CsaV3_1G036860 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G036860
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 22702710 .. 22703025 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAAGATCGAAAGACAAAGAAGAGTCAGAGACGGAGGAGATGGAGGAGATCTCAGATTAGGGGAGACAGAGGGATTGAGATTTGAGATCGGCCTGCGGAGGAGACAGGTGGACAGGTCTAGGGTTGGATCGAAGATGTTGGAGGAGATGGATGCACAGGTCTCGAGTTGGATCTAAATATCAGAGGAGATGGACGGAGTTGAGAAGGAGGAGATGCCAGAGATGCTGCGAAGAGCGAGGGAGAGTAAGAGAGGTGAATTGTCTCGTGAGAAGTGTTGCACGAGGGAGAGCCGTGAGGGAGATAGAAATCTAA

mRNA sequence

ATGGTGAAGATCGAAAGACAAAGAAGAGTCAGAGACGGAGGAGATGGAGGAGATCTCAGATTAGGGGAGACAGAGGGATTGAGATTTGAGATCGGCCTGCGGAGGAGACAGGTGGACAGGTCTAGGGTTGGATCGAAGATGTTGGAGGAGATGGATGCACAGAGGAGATGGACGGAGTTGAGAAGGAGGAGATGCCAGAGATGCTGCGAAGAGCGAGGGAGAGTAAGAGAGGTGAATTGTCTCGTGAGAAGTGTTGCACGAGGGAGAGCCGTGAGGGAGATAGAAATCTAA

Coding sequence (CDS)

ATGGTGAAGATCGAAAGACAAAGAAGAGTCAGAGACGGAGGAGATGGAGGAGATCTCAGATTAGGGGAGACAGAGGGATTGAGATTTGAGATCGGCCTGCGGAGGAGACAGGTGGACAGGTCTAGGGTTGGATCGAAGATGTTGGAGGAGATGGATGCACAGAGGAGATGGACGGAGTTGAGAAGGAGGAGATGCCAGAGATGCTGCGAAGAGCGAGGGAGAGTAAGAGAGGTGAATTGTCTCGTGAGAAGTGTTGCACGAGGGAGAGCCGTGAGGGAGATAGAAATCTAA

Protein sequence

MVKIERQRRVRDGGDGGDLRLGETEGLRFEIGLRRRQVDRSRVGSKMLEEMDAQRRWTELRRRRCQRCCEERGRVREVNCLVRSVARGRAVREIEI
Homology
[Close]
BLAST of CsaV3_1G036860 vs. NCBI nr
Match: KGN65877.1 (hypothetical protein Csa_1G535810 [Cucumis sativus])

HSP 1 Score: 187.2 bits (474), Expect = 2.6e-44
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1  MVKIERQRRVRDGGDGGDLRLGETEGLRFEIGLRRRQVDRSRVGSKMLEEMDAQRRWTEL 60
          MVKIERQRRVRDGGDGGDLRLGETEGLRFEIGLRRRQVDRSRVGSKMLEEMDAQRRWTEL
Sbjct: 1  MVKIERQRRVRDGGDGGDLRLGETEGLRFEIGLRRRQVDRSRVGSKMLEEMDAQRRWTEL 60

Query: 61 RRRRCQRCCEERGRVREVNCLVRSVARGRAVREIEI 97
          RRRRCQRCCEERGRVREVNCLVRSVARGRAVREIEI
Sbjct: 61 RRRRCQRCCEERGRVREVNCLVRSVARGRAVREIEI 96

[Close]
BLAST of CsaV3_1G036860 vs. TrEMBL
Match: tr|A0A0A0LYF2|A0A0A0LYF2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G535810 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 1.8e-44
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1  MVKIERQRRVRDGGDGGDLRLGETEGLRFEIGLRRRQVDRSRVGSKMLEEMDAQRRWTEL 60
          MVKIERQRRVRDGGDGGDLRLGETEGLRFEIGLRRRQVDRSRVGSKMLEEMDAQRRWTEL
Sbjct: 1  MVKIERQRRVRDGGDGGDLRLGETEGLRFEIGLRRRQVDRSRVGSKMLEEMDAQRRWTEL 60

Query: 61 RRRRCQRCCEERGRVREVNCLVRSVARGRAVREIEI 97
          RRRRCQRCCEERGRVREVNCLVRSVARGRAVREIEI
Sbjct: 61 RRRRCQRCCEERGRVREVNCLVRSVARGRAVREIEI 96

The following BLAST results are available for this feature:
BLAST of CsaV3_1G036860 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN65877.12.6e-44100.00hypothetical protein Csa_1G535810 [Cucumis sativus][more]
BLAST of CsaV3_1G036860 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G036860 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G036860 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LYF2|A0A0A0LYF2_CUCSA1.8e-44100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G535810 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G036860.1CsaV3_1G036860.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G036860Wax gourdcucwgoB057
CsaV3_1G036860Silver-seed gourdcarcucB0235
CsaV3_1G036860Silver-seed gourdcarcucB0454
CsaV3_1G036860Cucumber (Gy14) v2cgybcucB001
CsaV3_1G036860Cucumber (Gy14) v1cgycucB230
CsaV3_1G036860Cucurbita maxima (Rimu)cmacucB0251
CsaV3_1G036860Cucurbita maxima (Rimu)cmacucB0467
CsaV3_1G036860Cucurbita moschata (Rifu)cmocucB0237
CsaV3_1G036860Cucurbita moschata (Rifu)cmocucB0458
CsaV3_1G036860Cucurbita pepo (Zucchini)cpecucB0032
CsaV3_1G036860Cucurbita pepo (Zucchini)cpecucB0626
CsaV3_1G036860Wild cucumber (PI 183967)cpicucB000
CsaV3_1G036860Bottle gourd (USVL1VR-Ls)cuclsiB023
CsaV3_1G036860Melon (DHL92) v3.5.1cucmeB027
CsaV3_1G036860Melon (DHL92) v3.6.1cucmedB026
CsaV3_1G036860Watermelon (Charleston Gray)cucwcgB054
CsaV3_1G036860Watermelon (97103) v1cucwmB030
CsaV3_1G036860Watermelon (97103) v2cucwmbB045