CsaV3_1G036720 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G036720
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 22552704 .. 22553123 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATAAACTACTCGTCCAAGACATATATAAACTCCGCGGGCTATATCAATTCAGCTTCCCAAGCACCACCCTAGTCCTTACATGTGAGGAAAAGGAAATACGAAGAGTCAGATATGCGTCGCAGCTGCACTTAGGAACTTGTAATTGCATTCGCGTTTCTTCGCGCAACAACTACAACAATACAACCCATTTCCCTACGCAATACACCGCCTTTGGCAAGGACGCGCCGTTCTTCGCTGAACAACAATTTCAATCTTCTGATTTCAGGGGGAAGGCAGCGGGCGGCCTATCGCATTCGCAGCAGAACTTCCCCCTTCCTATTCCCGGACTTCCGAACATTCTCCCGGTTTCCACCTCTCATCTCAAATTCCTCAATCCCTCTTTATTTTTCATCTCTGCACTATTCTCCATCAATTGA

mRNA sequence

ATGCATAAACTACTCGTCCAAGACATATATAAACTCCGCGGGCTATATCAATTCAGCTTCCCAAGCACCACCCTAGTCCTTACATGTGAGGAAAAGGAAATACGAAGAGTCAGATATGCGTCGCAGCTGCACTTAGGAACTTGTAATTGCATTCGCGTTTCTTCGCGCAACAACTACAACAATACAACCCATTTCCCTACGCAATACACCGCCTTTGGCAAGGACGCGCCGTTCTTCGCTGAACAACAATTTCAATCTTCTGATTTCAGGGGGAAGGCAGCGGGCGGCCTATCGCATTCGCAGCAGAACTTCCCCCTTCCTATTCCCGGACTTCCGAACATTCTCCCGGTTTCCACCTCTCATCTCAAATTCCTCAATCCCTCTTTATTTTTCATCTCTGCACTATTCTCCATCAATTGA

Coding sequence (CDS)

ATGCATAAACTACTCGTCCAAGACATATATAAACTCCGCGGGCTATATCAATTCAGCTTCCCAAGCACCACCCTAGTCCTTACATGTGAGGAAAAGGAAATACGAAGAGTCAGATATGCGTCGCAGCTGCACTTAGGAACTTGTAATTGCATTCGCGTTTCTTCGCGCAACAACTACAACAATACAACCCATTTCCCTACGCAATACACCGCCTTTGGCAAGGACGCGCCGTTCTTCGCTGAACAACAATTTCAATCTTCTGATTTCAGGGGGAAGGCAGCGGGCGGCCTATCGCATTCGCAGCAGAACTTCCCCCTTCCTATTCCCGGACTTCCGAACATTCTCCCGGTTTCCACCTCTCATCTCAAATTCCTCAATCCCTCTTTATTTTTCATCTCTGCACTATTCTCCATCAATTGA

Protein sequence

MHKLLVQDIYKLRGLYQFSFPSTTLVLTCEEKEIRRVRYASQLHLGTCNCIRVSSRNNYNNTTHFPTQYTAFGKDAPFFAEQQFQSSDFRGKAAGGLSHSQQNFPLPIPGLPNILPVSTSHLKFLNPSLFFISALFSIN
Homology
[Close]
BLAST of CsaV3_1G036720 vs. NCBI nr
Match: KGN65863.1 (hypothetical protein Csa_1G533700 [Cucumis sativus])

HSP 1 Score: 283.5 bits (724), Expect = 3.9e-73
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0 

Query: 1   MHKLLVQDIYKLRGLYQFSFPSTTLVLTCEEKEIRRVRYASQLHLGTCNCIRVSSRNNYN 60
           MHKLLVQDIYKLRGLYQFSFPSTTLVLTCEEKEIRRVRYASQLHLGTCNCIRVSSRNNYN
Sbjct: 1   MHKLLVQDIYKLRGLYQFSFPSTTLVLTCEEKEIRRVRYASQLHLGTCNCIRVSSRNNYN 60

Query: 61  NTTHFPTQYTAFGKDAPFFAEQQFQSSDFRGKAAGGLSHSQQNFPLPIPGLPNILPVSTS 120
           NTTHFPTQYTAFGKDAPFFAEQQFQSSDFRGKAAGGLSHSQQNFPLPIPGLPNILPVSTS
Sbjct: 61  NTTHFPTQYTAFGKDAPFFAEQQFQSSDFRGKAAGGLSHSQQNFPLPIPGLPNILPVSTS 120

Query: 121 HLKFLNPSLFFISALFSIN 140
           HLKFLNPSLFFISALFSIN
Sbjct: 121 HLKFLNPSLFFISALFSIN 139

[Close]
BLAST of CsaV3_1G036720 vs. TrEMBL
Match: tr|A0A0A0LVP0|A0A0A0LVP0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G533700 PE=4 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 2.6e-73
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0 

Query: 1   MHKLLVQDIYKLRGLYQFSFPSTTLVLTCEEKEIRRVRYASQLHLGTCNCIRVSSRNNYN 60
           MHKLLVQDIYKLRGLYQFSFPSTTLVLTCEEKEIRRVRYASQLHLGTCNCIRVSSRNNYN
Sbjct: 1   MHKLLVQDIYKLRGLYQFSFPSTTLVLTCEEKEIRRVRYASQLHLGTCNCIRVSSRNNYN 60

Query: 61  NTTHFPTQYTAFGKDAPFFAEQQFQSSDFRGKAAGGLSHSQQNFPLPIPGLPNILPVSTS 120
           NTTHFPTQYTAFGKDAPFFAEQQFQSSDFRGKAAGGLSHSQQNFPLPIPGLPNILPVSTS
Sbjct: 61  NTTHFPTQYTAFGKDAPFFAEQQFQSSDFRGKAAGGLSHSQQNFPLPIPGLPNILPVSTS 120

Query: 121 HLKFLNPSLFFISALFSIN 140
           HLKFLNPSLFFISALFSIN
Sbjct: 121 HLKFLNPSLFFISALFSIN 139

The following BLAST results are available for this feature:
BLAST of CsaV3_1G036720 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN65863.13.9e-73100.00hypothetical protein Csa_1G533700 [Cucumis sativus][more]
BLAST of CsaV3_1G036720 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G036720 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G036720 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LVP0|A0A0A0LVP0_CUCSA2.6e-73100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G533700 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G036720.1CsaV3_1G036720.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G036720CSPI01G24440Wild cucumber (PI 183967)cpicucB000
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G036720Silver-seed gourdcarcucB0362
CsaV3_1G036720Silver-seed gourdcarcucB0553
CsaV3_1G036720Cucumber (Gy14) v2cgybcucB001
CsaV3_1G036720Cucumber (Gy14) v1cgycucB230
CsaV3_1G036720Cucurbita maxima (Rimu)cmacucB0245
CsaV3_1G036720Cucurbita maxima (Rimu)cmacucB0250
CsaV3_1G036720Cucurbita maxima (Rimu)cmacucB0512
CsaV3_1G036720Cucurbita maxima (Rimu)cmacucB0522
CsaV3_1G036720Cucurbita moschata (Rifu)cmocucB0232
CsaV3_1G036720Cucurbita moschata (Rifu)cmocucB0236
CsaV3_1G036720Cucurbita moschata (Rifu)cmocucB0500
CsaV3_1G036720Cucurbita pepo (Zucchini)cpecucB0625
CsaV3_1G036720Cucurbita pepo (Zucchini)cpecucB0662
CsaV3_1G036720Bottle gourd (USVL1VR-Ls)cuclsiB031
CsaV3_1G036720Melon (DHL92) v3.5.1cucmeB025
CsaV3_1G036720Melon (DHL92) v3.6.1cucmedB023
CsaV3_1G036720Watermelon (Charleston Gray)cucwcgB051
CsaV3_1G036720Watermelon (97103) v1cucwmB026
CsaV3_1G036720Watermelon (97103) v2cucwmbB042
CsaV3_1G036720Wax gourdcucwgoB050