query: 61  QFHLTSKVPLASSRFATAGACSSNVRAMTPLSYRFNVYGAKRFPIYLSILFVVNGHKYNQ 120
           QFHLTSKVPLASSRFATAGACSSNVRAMTPLSYRFNVYGAKRFPIYLSILFVVNGHKYNQ
Sbjct: 61  QFHLTSKVPLASSRFATAGACSSNVRAMTPLSYRFNVYGAKRFPIYLSILFVVNGHKYNQ 120

Query: 121 F 122
           F
Sbjct: 121 F 121

[Close]
BLAST of CsaV3_1G038170 vs. NCBI nr
Match: XP_004138881.2 (PREDICTED: oligopeptide transporter 6-like [Cucumis sativus] >KGN62864.1 hypothetical protein Csa_2G377985 [Cucumis sativus])

HSP 1 Score: 65.9 bits (159), Expect = 1.1e-07
Identity = 40/73 (54.79%), Postives = 44/73 (60.27%), Query Frame = 0 

Query: 53  LELGSFGQQFHLTSKV---PLASSRFATAGACSSNV---RAMTPLSYRFNVYGAKRFPIY 112
           L LG+FG  +   S     PLAS  FATA      V     MTPLSY  NVYGAKRFPIY
Sbjct: 262 LGLGAFGIDWSTISSYLGSPLASPWFATANVAVGFVIVMYVMTPLSYWLNVYGAKRFPIY 321

Query: 113 LSILFVVNGHKYN 120
            S LF+ NGH+YN
Sbjct: 322 SSSLFMANGHEYN 334

[Close]
BLAST of CsaV3_1G038170 vs. NCBI nr
Match: XP_008445079.1 (PREDICTED: oligopeptide transporter 6-like [Cucumis melo] >XP_008445080.1 PREDICTED: oligopeptide transporter 6-like [Cucumis melo])

HSP 1 Score: 65.9 bits (159), Expect = 1.1e-07
Identity = 40/73 (54.79%), Postives = 44/73 (60.27%), Query Frame = 0 

Query: 53  LELGSFGQQFHLTSKV---PLASSRFATAGACSSNV---RAMTPLSYRFNVYGAKRFPIY 112
           L LG+FG  +   S     PLAS  FATA      V     MTPLSY  NVYGAKRFPIY
Sbjct: 264 LGLGAFGIDWSTISSYLGSPLASPWFATANVAVGFVIVMYVMTPLSYWLNVYGAKRFPIY 323

Query: 113 LSILFVVNGHKYN 120
            S LF+ NGH+YN
Sbjct: 324 SSSLFMANGHEYN 336

[Close]
BLAST of CsaV3_1G038170 vs. NCBI nr
Match: XP_022945259.1 (oligopeptide transporter 6 [Cucurbita moschata])

HSP 1 Score: 59.7 bits (143), Expect = 8.0e-06
Identity = 37/73 (50.68%), Postives = 43/73 (58.90%), Query Frame = 0 

Query: 53  LELGSFGQQFHLTSKV---PLASSRFATAGACSSNV---RAMTPLSYRFNVYGAKRFPIY 112
           L LG+FG  +   S     PLAS  FATA      V     MTPL+Y  NVYGAK+FPIY
Sbjct: 260 LGLGAFGIDWTTISSYLGSPLASPWFATANIAVGFVVVMYVMTPLTYWLNVYGAKKFPIY 319

Query: 113 LSILFVVNGHKYN 120
            S LF+ NG +YN
Sbjct: 320 SSALFMSNGQRYN 332

[Close]
BLAST of CsaV3_1G038170 vs. NCBI nr
Match: XP_022968146.1 (oligopeptide transporter 6 [Cucurbita maxima])

HSP 1 Score: 59.7 bits (143), Expect = 8.0e-06
Identity = 37/73 (50.68%), Postives = 43/73 (58.90%), Query Frame = 0 

Query: 53  LELGSFGQQFHLTSKV---PLASSRFATAGACSSNV---RAMTPLSYRFNVYGAKRFPIY 112
           L LG+FG  +   S     PLAS  FATA      V     MTPL+Y  NVYGAK+FPIY
Sbjct: 260 LGLGAFGIDWTTISSYLGSPLASPWFATANIAVGFVLVMYVMTPLTYWLNVYGAKKFPIY 319

Query: 113 LSILFVVNGHKYN 120
            S LF+ NG +YN
Sbjct: 320 SSALFMSNGQRYN 332

[Close]
BLAST of CsaV3_1G038170 vs. TAIR10
Match: AT5G53520.1 (oligopeptide transporter 8)

HSP 1 Score: 45.1 bits (105), Expect = 3.7e-05
Identity = 29/72 (40.28%), Postives = 38/72 (52.78%), Query Frame = 0 

Query: 53  LELGSFGQQFHLTSKV---PLASSRFATAGACSSNVRAM---TPLSYRFNVYGAKRFPIY 112
           L +GSFG  +   +     PLAS  FA+A   +     M   TPL Y  ++Y AK FPIY
Sbjct: 257 LGIGSFGLDWSTIASYLGSPLASPFFASANIAAGFFLVMYVITPLCYYLDLYNAKTFPIY 316

Query: 113 LSILFVVNGHKY 119
              LFV +G +Y
Sbjct: 317 SGKLFVASGKEY 328

[Close]
BLAST of CsaV3_1G038170 vs. TAIR10
Match: AT4G27730.1 (oligopeptide transporter 1)

HSP 1 Score: 43.5 bits (101), Expect = 1.1e-04
Identity = 29/73 (39.73%), Postives = 38/73 (52.05%), Query Frame = 0 

Query: 53  LELGSFGQQFHLTSKV---PLASSRFATAGACSSNVRAM---TPLSYRFNVYGAKRFPIY 112
           L +GS G  +   S     PLAS  FA+       V  M   TP+ Y  N+Y AK FPI+
Sbjct: 258 LGIGSIGFDWVTISAYLGSPLASPLFASVNVAIGFVLVMYIVTPVCYWLNIYDAKTFPIF 317

Query: 113 LSILFVVNGHKYN 120
            S LF+ NG +Y+
Sbjct: 318 SSQLFMGNGSRYD 330

[Close]
BLAST of CsaV3_1G038170 vs. TAIR10
Match: AT4G10770.1 (oligopeptide transporter 7)

HSP 1 Score: 40.8 bits (94), Expect = 7.0e-04
Identity = 29/73 (39.73%), Postives = 36/73 (49.32%), Query Frame = 0 

Query: 53  LELGSFGQQFHLTSKV---PLASSRFATAGACSSNV---RAMTPLSYRFNVYGAKRFPIY 112
           L +G+ G  +   S     PLAS  FATA      V     + P+ Y  +VY AK FPI+
Sbjct: 294 LGVGAIGLDWSTISSYLGSPLASPWFATANVGVGFVLVIYVLVPICYWLDVYKAKTFPIF 353

Query: 113 LSILFVVNGHKYN 120
            S LF   G KYN
Sbjct: 354 SSSLFSSQGSKYN 366

[Close]
BLAST of CsaV3_1G038170 vs. TAIR10
Match: AT5G53510.1 (oligopeptide transporter 9)

HSP 1 Score: 40.4 bits (93), Expect = 9.1e-04
Identity = 24/54 (44.44%), Postives = 30/54 (55.56%), Query Frame = 0 

Query: 69  PLASSRFATAGACSSNVRAM---TPLSYRFNVYGAKRFPIYLSILFVVNGHKYN 120
           PLAS  FAT       V  M   TP+ Y  N+Y AK +PI+ S LF+ NG  Y+
Sbjct: 282 PLASPLFATINVTIGFVVIMYVATPICYWLNIYKAKTYPIFSSGLFMGNGSSYD 335

[Close]
BLAST of CsaV3_1G038170 vs. Swiss-Prot
Match: sp|Q9FJD1|OPT8_ARATH (Oligopeptide transporter 8 OS=Arabidopsis thaliana OX=3702 GN=OPT8 PE=2 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 6.7e-04
Identity = 29/72 (40.28%), Postives = 38/72 (52.78%), Query Frame = 0 

Query: 53  LELGSFGQQFHLTSKV---PLASSRFATAGACSSNVRAM---TPLSYRFNVYGAKRFPIY 112
           L +GSFG  +   +     PLAS  FA+A   +     M   TPL Y  ++Y AK FPIY
Sbjct: 257 LGIGSFGLDWSTIASYLGSPLASPFFASANIAAGFFLVMYVITPLCYYLDLYNAKTFPIY 316

Query: 113 LSILFVVNGHKY 119
              LFV +G +Y
Sbjct: 317 SGKLFVASGKEY 328

[Close]
BLAST of CsaV3_1G038170 vs. TrEMBL
Match: tr|A0A0A0LVW4|A0A0A0LVW4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G560820 PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 1.8e-62
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0 

Query: 1   MLQLRPTSCRNKLSSPPKKLQGLEFLANIDGHGECVQARTTKDFVGLIPSLLLELGSFGQ 60
           MLQLRPTSCRNKLSSPPKKLQGLEFLANIDGHGECVQARTTKDFVGLIPSLLLELGSFGQ
Sbjct: 1   MLQLRPTSCRNKLSSPPKKLQGLEFLANIDGHGECVQARTTKDFVGLIPSLLLELGSFGQ 60

Query: 61  QFHLTSKVPLASSRFATAGACSSNVRAMTPLSYRFNVYGAKRFPIYLSILFVVNGHKYNQ 120
           QFHLTSKVPLASSRFATAGACSSNVRAMTPLSYRFNVYGAKRFPIYLSILFVVNGHKYNQ
Sbjct: 61  QFHLTSKVPLASSRFATAGACSSNVRAMTPLSYRFNVYGAKRFPIYLSILFVVNGHKYNQ 120

Query: 121 F 122
           F
Sbjct: 121 F 121

[Close]
BLAST of CsaV3_1G038170 vs. TrEMBL
Match: tr|A0A1S3BBT9|A0A1S3BBT9_CUCME (oligopeptide transporter 6-like OS=Cucumis melo OX=3656 GN=LOC103488225 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 7.4e-08
Identity = 40/73 (54.79%), Postives = 44/73 (60.27%), Query Frame = 0 

Query: 53  LELGSFGQQFHLTSKV---PLASSRFATAGACSSNV---RAMTPLSYRFNVYGAKRFPIY 112
           L LG+FG  +   S     PLAS  FATA      V     MTPLSY  NVYGAKRFPIY
Sbjct: 264 LGLGAFGIDWSTISSYLGSPLASPWFATANVAVGFVIVMYVMTPLSYWLNVYGAKRFPIY 323

Query: 113 LSILFVVNGHKYN 120
            S LF+ NGH+YN
Sbjct: 324 SSSLFMANGHEYN 336

[Close]
BLAST of CsaV3_1G038170 vs. TrEMBL
Match: tr|A0A0A0LPB3|A0A0A0LPB3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G377985 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 7.4e-08
Identity = 40/73 (54.79%), Postives = 44/73 (60.27%), Query Frame = 0 

Query: 53  LELGSFGQQFHLTSKV---PLASSRFATAGACSSNV---RAMTPLSYRFNVYGAKRFPIY 112
           L LG+FG  +   S     PLAS  FATA      V     MTPLSY  NVYGAKRFPIY
Sbjct: 262 LGLGAFGIDWSTISSYLGSPLASPWFATANVAVGFVIVMYVMTPLSYWLNVYGAKRFPIY 321

Query: 113 LSILFVVNGHKYN 120
            S LF+ NGH+YN
Sbjct: 322 SSSLFMANGHEYN 334

[Close]
BLAST of CsaV3_1G038170 vs. TrEMBL
Match: tr|A0A1J6KC88|A0A1J6KC88_NICAT (Oligopeptide transporter 7 OS=Nicotiana attenuata OX=49451 GN=OPT7_2 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 9.1e-06
Identity = 36/73 (49.32%), Postives = 43/73 (58.90%), Query Frame = 0 

Query: 53  LELGSFGQQFHLTSKV---PLASSRFATAGACSSNVRA---MTPLSYRFNVYGAKRFPIY 112
           L +G+FG  +   S     PLAS  FATA   +  V     MTPL+Y FNVY AK FPI+
Sbjct: 258 LGIGAFGFDWTTISSYLGSPLASPWFATANVAAGFVLVMYLMTPLTYWFNVYNAKNFPIF 317

Query: 113 LSILFVVNGHKYN 120
            S LF +NG KYN
Sbjct: 318 SSSLFTLNGTKYN 330

[Close]
BLAST of CsaV3_1G038170 vs. TrEMBL
Match: tr|A0A1S3BBD0|A0A1S3BBD0_CUCME (oligopeptide transporter 6-like OS=Cucumis melo OX=3656 GN=LOC103488224 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.2e-05
Identity = 36/73 (49.32%), Postives = 41/73 (56.16%), Query Frame = 0 

Query: 53  LELGSFGQQFHLTSKV---PLASSRFATAGACSSNV---RAMTPLSYRFNVYGAKRFPIY 112
           L +G+FG  +   S     PLAS  FAT       V     MTPL Y  NVY AK+FPIY
Sbjct: 261 LGIGAFGIDWSTISSYLGSPLASPWFATVNIAVGFVLVMYVMTPLCYWLNVYEAKKFPIY 320

Query: 113 LSILFVVNGHKYN 120
            S LF+ NGHKYN
Sbjct: 321 SSSLFMANGHKYN 333

The following BLAST results are available for this feature:
BLAST of CsaV3_1G038170 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN66000.12.7e-62100.00hypothetical protein Csa_1G560820 [Cucumis sativus][more]
XP_004138881.21.1e-0754.79PREDICTED: oligopeptide transporter 6-like [Cucumis sativus] >KGN62864.1 hypothe... [more]
XP_008445079.11.1e-0754.79PREDICTED: oligopeptide transporter 6-like [Cucumis melo] >XP_008445080.1 PREDIC... [more]
XP_022945259.18.0e-0650.68oligopeptide transporter 6 [Cucurbita moschata][more]
XP_022968146.18.0e-0650.68oligopeptide transporter 6 [Cucurbita maxima][more]
BLAST of CsaV3_1G038170 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G53520.13.7e-0540.28oligopeptide transporter 8[more]
AT4G27730.11.1e-0439.73oligopeptide transporter 1[more]
AT4G10770.17.0e-0439.73oligopeptide transporter 7[more]
AT5G53510.19.1e-0444.44oligopeptide transporter 9[more]
BLAST of CsaV3_1G038170 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9FJD1|OPT8_ARATH6.7e-0440.28Oligopeptide transporter 8 OS=Arabidopsis thaliana OX=3702 GN=OPT8 PE=2 SV=1[more]
BLAST of CsaV3_1G038170 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LVW4|A0A0A0LVW4_CUCSA1.8e-62100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G560820 PE=4 SV=1[more]
tr|A0A1S3BBT9|A0A1S3BBT9_CUCME7.4e-0854.79oligopeptide transporter 6-like OS=Cucumis melo OX=3656 GN=LOC103488225 PE=4 SV=... [more]
tr|A0A0A0LPB3|A0A0A0LPB3_CUCSA7.4e-0854.79Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G377985 PE=4 SV=1[more]
tr|A0A1J6KC88|A0A1J6KC88_NICAT9.1e-0649.32Oligopeptide transporter 7 OS=Nicotiana attenuata OX=49451 GN=OPT7_2 PE=4 SV=1[more]
tr|A0A1S3BBD0|A0A1S3BBD0_CUCME1.2e-0549.32oligopeptide transporter 6-like OS=Cucumis melo OX=3656 GN=LOC103488224 PE=4 SV=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G038170.1CsaV3_1G038170.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G038170Cucumber (Gy14) v2cgybcucB001
CsaV3_1G038170Cucurbita maxima (Rimu)cmacucB0120
CsaV3_1G038170Cucumber (Gy14) v1cgycucB035
CsaV3_1G038170Cucurbita maxima (Rimu)cmacucB0062
CsaV3_1G038170Cucurbita moschata (Rifu)cmocucB0048
CsaV3_1G038170Cucurbita moschata (Rifu)cmocucB0097
CsaV3_1G038170Cucurbita moschata (Rifu)cmocucB0109
CsaV3_1G038170Cucurbita moschata (Rifu)cmocucB0914
CsaV3_1G038170Cucurbita pepo (Zucchini)cpecucB0432
CsaV3_1G038170Cucurbita pepo (Zucchini)cpecucB0807
CsaV3_1G038170Cucurbita pepo (Zucchini)cpecucB0821
CsaV3_1G038170Wild cucumber (PI 183967)cpicucB000
CsaV3_1G038170Bottle gourd (USVL1VR-Ls)cuclsiB068
CsaV3_1G038170Bottle gourd (USVL1VR-Ls)cuclsiB079
CsaV3_1G038170Melon (DHL92) v3.5.1cucmeB042
CsaV3_1G038170Melon (DHL92) v3.5.1cucmeB059
CsaV3_1G038170Melon (DHL92) v3.6.1cucmedB039
CsaV3_1G038170Melon (DHL92) v3.6.1cucmedB056
CsaV3_1G038170Watermelon (Charleston Gray)cucwcgB043
CsaV3_1G038170Watermelon (Charleston Gray)cucwcgB053
CsaV3_1G038170Watermelon (97103) v1cucwmB018
CsaV3_1G038170Watermelon (97103) v1cucwmB028
CsaV3_1G038170Watermelon (97103) v2cucwmbB035
CsaV3_1G038170Watermelon (97103) v2cucwmbB044
CsaV3_1G038170Wax gourdcucwgoB092
CsaV3_1G038170Wax gourdcucwgoB109