CsaV3_1G037350 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G037350
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 23259578 .. 23259838 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTAACAAAAGTGGTTTTGAGTGGTGGGTTCTTCTTGTTCTTCGTCTTTGGTGGTTTGATGATGATGCTGTTTGTTGTTGTTTTTGTTGTTCTCAGGCAGGCTCTCACCATGAGAGCCTCCTCTCTCCATCAGATGCTAATATTACTCTCTGTTTCTGCTTAAAAAAAAAACCCAAAAATAGAGAGAAGAATGAGAAGAAGAGGAAGAGGGAAGTGATGGAAGTCTCAATCAAAGACACTAATCTCGAGGATTTCTAA

mRNA sequence

ATGTTTAACAAAAGTGGTTTTGAGTGGTGGGTTCTTCTTGTTCTTCGTCTTTGGTGGTTTGATGATGATGCTGCAGGCTCTCACCATGAGAGCCTCCTCTCTCCATCAGATGCTAATATTACTCTCTGTTTCTGCTTAAAAAAAAAACCCAAAAATAGAGAGAAGAATGAGAAGAAGAGGAAGAGGGAAGTGATGGAAGTCTCAATCAAAGACACTAATCTCGAGGATTTCTAA

Coding sequence (CDS)

ATGTTTAACAAAAGTGGTTTTGAGTGGTGGGTTCTTCTTGTTCTTCGTCTTTGGTGGTTTGATGATGATGCTGCAGGCTCTCACCATGAGAGCCTCCTCTCTCCATCAGATGCTAATATTACTCTCTGTTTCTGCTTAAAAAAAAAACCCAAAAATAGAGAGAAGAATGAGAAGAAGAGGAAGAGGGAAGTGATGGAAGTCTCAATCAAAGACACTAATCTCGAGGATTTCTAA

Protein sequence

MFNKSGFEWWVLLVLRLWWFDDDAAGSHHESLLSPSDANITLCFCLKKKPKNREKNEKKRKREVMEVSIKDTNLEDF
Homology
[Close]
BLAST of CsaV3_1G037350 vs. NCBI nr
Match: KGN65926.1 (hypothetical protein Csa_1G538240 [Cucumis sativus])

HSP 1 Score: 63.2 bits (152), Expect = 4.6e-07
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1  MFNKSGFEWXXXXXXXXXXXXXXXXXXXXXXLLSPSDANITLCFXXXXXXXXXXXXXXXX 60
          MFNKSGFEWXXXXXXXXXXXXXXXXXXXXXXLLSPSDANITLCFXXXXXXXXXXXXXXXX
Sbjct: 1  MFNKSGFEWXXXXXXXXXXXXXXXXXXXXXXLLSPSDANITLCFXXXXXXXXXXXXXXXX 60

Query: 61 XXXVMEVSIKDTNLEDF 78
          XXXVMEVSIKDTNLEDF
Sbjct: 61 XXXVMEVSIKDTNLEDF 77

[Close]
BLAST of CsaV3_1G037350 vs. TrEMBL
Match: tr|A0A0A0M156|A0A0A0M156_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G538240 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.1e-07
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1  MFNKSGFEWXXXXXXXXXXXXXXXXXXXXXXLLSPSDANITLCFXXXXXXXXXXXXXXXX 60
          MFNKSGFEWXXXXXXXXXXXXXXXXXXXXXXLLSPSDANITLCFXXXXXXXXXXXXXXXX
Sbjct: 1  MFNKSGFEWXXXXXXXXXXXXXXXXXXXXXXLLSPSDANITLCFXXXXXXXXXXXXXXXX 60

Query: 61 XXXVMEVSIKDTNLEDF 78
          XXXVMEVSIKDTNLEDF
Sbjct: 61 XXXVMEVSIKDTNLEDF 77

The following BLAST results are available for this feature:
BLAST of CsaV3_1G037350 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN65926.14.6e-07100.00hypothetical protein Csa_1G538240 [Cucumis sativus][more]
BLAST of CsaV3_1G037350 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G037350 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G037350 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0M156|A0A0A0M156_CUCSA3.1e-07100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G538240 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G037350.1CsaV3_1G037350.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G037350Wax gourdcucwgoB028
CsaV3_1G037350Wax gourdcucwgoB043
CsaV3_1G037350Cucumber (Chinese Long) v3cuccucB051
CsaV3_1G037350Silver-seed gourdcarcucB0428
CsaV3_1G037350Silver-seed gourdcarcucB0430
CsaV3_1G037350Silver-seed gourdcarcucB0454
CsaV3_1G037350Silver-seed gourdcarcucB0455
CsaV3_1G037350Cucumber (Gy14) v2cgybcucB001
CsaV3_1G037350Cucumber (Gy14) v1cgycucB020
CsaV3_1G037350Cucumber (Gy14) v1cgycucB267
CsaV3_1G037350Cucurbita maxima (Rimu)cmacucB0240
CsaV3_1G037350Cucurbita maxima (Rimu)cmacucB0251
CsaV3_1G037350Cucurbita maxima (Rimu)cmacucB0469
CsaV3_1G037350Cucurbita maxima (Rimu)cmacucB0480
CsaV3_1G037350Cucurbita moschata (Rifu)cmocucB0226
CsaV3_1G037350Cucurbita moschata (Rifu)cmocucB0237
CsaV3_1G037350Cucurbita moschata (Rifu)cmocucB0461
CsaV3_1G037350Cucurbita moschata (Rifu)cmocucB0469
CsaV3_1G037350Cucurbita pepo (Zucchini)cpecucB0025
CsaV3_1G037350Cucurbita pepo (Zucchini)cpecucB0032
CsaV3_1G037350Cucurbita pepo (Zucchini)cpecucB0626
CsaV3_1G037350Cucurbita pepo (Zucchini)cpecucB0639
CsaV3_1G037350Wild cucumber (PI 183967)cpicucB000
CsaV3_1G037350Wild cucumber (PI 183967)cpicucB316
CsaV3_1G037350Bottle gourd (USVL1VR-Ls)cuclsiB019
CsaV3_1G037350Bottle gourd (USVL1VR-Ls)cuclsiB023
CsaV3_1G037350Bottle gourd (USVL1VR-Ls)cuclsiB035
CsaV3_1G037350Melon (DHL92) v3.5.1cucmeB013
CsaV3_1G037350Melon (DHL92) v3.5.1cucmeB091
CsaV3_1G037350Melon (DHL92) v3.6.1cucmedB027
CsaV3_1G037350Melon (DHL92) v3.6.1cucmedB012
CsaV3_1G037350Melon (DHL92) v3.6.1cucmedB084
CsaV3_1G037350Watermelon (Charleston Gray)cucwcgB044
CsaV3_1G037350Watermelon (Charleston Gray)cucwcgB045
CsaV3_1G037350Watermelon (97103) v1cucwmB019
CsaV3_1G037350Watermelon (97103) v1cucwmB020
CsaV3_1G037350Watermelon (97103) v1cucwmB066
CsaV3_1G037350Watermelon (97103) v2cucwmbB013
CsaV3_1G037350Watermelon (97103) v2cucwmbB036
CsaV3_1G037350Watermelon (97103) v2cucwmbB037