CsaV3_1G036970 (gene) Cucumber (Chinese Long) v3

NameCsaV3_1G036970
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 22871811 .. 22875527 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CGACATTCACGAAGTGCGTCTATAGATCGCCTACATATTTGAGTTATGTATTCACAGAACATAAAACTCAAATCAAAAGGAAAAGAGGAAGAGACCAAGAGAGAGAGATCGTCATTCGACCGTTGCCTTCTGCCGCTGCCATTCCCTCCATCTTTGTCTTTGTCACAACCTTTTGGATAGAGGTAATTCAAAGTTTAAAATCCTAAATATAAACCTCTTTGAATTTGTTCTTAATTTATTTTTCTATCATCGGGTTTTTTTTATTCTAACTCTCCCAATATTTCTTCTTGATTTATGTTTTTTTGTTGTATTCAACAGTTTGGAATGTGTTGTAATCGCTCTTTATGTTCTTGGCAACAATGATGAGTTTAGAAGGTAAAGTATGGTTTTATTTTTCTTGTTGTTTACTTACTGCTTAGTGTGTCTTTATTGTTTGAATATTTGCATATGTTCGTTTGCACACAACAACCGCAAAAGAGGAGAAAGTTGAAAAATATGATGACATGGATGGTAATCTAAGCAAGGAAGACGATGACAATGACAATGAGAACAATTGTAATACGTATTAAATTAATTAATCTTTGAAGCTATTACTATTTTTTAAACATCTGTTAGTGTGTTTTTTATATAGTGTCCCCTAAATAAAATTTCTAGATCTGCCACTTAATAGAACAATACTCTTTATTATTGTTGACCATTGATCACAAGTCTATCTAACCTATTGCTTCTTAGAGATTAACATACAATTCTTATGTCACATATTATACATTAATCTAACATGCAATTGCACGATCAAGACATTAGTTGTCAATCAATAACAAGAAAATGTAATTCATAAGAACCAATAAATCAATAATAAAACTCAAACAAGAAATCTCAACCATATAATCAAAATACTCCAAAAAAAATATAATGAATCCTAAAAAATCCTCAAAATAAGAAAGAACAAAGATCTTATCCTTCTACAATGGTGGAAAAGATAGAGACCCATATTGTTTTGGCTTGATTATAGAGATTAGATAAATATAAACCAAAAATCTAATTTTGTATATAAATAAAGCACATAAAACAAAGAAAATGAGTGATCTGCACTATGACATTGTTGCGTTGTAGAATAGTAATGTGGCGTTGTCACAAAATGCAGATTATGCACATTTTTAATGACAACGTTGTAATTTTTGAGGTTTTTTGGCCTAATTTCTTCGTTAAGATTATGTATTTGATCCATTTTAACTCAATTTTCTCCTTAATGTTCGATTCTACATCTTTTGACTCTCGAAACCTATAAAATAATCAAATTAAAATGTAAAAATCATAAGGCGATCTTGAATTAAGCAAGATTAAATGACATTTTGATACTATCAAACTACCACCATACTTTATTTTTGCATTATGCTCTAACTTATTATCATTAGTGTTGTTAATTACTTGTACCAGAATTTATTTGACTTTGGCCTCAATGATTTTTTATTTTTCAAGTATATGACGTGATTTAAAAAATAGCAAATATTTAGGAACAAAATGATTAGATAATCCCTATTTGATTTGAAAAGGCAAAAATGTGGGCATTTCCATGTTGGATATTGGGCTGGGCTTGTATAATAAGGTGCACTACAAACTCAACTCCGGCCCAATCCATATACCAAACTTTCTTATTTGCTATTTTCATTCATCCATTCATACTCAAATTAAAATTTATACCCTACGAAGTAAAAGCCAATAATGATTATAAATTCACGTATCCATCGATTATTTTTAGAGATAACCGTGCCAATAGAAAAATGATCATAGTCATATTACAAGATTGTCCTCCATTCTTGTCTATGATTACTGTGTCTTATAACAATTGATTCTCCTCACAAACTATCATTATATCCAAGCTCAAGCTATCATATGATGAGATAACATTGAAGGAGACCTGATTCGAGGAGACAAAAATATGCCAATGCCTGAACGAACATGGTGGATGAGGCTTTAGATGATCATGAATATTTAGAAGCTCAACATAATGAGACATCAAATGATCACAACCGTTTACCATAATCCACGTTGAGACCATAGATACATATAGAGATGGCTCATAGAGTAGATACAAATATTGAAGCAAAGGGTTTCGAGGGGGATGACAAGTCCTAGAGAGACACAGACATTCAAAATTCTATAAATGTCTTCATTAAGAAATGCCCAATGCTCGAAAGGATATATCGAGACTAACTAATATAGTCTCAAATATGTTTGATACCATAAATCGCTAGCAAACTGAATTGGTGGAAATTAAGCAGATGGTTTGGTGGTTGGTTAAGGTATGCTTCACATTATTTTCTTACATATTAGTTTTACACGATCGTTTAGGCTTGTCTACACAATCGTTTAGTTATTTTACACAATCTTTTATAACTTGTAAGCAATTGTTTAATATAGTTAAACAACCATGTTGATAATCTAAATGATTGTTTAATTATAATCAGTACACGATCATTTAGGTTTTTTTATGTATATTTTTATTTCTTTTTAGAGTGTTTCATAATCTAAACGCATAATCTAGAGACACCAATAACAGAAACGAAACTGATAAAGGAGGTGATGAAGGTGGACACGCACACGAGGATCATGATGTTGGTGTGCATGAGACCCATCAAGCTGACAAAGGATATGGTTGAACCAACAATAGACCCATTGAACGATTAATCTTGCGGTGGTATGTATGACCCACATGTTCATATTTGAACTTTATCAAATGTCCGATAACCGAACTTTTGTTTTACAGTGATTGCCCAATCAAAATTCAAGAGAGCTTGAATTCTCACTAGGATATTTCTTAATCTTGAATTAATCACTTTCATCCATTCCAGTGGCATGTACTAACCATTTTCATTCCTCTATTGCACGTCTCACAGCTAATTAGTAGATTTTTTATCGACTTCTTCACACGATAATCAAGATTTCTTTCTTCTAGCAAGTATTGATAACTTAACGACAAGTTTTGCTTTGAAAAGAAAATTTTATCTACCCTTATATCATCATCAGTAAACAATCGTGAGGGATTGTGGTGACGTCGTCATATGATGACCCATCCAACGATGGTGGTGTATGCACAAATGAAACGGGTGGAGTTTCAACAAGTGGATATGCTTATTACCGACCATATTCATTTCGATCACATCGTGAGTCAAACGTCTCGTGTGCATTGTGACCACTCCAAGATGCATATATTAGTATCGTCACCCAAATCACACAACGCATTCCCATCATACAATGGAGACATAAACGAGATACCATGTGATCAAGATGAAATGGTTGGATCGTTCGCATGAAGGGAATACGTGGGTCTTTGATCGTTCGCATAATGGGTTAGTGAGATTTTTTATTTTATTTTTTTATATTAGGTTATTTTATGAAATTTTCCAACTTAGAGAGAAGAAAAACATGAAGGTGCTATTGTGAGTGTTGCTGATTGGTGTAGGGTCTTCAAATGGTAGTCGACTATGACATCGCCTTGGGTGTCGCAGAGAAGGTGGTTTTTGAGTGAGGGCTTCCTTTTTTACGTGGGTCTTTTCGAGTTGGCAGATGCTTGGATCTTTTCTGAATGGAGGTGGGTTTCATTTCTAGAAGCATTAGCCGACATGTAGGTCTCTCAGTTTATTGTGTGTTTTGTCGACTGTATATTCGAGTTTGAAGAAGTTTACGGAAATGATTGGTCTCTCTTAAGAGATAGAG

mRNA sequence

ATGATGACCCATCCAACGATGGTGGTGTATGCACAAATGAAACGGGTGGAGTTTCAACAAGTGGATATGCTTATTACCGACCATATTCATTTCGATCACATCGTGAGTCAAACGTCTCGTGTGCATTGTGACCACTCCAAGATGCATATATTAGTATCGTCACCCAAATCACACAACGCATTCCCATCATACAATGGAGACATAAACGAGATACCATGTGATCAAGATGAAATGGTTGGATCGTTCGCATGA

Coding sequence (CDS)

ATGATGACCCATCCAACGATGGTGGTGTATGCACAAATGAAACGGGTGGAGTTTCAACAAGTGGATATGCTTATTACCGACCATATTCATTTCGATCACATCGTGAGTCAAACGTCTCGTGTGCATTGTGACCACTCCAAGATGCATATATTAGTATCGTCACCCAAATCACACAACGCATTCCCATCATACAATGGAGACATAAACGAGATACCATGTGATCAAGATGAAATGGTTGGATCGTTCGCATGA

Protein sequence

MMTHPTMVVYAQMKRVEFQQVDMLITDHIHFDHIVSQTSRVHCDHSKMHILVSSPKSHNAFPSYNGDINEIPCDQDEMVGSFA
BLAST of CsaV3_1G036970 vs. NCBI nr
Match: KGN65889.1 (hypothetical protein Csa_1G537390 [Cucumis sativus])

HSP 1 Score: 174.9 bits (442), Expect = 1.2e-40
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0

Query: 1  MMTHPTMVVYAQMKRVEFQQVDMLITDHIHFDHIVSQTSRVHCDHSKMHILVSSPKSHNA 60
          MMTHPTMVVYAQMKRVEFQQVDMLITDHIHFDHIVSQTSRVHCDHSKMHILVSSPKSHNA
Sbjct: 1  MMTHPTMVVYAQMKRVEFQQVDMLITDHIHFDHIVSQTSRVHCDHSKMHILVSSPKSHNA 60

Query: 61 FPSYNGDINEIPCDQDEMVGSFA 84
          FPSYNGDINEIPCDQDEMVGSFA
Sbjct: 61 FPSYNGDINEIPCDQDEMVGSFA 83

BLAST of CsaV3_1G036970 vs. TrEMBL
Match: tr|A0A0A0LXW7|A0A0A0LXW7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G537390 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 7.8e-41
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0

Query: 1  MMTHPTMVVYAQMKRVEFQQVDMLITDHIHFDHIVSQTSRVHCDHSKMHILVSSPKSHNA 60
          MMTHPTMVVYAQMKRVEFQQVDMLITDHIHFDHIVSQTSRVHCDHSKMHILVSSPKSHNA
Sbjct: 1  MMTHPTMVVYAQMKRVEFQQVDMLITDHIHFDHIVSQTSRVHCDHSKMHILVSSPKSHNA 60

Query: 61 FPSYNGDINEIPCDQDEMVGSFA 84
          FPSYNGDINEIPCDQDEMVGSFA
Sbjct: 61 FPSYNGDINEIPCDQDEMVGSFA 83

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN65889.11.2e-40100.00hypothetical protein Csa_1G537390 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0LXW7|A0A0A0LXW7_CUCSA7.8e-41100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G537390 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G036970.1CsaV3_1G036970.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None