CsaV3_1G037940 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G037940
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionPentatricopeptide repeat-containing protein, putative
Locationchr1 : 23806037 .. 23808942 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTACTGGTAACAATCTTATAGTTGTTTCAGCAATCTATTTACATTTATGAAGTACCATACTCGATTTCTCGGGCACACTACATCAGTTATACAGTTGCATCGGATTATTAATATTAGTTTACATAATAGGCATTGAGTTATTAATATCATCGAGTTATTAATATTGTATGGTCCTTAAGCTTTTACGTCGTGTCTACTCAGGCCTTTTATTTTTAAGCATTAGTGTAATGGGTTTCTAAACTTTTATAGTTGTGTTTGTTTAGTCTATATAGTTTTAAAAGTTCTTAGGAGCTCTTAACCTTTCATGCTTATATCTATTTAATCTTAGCACTTTAAAATGTTTCTAATATTTTCTTACACTTATATGGCATGCTAACTGTGTATTAGTTAAGAATCATAGGTGGGTTGATTTCAAACACAATCCTAAAATAATATTGTTACCACGCCACATGTGTGTTAAATTAGTTTTGTGATGAGAACTTATCAAACACAAAATTGAAAGCTTAGGTAACTATTAGATGCGTATGAGGTATAGGAGCCAAATATAAGACAACCCAGAAAGTTCAGGACCAAAATTCCAACTTAACGTTAACATTATCACAATCTGTTTATCTTTATGTAACAATGCATGCTTTGGCCTACAGGAAGATGTTGGACCAAACTCATTTAGCTTTTCCATTGCGGCTAGAGCTTGTGCTTCAATCAGCTCGTATTCATGTGGAAAGCAAATACATGCAGCAGTTACCAAATATGGTCTCCACTGTGATGCTCCAGTAATGAATTCAATACTCGACATGTATTGCAGGTGCAACTATTTATGTGATGCCAAAAGATGCTTTGGTGAATTGACCGAAAAGAACTTAATTACATGGAACACCTTGATAGCGGGATATGAAAGGTCAGATTCCAGTGAGTCTCTAAGTTTATTTTTCCAAATGGGGTCTGAAGGCTATAAGCCGAATTGCTTTACATTCACAAGTATTACAGCTGCTTGTGCCAATTTAGCAGTCTTAAGCTGTGGACAACAAGTTCATGGTGGAATTGTTCGTAGAGGATTTGACAAAAATGTGGCATTGATCAATTCACTTATTGACATGTACGCAAAGTGTGGAAGCATAAGCGATTCACACAAACTCTTCTGTGATATGCCTGGAAGAGATTTGGTGTCCTGGACTACTATGATGATTGGCTATGGAGCACATGGATATGGGAAAGAGGCCGTGAAGTTGTTCGATGAAATGGTTCAAAGTGGAATTCAACCTGATCGGATAGTGTTCATGGGAGTCCTATGTGGTTGCAGCCATGCTGGACTTGTGGACAAAGGACTAAAATATTTTAGATCTATGCTGGAGGACTACAATATAAACCCAGATCAAGAAATCTACAGGTGTGTGGTGGACTTGCTTGGTCGTGCTGGAAGAGTTGAGGAGGCTTTTCAACTTGTCGAGAATATGCCATTTGAACCTGATGAGTCTGTATGGGGTGCTCTCCTTGGAGCTTGTAAAGCGTATAAACTTTCCAATCTAGGGAATTTGGCAGCTCAAAGAGTATTGGATAGAAGGCCGAACATGGCGGGGACCTATCTGCTGTTGTCCAAAATATATGCAGCTGAAGGTAAATGGGGCGAGTTTGCCAAAATGAGGAAGCTGATGAAAGGGATGAACAAAAAGAAAGAAGTGGGTAAGAGTTGGATTGAAATCAGAAATGAAGTTTATAGTTTTGTGGTTGGAGCTAAGATGGGCCCTCACATAGAGTGGGTGCACAAAGTAATCGATGTACTTATTTGGCATATGAAAGATGATGGGGATGTGACAGATTTGGATTACATAGTAGATTATCTAGAAGGGACTTAATCTAGAACATGATAACCCGGAAGACCTCATGAAACAATATGAAGTTTGGAATATCATATGCTTCCTTTTCCAAAAACATCGTTTCAACACAATTGAAACAAGAAGATGAAAATGATATTTGCAAAGGAGGTAAGGGTCCTTCTCTGCTATGTTCTTAATAGAATTTGCTGTTCAGAACTTCATATTTTCTCAGTTTGTAAAATACTTCCCATATAGGCCTTTTGTTTCCTCTTCATATTGTAAACCGTTGTTTTTCTTGTGTTAGAATTAGTGGGCTTGACCAAGGAAGAATTTACCCTAATTTTCTTTTCTTTTCTTTTCTTTTCATAAGTATGTTGTCTATTTATTTTTTCGCTTGTATCTTTTGTTAAAATGAGAAATTAATAAGAAAGCCAAATCGTGGTTTTTCTCCTAGTACTCGGGTTTCCACGTAACTCATTGTCTATTTTTTTTACTACTTTTAATAGTTTTCACTTGATGTTTTATATTGAGTGTAAATTATCATTTGAATCATGTTGATTTTGTTAACTAATTTCACAACAATAGGATGTGAGATTTACTTTTTAACGAATTATCATTTTGTAGAAAATTATTCGTTTAAGAAGTCACAACAAATTTAAACTTTTGATTTCATGCATTTTCGTGCTTTATAGTGCTTGGGTCTGTTATTCTTGGTTGAACTTACTTAACATTGTGATGATTTTCTTGACTTCCTCTATACCGTCGATTTAATGGATAAATCAACACATGCTTGGCGTCGGTGATCTTTATTGACTTGTGTAACCAGTTTGAGAAGCAACCAAGAGTTGGTATGGGTTACAAAACTTAAAGTTATAAGGCTATATGACTCTTAGGGAGTGTTTAACCCAAGCACTATAAAGCACGAAGATGCATTGACTCCTTGATTCAAACACTCCATAGGAGGGTATTGTTCCACCTGTTAGTGTGATGCTCCTTGTGGTAGTATTCATGTTTTTGTGGCTCTCCTGTAGTTATGGTAACCAATTTAAGGTTGTTGTGAATTATTTCTTGGTCTTGAAGGGTGCTTAG

mRNA sequence

ATGTTACTGGAAGATGTTGGACCAAACTCATTTAGCTTTTCCATTGCGGCTAGAGCTTGTGCTTCAATCAGCTCGTATTCATGTGGAAAGCAAATACATGCAGCAGTTACCAAATATGGTCTCCACTGTGATGCTCCAGTAATGAATTCAATACTCGACATGTATTGCAGGTGCAACTATTTATGTGATGCCAAAAGATGCTTTGGTGAATTGACCGAAAAGAACTTAATTACATGGAACACCTTGATAGCGGGATATGAAAGTTATGGTAACCAATTTAAGGTTGTTGTGAATTATTTCTTGGTCTTGAAGGGTGCTTAG

Coding sequence (CDS)

ATGTTACTGGAAGATGTTGGACCAAACTCATTTAGCTTTTCCATTGCGGCTAGAGCTTGTGCTTCAATCAGCTCGTATTCATGTGGAAAGCAAATACATGCAGCAGTTACCAAATATGGTCTCCACTGTGATGCTCCAGTAATGAATTCAATACTCGACATGTATTGCAGGTGCAACTATTTATGTGATGCCAAAAGATGCTTTGGTGAATTGACCGAAAAGAACTTAATTACATGGAACACCTTGATAGCGGGATATGAAAGTTATGGTAACCAATTTAAGGTTGTTGTGAATTATTTCTTGGTCTTGAAGGGTGCTTAG

Protein sequence

MLLEDVGPNSFSFSIAARACASISSYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNYLCDAKRCFGELTEKNLITWNTLIAGYESYGNQFKVVVNYFLVLKGA
Homology
[Close]
BLAST of CsaV3_1G037940 vs. NCBI nr
Match: XP_011659402.1 (PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Cucumis sativus] >KGN65978.1 hypothetical protein Csa_1G555630 [Cucumis sativus])

HSP 1 Score: 186.4 bits (472), Expect = 5.0e-44
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1   MLLEDVGPNSFSFSIAARACASISSYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNY 60
           MLLEDVGPNSFSFSIAARACASISSYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNY
Sbjct: 202 MLLEDVGPNSFSFSIAARACASISSYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNY 261

Query: 61  LCDAKRCFGELTEKNLITWNTLIAGYE 88
           LCDAKRCFGELTEKNLITWNTLIAGYE
Sbjct: 262 LCDAKRCFGELTEKNLITWNTLIAGYE 288

[Close]
BLAST of CsaV3_1G037940 vs. NCBI nr
Match: XP_008450527.1 (PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Cucumis melo] >XP_008450530.1 PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Cucumis melo] >XP_008450531.1 PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Cucumis melo] >XP_008450532.1 PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Cucumis melo])

HSP 1 Score: 183.7 bits (465), Expect = 3.2e-43
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 0 

Query: 1   MLLEDVGPNSFSFSIAARACASISSYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNY 60
           MLLEDVGPNSFSFSIAARACASISSYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNY
Sbjct: 202 MLLEDVGPNSFSFSIAARACASISSYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNY 261

Query: 61  LCDAKRCFGELTEKNLITWNTLIAGYE 88
           LCDAKRCF ELTEKNLITWNTLIAGYE
Sbjct: 262 LCDAKRCFDELTEKNLITWNTLIAGYE 288

[Close]
BLAST of CsaV3_1G037940 vs. NCBI nr
Match: XP_022989366.1 (putative pentatricopeptide repeat-containing protein At1g56570 [Cucurbita maxima])

HSP 1 Score: 161.0 bits (406), Expect = 2.2e-36
Identity = 74/87 (85.06%), Postives = 80/87 (91.95%), Query Frame = 0 

Query: 1   MLLEDVGPNSFSFSIAARACASISSYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNY 60
           MLL++V PNSFSFSIA RACASI SY+ GKQIHAAVTKYGLH D PV+NSILDMYCRCNY
Sbjct: 203 MLLDNVEPNSFSFSIAVRACASIGSYAYGKQIHAAVTKYGLHSDIPVLNSILDMYCRCNY 262

Query: 61  LCDAKRCFGELTEKNLITWNTLIAGYE 88
           LCDAKRCFGE+T +NLITWNTLIAGYE
Sbjct: 263 LCDAKRCFGEMTRRNLITWNTLIAGYE 289

[Close]
BLAST of CsaV3_1G037940 vs. NCBI nr
Match: XP_022157012.1 (putative pentatricopeptide repeat-containing protein At1g56570 [Momordica charantia])

HSP 1 Score: 160.2 bits (404), Expect = 3.8e-36
Identity = 77/87 (88.51%), Postives = 78/87 (89.66%), Query Frame = 0 

Query: 1   MLLEDVGPNSFSFSIAARACASISSYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNY 60
           MLLEDV PNSFSFSIA RACASI S S GKQIHAAVTKYGLH D PVMNSILDMYCRCN 
Sbjct: 259 MLLEDVEPNSFSFSIAVRACASIGSSSYGKQIHAAVTKYGLHSDVPVMNSILDMYCRCNC 318

Query: 61  LCDAKRCFGELTEKNLITWNTLIAGYE 88
           LCDAKRCFGE+T KNLITWNTLIAGYE
Sbjct: 319 LCDAKRCFGEMTVKNLITWNTLIAGYE 345

[Close]
BLAST of CsaV3_1G037940 vs. NCBI nr
Match: XP_022931578.1 (putative pentatricopeptide repeat-containing protein At1g56570 [Cucurbita moschata])

HSP 1 Score: 159.5 bits (402), Expect = 6.5e-36
Identity = 74/87 (85.06%), Postives = 80/87 (91.95%), Query Frame = 0 

Query: 1   MLLEDVGPNSFSFSIAARACASISSYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNY 60
           MLL++V PNSFSFSIA RACASI SY+ GKQIHAAVTKYGLH D PV+NSILDMYCRCN 
Sbjct: 203 MLLDNVEPNSFSFSIAVRACASIGSYAYGKQIHAAVTKYGLHSDIPVLNSILDMYCRCNC 262

Query: 61  LCDAKRCFGELTEKNLITWNTLIAGYE 88
           LCDAKRCFGE+TE+NLITWNTLIAGYE
Sbjct: 263 LCDAKRCFGEMTERNLITWNTLIAGYE 289

[Close]
BLAST of CsaV3_1G037940 vs. TAIR10
Match: AT1G56570.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 99.8 bits (247), Expect = 1.1e-21
Identity = 49/87 (56.32%), Postives = 61/87 (70.11%), Query Frame = 0 

Query: 1   MLLEDVGPNSFSFSIAARACASISSYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNY 60
           MLLE+     +  +IA RA ASI S + GKQIHA+V K G   + PVMNSILD+YCRC Y
Sbjct: 204 MLLENAEVTPYCITIAVRASASIDSVTTGKQIHASVIKRGFQSNLPVMNSILDLYCRCGY 263

Query: 61  LCDAKRCFGELTEKNLITWNTLIAGYE 88
           L +AK  F E+ +K+LITWNTLI+  E
Sbjct: 264 LSEAKHYFHEMEDKDLITWNTLISELE 290

[Close]
BLAST of CsaV3_1G037940 vs. TAIR10
Match: AT3G50420.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 79.0 bits (193), Expect = 2.0e-15
Identity = 37/104 (35.58%), Postives = 59/104 (56.73%), Query Frame = 0 

Query: 1   MLLEDVGPNSFSFSIAARACASISSYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNY 60
           ML+  V P  F++SI    C+ + SYS GK IHA +       D P+ N++LDMYC C  
Sbjct: 291 MLMSGVDPTQFTYSIVLNGCSKLGSYSLGKLIHARIIVSDSLADLPLDNALLDMYCSCGD 350

Query: 61  LCDAKRCFGELTEKNLITWNTLIAGYESYGNQFKVVVNYFLVLK 105
           + +A   FG +   NL++WN++I+G    G   + ++ Y  +L+
Sbjct: 351 MREAFYVFGRIHNPNLVSWNSIISGCSENGFGEQAMLMYRRLLR 394

[Close]
BLAST of CsaV3_1G037940 vs. TAIR10
Match: AT4G16835.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 78.6 bits (192), Expect = 2.7e-15
Identity = 36/96 (37.50%), Postives = 56/96 (58.33%), Query Frame = 0 

Query: 1   MLLEDVGPNSFSFSIAARACASISSYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNY 60
           ML E + PNS   S A   C+ +S+   G+QIH  V+K  L  D   + S++ MYC+C  
Sbjct: 275 MLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGE 334

Query: 61  LCDAKRCFGELTEKNLITWNTLIAGYESYGNQFKVV 97
           L DA + F  + +K+++ WN +I+GY  +GN  K +
Sbjct: 335 LGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKAL 370

[Close]
BLAST of CsaV3_1G037940 vs. TAIR10
Match: AT3G53360.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 75.5 bits (184), Expect = 2.2e-14
Identity = 37/96 (38.54%), Postives = 56/96 (58.33%), Query Frame = 0 

Query: 1   MLLEDVGPNSFSFSIAARACASISSYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNY 60
           ML ED+ P+ F+F    +ACAS S    GKQ+HA V K          N+++ MY R N 
Sbjct: 159 MLQEDLVPDQFAFGSIIKACASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQ 218

Query: 61  LCDAKRCFGELTEKNLITWNTLIAGYESYGNQFKVV 97
           + DA R F  +  K+LI+W+++IAG+   G +F+ +
Sbjct: 219 MSDASRVFYGIPMKDLISWSSIIAGFSQLGFEFEAL 254

[Close]
BLAST of CsaV3_1G037940 vs. TAIR10
Match: AT4G39530.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 73.2 bits (178), Expect = 1.1e-13
Identity = 34/87 (39.08%), Postives = 53/87 (60.92%), Query Frame = 0 

Query: 2   LLED-VGPNSFSFSIAARACASISSYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNY 61
           L+ED V P+ +  S    AC+ +     GKQIHA + +YGL  DA +MN ++D Y +C  
Sbjct: 240 LMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGR 299

Query: 62  LCDAKRCFGELTEKNLITWNTLIAGYE 88
           +  A + F  +  KN+I+W TL++GY+
Sbjct: 300 VIAAHKLFNGMPNKNIISWTTLLSGYK 326

[Close]
BLAST of CsaV3_1G037940 vs. Swiss-Prot
Match: sp|Q9FXA9|PPR83_ARATH (Putative pentatricopeptide repeat-containing protein At1g56570 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E64 PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.0e-20
Identity = 49/87 (56.32%), Postives = 61/87 (70.11%), Query Frame = 0 

Query: 1   MLLEDVGPNSFSFSIAARACASISSYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNY 60
           MLLE+     +  +IA RA ASI S + GKQIHA+V K G   + PVMNSILD+YCRC Y
Sbjct: 204 MLLENAEVTPYCITIAVRASASIDSVTTGKQIHASVIKRGFQSNLPVMNSILDLYCRCGY 263

Query: 61  LCDAKRCFGELTEKNLITWNTLIAGYE 88
           L +AK  F E+ +K+LITWNTLI+  E
Sbjct: 264 LSEAKHYFHEMEDKDLITWNTLISELE 290

[Close]
BLAST of CsaV3_1G037940 vs. Swiss-Prot
Match: sp|Q9SCT2|PP277_ARATH (Pentatricopeptide repeat-containing protein At3g50420 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E85 PE=2 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.7e-14
Identity = 37/104 (35.58%), Postives = 59/104 (56.73%), Query Frame = 0 

Query: 1   MLLEDVGPNSFSFSIAARACASISSYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNY 60
           ML+  V P  F++SI    C+ + SYS GK IHA +       D P+ N++LDMYC C  
Sbjct: 291 MLMSGVDPTQFTYSIVLNGCSKLGSYSLGKLIHARIIVSDSLADLPLDNALLDMYCSCGD 350

Query: 61  LCDAKRCFGELTEKNLITWNTLIAGYESYGNQFKVVVNYFLVLK 105
           + +A   FG +   NL++WN++I+G    G   + ++ Y  +L+
Sbjct: 351 MREAFYVFGRIHNPNLVSWNSIISGCSENGFGEQAMLMYRRLLR 394

[Close]
BLAST of CsaV3_1G037940 vs. Swiss-Prot
Match: sp|Q9M4P3|PP316_ARATH (Pentatricopeptide repeat-containing protein At4g16835, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=DYW10 PE=2 SV=3)

HSP 1 Score: 78.6 bits (192), Expect = 4.8e-14
Identity = 36/96 (37.50%), Postives = 56/96 (58.33%), Query Frame = 0 

Query: 1   MLLEDVGPNSFSFSIAARACASISSYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNY 60
           ML E + PNS   S A   C+ +S+   G+QIH  V+K  L  D   + S++ MYC+C  
Sbjct: 275 MLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGE 334

Query: 61  LCDAKRCFGELTEKNLITWNTLIAGYESYGNQFKVV 97
           L DA + F  + +K+++ WN +I+GY  +GN  K +
Sbjct: 335 LGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKAL 370

[Close]
BLAST of CsaV3_1G037940 vs. Swiss-Prot
Match: sp|Q9LFI1|PP280_ARATH (Pentatricopeptide repeat-containing protein At3g53360, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E86 PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.1e-13
Identity = 37/96 (38.54%), Postives = 56/96 (58.33%), Query Frame = 0 

Query: 1   MLLEDVGPNSFSFSIAARACASISSYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNY 60
           ML ED+ P+ F+F    +ACAS S    GKQ+HA V K          N+++ MY R N 
Sbjct: 159 MLQEDLVPDQFAFGSIIKACASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQ 218

Query: 61  LCDAKRCFGELTEKNLITWNTLIAGYESYGNQFKVV 97
           + DA R F  +  K+LI+W+++IAG+   G +F+ +
Sbjct: 219 MSDASRVFYGIPMKDLISWSSIIAGFSQLGFEFEAL 254

[Close]
BLAST of CsaV3_1G037940 vs. Swiss-Prot
Match: sp|Q9SVP7|PP307_ARATH (Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H42 PE=2 SV=2)

HSP 1 Score: 73.2 bits (178), Expect = 2.0e-12
Identity = 30/87 (34.48%), Postives = 53/87 (60.92%), Query Frame = 0 

Query: 4   EDVGPNSFSFSIAARACASISSYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNYLCD 63
           E +  N+F+F  A +A +  ++   GKQ+HA +TK G   +  V N+++ MY +C  + D
Sbjct: 686 EGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISD 745

Query: 64  AKRCFGELTEKNLITWNTLIAGYESYG 91
           A++ F E++ KN ++WN +I  Y  +G
Sbjct: 746 AEKQFLEVSTKNEVSWNAIINAYSKHG 772

[Close]
BLAST of CsaV3_1G037940 vs. TrEMBL
Match: tr|A0A0A0LW37|A0A0A0LW37_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G555630 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 3.3e-44
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1   MLLEDVGPNSFSFSIAARACASISSYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNY 60
           MLLEDVGPNSFSFSIAARACASISSYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNY
Sbjct: 202 MLLEDVGPNSFSFSIAARACASISSYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNY 261

Query: 61  LCDAKRCFGELTEKNLITWNTLIAGYE 88
           LCDAKRCFGELTEKNLITWNTLIAGYE
Sbjct: 262 LCDAKRCFGELTEKNLITWNTLIAGYE 288

[Close]
BLAST of CsaV3_1G037940 vs. TrEMBL
Match: tr|A0A1S3BQ30|A0A1S3BQ30_CUCME (putative pentatricopeptide repeat-containing protein At1g56570 OS=Cucumis melo OX=3656 GN=LOC103492105 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 2.1e-43
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 0 

Query: 1   MLLEDVGPNSFSFSIAARACASISSYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNY 60
           MLLEDVGPNSFSFSIAARACASISSYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNY
Sbjct: 202 MLLEDVGPNSFSFSIAARACASISSYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNY 261

Query: 61  LCDAKRCFGELTEKNLITWNTLIAGYE 88
           LCDAKRCF ELTEKNLITWNTLIAGYE
Sbjct: 262 LCDAKRCFDELTEKNLITWNTLIAGYE 288

[Close]
BLAST of CsaV3_1G037940 vs. TrEMBL
Match: tr|M0ZSH9|M0ZSH9_SOLTU (Uncharacterized protein OS=Solanum tuberosum OX=4113 GN=102588331 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.5e-25
Identity = 59/87 (67.82%), Postives = 71/87 (81.61%), Query Frame = 0 

Query: 1   MLLEDVGPNSFSFSIAARACASISSYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNY 60
           ML E+   N FSFSIA RACAS+ S + GKQ+HAA+TK+GL  + PVMNSILDMYCRCN 
Sbjct: 200 MLSEEGESNPFSFSIAVRACASVHSCTYGKQLHAAITKHGLDFNLPVMNSILDMYCRCNS 259

Query: 61  LCDAKRCFGELTEKNLITWNTLIAGYE 88
           L DAK+CF E+T+++ ITWNTLIAGYE
Sbjct: 260 LNDAKQCFHEMTQRDSITWNTLIAGYE 286

[Close]
BLAST of CsaV3_1G037940 vs. TrEMBL
Match: tr|K4B1B1|K4B1B1_SOLLC (Uncharacterized protein OS=Solanum lycopersicum OX=4081 GN=101248822 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.5e-25
Identity = 59/87 (67.82%), Postives = 70/87 (80.46%), Query Frame = 0 

Query: 1   MLLEDVGPNSFSFSIAARACASISSYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNY 60
           ML E    N FSFSIA RACAS+ S + GKQ+HAA+ K+GL  + PVMNSILDMYCRCN 
Sbjct: 203 MLSEGGESNPFSFSIAVRACASVHSCTYGKQLHAAIAKHGLDFNLPVMNSILDMYCRCNS 262

Query: 61  LCDAKRCFGELTEKNLITWNTLIAGYE 88
           L DAK+CF E+T+++LITWNTLIAGYE
Sbjct: 263 LNDAKQCFNEMTQRDLITWNTLIAGYE 289

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BLAST of CsaV3_1G037940 vs. TrEMBL
Match: tr|A0A2P2QM51|A0A2P2QM51_RHIMU (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 2.0e-25
Identity = 59/87 (67.82%), Postives = 68/87 (78.16%), Query Frame = 0 

Query: 1  MLLEDVGPNSFSFSIAARACASISSYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNY 60
          MLLE    + +SFSIA RACASISS + GKQ+HAA+ K G   + PVMNS+LDMYCRCN 
Sbjct: 1  MLLEGAESDPYSFSIAIRACASISSLNYGKQLHAAMVKLGFESNLPVMNSLLDMYCRCNC 60

Query: 61 LCDAKRCFGELTEKNLITWNTLIAGYE 88
          L DA +CF E+ EKNLITWNTLIAGYE
Sbjct: 61 LSDANQCFHEMNEKNLITWNTLIAGYE 87

The following BLAST results are available for this feature:
BLAST of CsaV3_1G037940 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011659402.15.0e-44100.00PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Cucum... [more]
XP_008450527.13.2e-4398.85PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Cucum... [more]
XP_022989366.12.2e-3685.06putative pentatricopeptide repeat-containing protein At1g56570 [Cucurbita maxima... [more]
XP_022157012.13.8e-3688.51putative pentatricopeptide repeat-containing protein At1g56570 [Momordica charan... [more]
XP_022931578.16.5e-3685.06putative pentatricopeptide repeat-containing protein At1g56570 [Cucurbita moscha... [more]
BLAST of CsaV3_1G037940 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G56570.11.1e-2156.32Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT3G50420.12.0e-1535.58Pentatricopeptide repeat (PPR) superfamily protein[more]
AT4G16835.12.7e-1537.50Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT3G53360.12.2e-1438.54Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT4G39530.11.1e-1339.08Tetratricopeptide repeat (TPR)-like superfamily protein[more]
BLAST of CsaV3_1G037940 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9FXA9|PPR83_ARATH2.0e-2056.32Putative pentatricopeptide repeat-containing protein At1g56570 OS=Arabidopsis th... [more]
sp|Q9SCT2|PP277_ARATH3.7e-1435.58Pentatricopeptide repeat-containing protein At3g50420 OS=Arabidopsis thaliana OX... [more]
sp|Q9M4P3|PP316_ARATH4.8e-1437.50Pentatricopeptide repeat-containing protein At4g16835, mitochondrial OS=Arabidop... [more]
sp|Q9LFI1|PP280_ARATH4.1e-1338.54Pentatricopeptide repeat-containing protein At3g53360, mitochondrial OS=Arabidop... [more]
sp|Q9SVP7|PP307_ARATH2.0e-1234.48Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana OX... [more]
BLAST of CsaV3_1G037940 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LW37|A0A0A0LW37_CUCSA3.3e-44100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G555630 PE=4 SV=1[more]
tr|A0A1S3BQ30|A0A1S3BQ30_CUCME2.1e-4398.85putative pentatricopeptide repeat-containing protein At1g56570 OS=Cucumis melo O... [more]
tr|M0ZSH9|M0ZSH9_SOLTU1.5e-2567.82Uncharacterized protein OS=Solanum tuberosum OX=4113 GN=102588331 PE=4 SV=1[more]
tr|K4B1B1|K4B1B1_SOLLC1.5e-2567.82Uncharacterized protein OS=Solanum lycopersicum OX=4081 GN=101248822 PE=4 SV=1[more]
tr|A0A2P2QM51|A0A2P2QM51_RHIMU2.0e-2567.82Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G037940.1CsaV3_1G037940.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 1..100
e-value: 9.6E-14
score: 53.4
NoneNo IPR availablePANTHERPTHR24015:SF909SUBFAMILY NOT NAMEDcoord: 44..89
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 44..89

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G037940Cla97C03G068180Watermelon (97103) v2cucwmbB035
CsaV3_1G037940Bhi02G001825Wax gourdcucwgoB092
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G037940Cucumber (Gy14) v2cgybcucB001
CsaV3_1G037940Cucurbita maxima (Rimu)cmacucB0120
CsaV3_1G037940Cucumber (Gy14) v1cgycucB035
CsaV3_1G037940Cucurbita maxima (Rimu)cmacucB0062
CsaV3_1G037940Cucurbita moschata (Rifu)cmocucB0048
CsaV3_1G037940Cucurbita moschata (Rifu)cmocucB0109
CsaV3_1G037940Cucurbita pepo (Zucchini)cpecucB0446
CsaV3_1G037940Cucurbita pepo (Zucchini)cpecucB0821
CsaV3_1G037940Wild cucumber (PI 183967)cpicucB000
CsaV3_1G037940Bottle gourd (USVL1VR-Ls)cuclsiB086
CsaV3_1G037940Melon (DHL92) v3.5.1cucmeB059
CsaV3_1G037940Melon (DHL92) v3.6.1cucmedB056
CsaV3_1G037940Watermelon (Charleston Gray)cucwcgB043
CsaV3_1G037940Watermelon (97103) v1cucwmB018