CsaV3_1G037220 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G037220
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 23134974 .. 23139829 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATTAATCCGGTTAGAACAAATACCGAGAGAAGTAAAGTGAAAAGGCGAGAATGAAAAACGATGATGTTCCTGAAGAGTGGGGAACAAAAAATAGCCGTTTTATATAATTACTAGCCGTTGAAAATTTCAATTACTTCACACGTTTGGGAACTCAAAGGAACGATGGTTGTTGATGGGTCGAGTCCGGTTGGATCATCTCCCGAAGTCAAATAACATTAGTTTTTTCGATAAAATTATTTAATTATTTTTTTAAAAAGTTATTTAAAATCAAATCGATACATGTATGTGCTGAGAACTAAGAATATGTTCAAACTCTTTCCTCCGTTTGTATTAAAAAAATGTATGCGTAATAAAAAGTTGTAAAATCATTAACGAACACATAACTTTGCTATTGTGACAAATTGAATTGTGTACATGTGATAGATCTTTACTCCCATGTGTTGAAAGGGGAGATCTTTGAGTGGAGTTTGATTGCTTGAGATCATAAATATGTCTAGTGATGTTGTTGATGATTCTTAAGTCTTATTTGTTCATGTTCAACGCAATTAGAATGTTCTGACACACTATAGTGCGCATAAATCTTGGAGGATTTTGAGAGTTTTAAGTTATTTCTTCTCCTTGTTCTGAGTAGTTTATTATCACTTGGTCTTGTGTGACATGCTTGTGTAATTTCTTTTTTGTGTTTGTTCCTTCAAAAAAAATGATAATGGTAAAGGGACAGCTGAATTTGGGACTTAACAATGAGACTTTATTTAATTAGCTCGAGAGGGACTTGTTTATGGTATGATTACAATTAAATTGTTCATAAGATAATGAATGATCTTTAAGAAGATAGCAATAATTATAAGGACAAAACAAATTAAAATTAACAAAAATATCAAATTGGCATATAAAGTTTGTTATATTTATAAATAAGTGGGATAATCATGATAATCTAAATTCAAATATTTGTTAATATATTAGTAATCTTAAATTACTGATATCAATATCAACCTAAAGTCATTGTATGATATTTACTTCCTACTGCAATATACGAAATGGCAAAATTACCACTACAATTTTAGTTCAATTGATACATGTTTGTATCGCAAAACAAGAGATTATAGCTTCATACACACATACACACATTCACACATACATAATCTACAATACATGTATATTACATTGTTGATGCAAGTATGTAAATGATAGATTTATATCGATTAATCATAAATTCCATACAAAATTACTTTTGATCGAACCAAAAATAGATATAGAAAAAAAGTTGTTTTAGATGCTTCCTAAATCATATTATTTCTTAATTATCTAAAATTACTTGTTATTTTATTTCATAAACGATTAAAGTTGTCCTTCACACCAATTCATCCTATATTAATTAAATATAAATTGATTCAACATTTCTATAACCATTATTTTTCTTCAACCTATATAAAATAATTTAAATCAAATAAAATATTTTACAACTTAAATAATGTATTTTTAAAAATAACTAATAACAAAGTTGTTTTATTTTAATAACATATATTTATTTCAAAGTAATATAAAATATTTACAACCAACTTAACAAAATAAAAAATTTATTGATTTGTGATTGATATTCCTCACTTCTCTTTCTTCCTATTTGGGATTTATTTATCTTCTTTATGACCTAAATGATCGTCTATCTGATCAACGCGATCGTTTAACATTGTCAACACAATTGTTTATATTTGAAGTCATTTTTCATAGTTTAAAAATAACTACGTGATCGTGTGAATGCGATATAAACGATCGTTTACCAAGTCAACACAATCGTTTAGATTTGAAGTTTTTTTTTTCTATTGTTTAAAAAGAATTACACGATTGTGTGAATATAATCTAAATGATCGTTTACCCAGTCAACATGATTGTTTAGATTCGAAACATTTTTTCCTTCGTTTAAAAAGAATTACAGGATCACGTGGATATGTCGTAAACAATCACGTAGCATAATCAACAAGATCGTTTATATTTGAAGCATTTTTTATCATCTTTAAAAAAACTACACGATCGTGTATCATTTCCTACATGAGCGTGTATCATGATTATTTATAAGAATAATTACATGCGTGCGTTTGGCCAATTAATCTAGTGTTAACTGGGACTTTTTTTTTTTTTTTTGCATTTTTCATTGTAAGTGTGGATTTTTTTTGTCGGTTTGTTGTATTTTTTAAAGAATAGTTGCAAATTTAGCTATTAGATTCAAAATAATTAAGTATATTGCAATATTTTAAATTTTTTGAAAATTTATCAACTAGTGAGAGACCATTTCGCAAATATTGGTATATCAGCTATAGATTATACAAGTTTATTAGCAATACAAGTCTATCATGCTATATTTGTAATTTTTTAAAAATGTTGTTATATCCTTAATTATTATTTCTAAAATGGTCATCAATTACAATTTTACTTTTTTCAGAGACTCTTATATATAACGATATTTTTATTTTATTTTATTCAATCATTTAATTCAAATAAATAAAAAATATACAATATTAATATTCAATTATAAAAAAGTATCAATACTTAACCTAATAAATGACTCTATTAAATATCATGATATAAATAATTAAACAATGTCTCCTGTCATTACAGCTAAGTTACCAAAATTTAATAAACAATTTTTTGGTGGTTATTTTTCATAAATATAATAAACCGATAAAACACGTACAATGTGTATAACAAAATGAAAAAGCTCATTAATCTGGTTATTTTAAATATTCCATATTTGCTCTTTCTTTTCATCGTTTTCCTTTCCTCCCCTAATGTGTTTTTTTTGTCATTTTCCATATTCATTCTTTTACAATTCAGTCCAAGCCCAACAAGCAAATGAGCCCAATAACACATAAAACTCATGAAATTTCTCTATAAATAGAGACCATTGTCATTCATTTTGAAAGATTTTAGATTGAAGTAAAATTTGAACATTCAAACTTCTACAAGCTCTCGATATGTGTAAGTCCAACCAACATATTTTGAAAGACTGAACTCATATCAACATTTTCTGAAAGATCGAATACTTGGAAGATTAAACTTTTATTGGATTTCAGAAGATTGAAGTTCATATCGACTTGTAACTACAACATCCTAAAGACCGGAGATCGATAATTTTTAACTTGTATTCGAGATAAAATATCAAATTAGTAAATACTAAAGATTTTATTCACAATATTCATCAATATATCGAAGTTCAATTCCAGGAAATACATTTATTCAAAATCTCACGTGAAACTGCATTAAACTAACTATGATTGATTTAATAAATATTAGCTCAAACCACGTAGGAGTACAAACCCATCTTTAGTGGATCAATTACCGGCATAGGATATCCATCTTTGATTTATTAAAAAATGTTGTCCATTTGGATTTTTTTCAAATTAATACCGATAGAACATTTTCTTACCTTCAATTTATTCAATTTTTGTTGAGATTATTTTTTATCAATTGATTCAATTTTTCGATCTAATACTCTCCGAATCTAGTAAATAGATTTTGCCAAAACAACCCACTCTTCTCTTTCCAAACTCCAATAGAACAACAGCCCACTATTCTCTTTTAAAATTCGGCCCAATGGGTTCTTTGTAAGGTGAGCCCACTTTGTAAAATAAAATAGAAAAGAGGAAAACCCTAAAACCACTTCTTCCTCACGCCACCATCTACTCCTCCGGCAGCTGAGTGTTGCCGCTCCTTTGCTCCAGTTCACGGCTGCTGCTGCAGCCATCGTCTTTCCTCCCTTCGCGCCGCCGAAGCTTCAGTCACAGTGGTTTTGCTCTGATTTTCTACTCCTTTTCTGTTACTGGTAGGTATTCTCCCAGCTTCCATCTATGGCTTTCTTCTCGCTTGGAAAACACGAATTTCAATTTACCTAATGATATAATGGAGGATTTGTTTGATTAAGGAACTATTTAATTCATAGTTTCATTGATTAACCGAACAACTTCAACCTGACTGATGTCAATTGGTTTAATCACTTCAATTTTATAAACTAGCTTGCTACAAAAGATAAACAAACAACAATGGAGTGTGTCCATAAAGAACGTGTGAAGAAAACGGGAAAACAAAAGTAGAGCGAAAAGAAAATAAAAATTTTGCAATGCCCATTCTGATCTTTACATTTTCCATGACATTGCTCTTTCACTCATTATTTCTAGCTCTACCTTCTTATATCCCCTGCAATGAATTAGAGAAGAAATGTCCGCATACTGTAGATATAGGGAGGAAGGCCTAAAGAATAGCTCAGATTCGTAATGGCCCTTTCGTGATTCAAATCACTCACTCACCCTAAGAATTGAGTAAACCACAATTAATTCACAATTTTACTTTTACTTTTAAACAATGGACAAAAGTATAAAATTTGTCTTCTTTAACACCATTTTGTAGAATGATAAAAAATTGAAGAACTTAGAAAAGAACAATGTAAGTAAATGAAGTAAAAAAAATATGGCAGAATATGGTGAATTTCTCTCCTATAGCCACTTCTATATAAATATCTATATATATTGCATAGATATAGATAGTCAGGAAAAGGCCATTAATGAGAGTATAGAAAAAATACCATTAAAAATTCCTTAAGAAAAGGTATAATTATCAATAAACTAAGGTGTAAAAAAGGTTTTTAGTTATATTTGGAATTCAAAAAAAATCTGTGCCCTTTGATTAGTTATCCTTAGAAAAGCGGCAGAGCCTTCTACTTATAGGCCAACTCCTGATTTCTAAAGCAATATATTATGCAACTTGGCTGCAAAATCTCTAATTCTCACGAATTTTCTTTGTTTGGTTTAAATCTTTATAATGGTTTTTCGTGGTTGTCATAGGTCATTCGGCTTTGGGTGA

mRNA sequence

ATGGGATTAATCCGAAAAGAGGAAAACCCTAAAACCACTTCTTCCTCACGCCACCATCTACTCCTCCGGCAGCTGAGTGTTGCCGCTCCTTTGCTCCAGTTCACGGCTGCTGCTGCAGCCATCGTCTTTCCTCCCTTCGCGCCGCCGAAGCTTCAGTCACAGTGGTTTTGCTCTGATTTTCTACTCCTTTTCTGTTACTGGTCATTCGGCTTTGGGTGA

Coding sequence (CDS)

ATGGGATTAATCCGAAAAGAGGAAAACCCTAAAACCACTTCTTCCTCACGCCACCATCTACTCCTCCGGCAGCTGAGTGTTGCCGCTCCTTTGCTCCAGTTCACGGCTGCTGCTGCAGCCATCGTCTTTCCTCCCTTCGCGCCGCCGAAGCTTCAGTCACAGTGGTTTTGCTCTGATTTTCTACTCCTTTTCTGTTACTGGTCATTCGGCTTTGGGTGA

Protein sequence

MGLIRKEENPKTTSSSRHHLLLRQLSVAAPLLQFTAAAAAIVFPPFAPPKLQSQWFCSDFLLLFCYWSFGFG
Homology
[Close]
BLAST of CsaV3_1G037220 vs. NCBI nr
Match: KGN65914.1 (hypothetical protein Csa_1G537620 [Cucumis sativus])

HSP 1 Score: 65.9 bits (159), Expect = 6.7e-08
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0 

Query: 46 FAPPKLQSQWFCSDFLLLFCYWSFGFG 73
          FAPPKLQSQWFCSDFLLLFCYWSFGFG
Sbjct: 46 FAPPKLQSQWFCSDFLLLFCYWSFGFG 72

[Close]
BLAST of CsaV3_1G037220 vs. TrEMBL
Match: tr|A0A0A0LY02|A0A0A0LY02_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G537620 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.4e-08
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0 

Query: 46 FAPPKLQSQWFCSDFLLLFCYWSFGFG 73
          FAPPKLQSQWFCSDFLLLFCYWSFGFG
Sbjct: 46 FAPPKLQSQWFCSDFLLLFCYWSFGFG 72

The following BLAST results are available for this feature:
BLAST of CsaV3_1G037220 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN65914.16.7e-08100.00hypothetical protein Csa_1G537620 [Cucumis sativus][more]
BLAST of CsaV3_1G037220 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G037220 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G037220 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LY02|A0A0A0LY02_CUCSA4.4e-08100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G537620 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G037220.1CsaV3_1G037220.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G037220Cucumber (Chinese Long) v3cuccucB051
CsaV3_1G037220Silver-seed gourdcarcucB0430
CsaV3_1G037220Silver-seed gourdcarcucB0454
CsaV3_1G037220Silver-seed gourdcarcucB0455
CsaV3_1G037220Cucumber (Gy14) v2cgybcucB001
CsaV3_1G037220Cucumber (Gy14) v1cgycucB020
CsaV3_1G037220Cucumber (Gy14) v1cgycucB267
CsaV3_1G037220Cucurbita maxima (Rimu)cmacucB0240
CsaV3_1G037220Cucurbita maxima (Rimu)cmacucB0251
CsaV3_1G037220Cucurbita maxima (Rimu)cmacucB0480
CsaV3_1G037220Cucurbita moschata (Rifu)cmocucB0226
CsaV3_1G037220Cucurbita moschata (Rifu)cmocucB0237
CsaV3_1G037220Cucurbita moschata (Rifu)cmocucB0469
CsaV3_1G037220Cucurbita pepo (Zucchini)cpecucB0025
CsaV3_1G037220Cucurbita pepo (Zucchini)cpecucB0032
CsaV3_1G037220Cucurbita pepo (Zucchini)cpecucB0626
CsaV3_1G037220Cucurbita pepo (Zucchini)cpecucB0639
CsaV3_1G037220Wild cucumber (PI 183967)cpicucB000
CsaV3_1G037220Wild cucumber (PI 183967)cpicucB316
CsaV3_1G037220Bottle gourd (USVL1VR-Ls)cuclsiB019
CsaV3_1G037220Bottle gourd (USVL1VR-Ls)cuclsiB023
CsaV3_1G037220Bottle gourd (USVL1VR-Ls)cuclsiB035
CsaV3_1G037220Melon (DHL92) v3.5.1cucmeB013
CsaV3_1G037220Melon (DHL92) v3.5.1cucmeB091
CsaV3_1G037220Melon (DHL92) v3.6.1cucmedB027
CsaV3_1G037220Melon (DHL92) v3.6.1cucmedB012
CsaV3_1G037220Melon (DHL92) v3.6.1cucmedB084
CsaV3_1G037220Watermelon (Charleston Gray)cucwcgB044
CsaV3_1G037220Watermelon (Charleston Gray)cucwcgB054
CsaV3_1G037220Watermelon (97103) v1cucwmB019
CsaV3_1G037220Watermelon (97103) v1cucwmB030
CsaV3_1G037220Watermelon (97103) v1cucwmB066
CsaV3_1G037220Watermelon (97103) v2cucwmbB013
CsaV3_1G037220Watermelon (97103) v2cucwmbB045
CsaV3_1G037220Watermelon (97103) v2cucwmbB037
CsaV3_1G037220Wax gourdcucwgoB028
CsaV3_1G037220Wax gourdcucwgoB043