CsaV3_1G036290 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G036290
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 22249442 .. 22249892 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCAAACCAAAGACAAAACAACAACTAGCATGGATTATTCCAAAGCTCGTCTCAGTCTCGCCCTCTTCCTCTTGCTCTCGTTTGCCCTCGTTGCCTCGGCTCGGATCATACCCCATTCAGGTACGTAAGATTGCCAATTAACCTATATTATTCAATAGTCTAGATTTGATGTATAAAAAACTAAAGTCTAATATTATATCAGAAAACCAAGAAGCAGCTTATGTGATAAATGATTATCCTGATCCGGGAGCTAATCCAAGACATCGTCCACCACCCCCATCACGACATTCGTCCGAAGTTAGCGTTGTCAAGAGTCGCCTCATCAAGAACAAGCCCTAATGAAATTTTGCTTGTTTGAGGAGAAAGAAAGCATGAGCAAGGAAACTTAAAAAGAGAAATAACCATGTACTCCATGAACCAATAATAAACCAATAATAGCACTATATAAATG

mRNA sequence

ATGGATTATTCCAAAGCTCGTCTCAGTCTCGCCCTCTTCCTCTTGCTCTCGTTTGCCCTCGTTGCCTCGGCTCGGATCATACCCCATTCAGAAAACCAAGAAGCAGCTTATGTGATAAATGATTATCCTGATCCGGGAGCTAATCCAAGACATCGTCCACCACCCCCATCACGACATTCGTCCGAAGTTAGCGTTGTCAAGAGTCGCCTCATCAAGAACAAGCCCTAA

Coding sequence (CDS)

ATGGATTATTCCAAAGCTCGTCTCAGTCTCGCCCTCTTCCTCTTGCTCTCGTTTGCCCTCGTTGCCTCGGCTCGGATCATACCCCATTCAGAAAACCAAGAAGCAGCTTATGTGATAAATGATTATCCTGATCCGGGAGCTAATCCAAGACATCGTCCACCACCCCCATCACGACATTCGTCCGAAGTTAGCGTTGTCAAGAGTCGCCTCATCAAGAACAAGCCCTAA

Protein sequence

MDYSKARLSLALFLLLSFALVASARIIPHSENQEAAYVINDYPDPGANPRHRPPPPSRHSSEVSVVKSRLIKNKP
Homology
[Close]
BLAST of CsaV3_1G036290 vs. NCBI nr
Match: XP_011658636.1 (PREDICTED: protein PSY3 [Cucumis sativus] >KGN65818.1 hypothetical protein Csa_1G532260 [Cucumis sativus])

HSP 1 Score: 147.9 bits (372), Expect = 1.4e-32
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0 

Query: 1  MDYSKARLSLALFLLLSFALVASARIIPHSENQEAAYVINDYPDPGANPRHRPPPPSRHS 60
          MDYSKARLSLALFLLLSFALVASARIIPHSENQEAAYVINDYPDPGANPRHRPPPPSRHS
Sbjct: 1  MDYSKARLSLALFLLLSFALVASARIIPHSENQEAAYVINDYPDPGANPRHRPPPPSRHS 60

Query: 61 SEVSVVKSRLIKNKP 76
          SEVSVVKSRLIKNKP
Sbjct: 61 SEVSVVKSRLIKNKP 75

[Close]
BLAST of CsaV3_1G036290 vs. NCBI nr
Match: KGN65815.1 (hypothetical protein Csa_1G532230 [Cucumis sativus])

HSP 1 Score: 104.8 bits (260), Expect = 1.4e-19
Identity = 57/76 (75.00%), Postives = 59/76 (77.63%), Query Frame = 0 

Query: 1  MDYSKARLSLALFLLLSFALVASARIIPHSENQEAAYVINDYPDPGANPRHRP-PPPSRH 60
          MDYSKARLS  L LLLSF LV SARIIPHSENQE AY+INDYPDPGANPRH P PPP RH
Sbjct: 1  MDYSKARLS--LLLLLSFVLVTSARIIPHSENQEVAYMINDYPDPGANPRHNPFPPPPRH 60

Query: 61 SSEVSVVKSRLIKNKP 76
            E+SVVK   I   P
Sbjct: 61 LFEISVVKDGDITKNP 74

[Close]
BLAST of CsaV3_1G036290 vs. NCBI nr
Match: KGN65816.1 (hypothetical protein Csa_1G532240 [Cucumis sativus])

HSP 1 Score: 102.4 bits (254), Expect = 6.7e-19
Identity = 55/76 (72.37%), Postives = 59/76 (77.63%), Query Frame = 0 

Query: 1  MDYSKARLSLALFLLLSFALVASARIIPHSENQEAAYVINDYPDPGANPRHRP-PPPSRH 60
          MDYSKAR  LALFLLLSFAL  SARIIPHSENQEA Y++NDY DPGANPRH P PPP  H
Sbjct: 1  MDYSKAR--LALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDPFPPPLEH 60

Query: 61 SSEVSVVKSRLIKNKP 76
          S EV+ V+ R I   P
Sbjct: 61 SFEVNAVRGRHITKNP 74

[Close]
BLAST of CsaV3_1G036290 vs. NCBI nr
Match: KGN65817.1 (hypothetical protein Csa_1G532250 [Cucumis sativus])

HSP 1 Score: 79.0 bits (193), Expect = 8.0e-12
Identity = 48/75 (64.00%), Postives = 52/75 (69.33%), Query Frame = 0 

Query: 1  MDYSKARLSLALFLLLSFALVASARIIPHSENQEAAYVINDYPDPGANPRHRPPPPSRHS 60
          MDYSKA   LALFLL+SF LV SARIIPHSENQEAAY+I DYP+    PRH        S
Sbjct: 1  MDYSKAH--LALFLLVSFVLVTSARIIPHSENQEAAYMIIDYPE----PRHXXXXXXXPS 60

Query: 61 SEVSVVKSRLIKNKP 76
           EV+VVK R IK  P
Sbjct: 61 FEVNVVKDRHIKKNP 69

[Close]
BLAST of CsaV3_1G036290 vs. TAIR10
Match: AT2G29995.1 (unknown protein)

HSP 1 Score: 42.4 bits (98), Expect = 1.5e-04
Identity = 29/63 (46.03%), Postives = 39/63 (61.90%), Query Frame = 0 

Query: 4  SKARLSLALFLLLSFALVASARI-IPHSENQ-----EAAYVI--NDYPDPGANPRHRPPP 59
          S +R+ L LFL  +FAL++SARI +  SEN+     E + ++  NDY DP AN RH PP 
Sbjct: 5  SSSRIGLCLFLFFTFALLSSARISLSFSENEMTVVPERSLMVSTNDYSDPTANGRHDPPR 64

[Close]
BLAST of CsaV3_1G036290 vs. TrEMBL
Match: tr|A0A0A0LVJ6|A0A0A0LVJ6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532260 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 9.2e-33
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0 

Query: 1  MDYSKARLSLALFLLLSFALVASARIIPHSENQEAAYVINDYPDPGANPRHRPPPPSRHS 60
          MDYSKARLSLALFLLLSFALVASARIIPHSENQEAAYVINDYPDPGANPRHRPPPPSRHS
Sbjct: 1  MDYSKARLSLALFLLLSFALVASARIIPHSENQEAAYVINDYPDPGANPRHRPPPPSRHS 60

Query: 61 SEVSVVKSRLIKNKP 76
          SEVSVVKSRLIKNKP
Sbjct: 61 SEVSVVKSRLIKNKP 75

[Close]
BLAST of CsaV3_1G036290 vs. TrEMBL
Match: tr|A0A0A0LV67|A0A0A0LV67_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532230 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 9.0e-20
Identity = 57/76 (75.00%), Postives = 59/76 (77.63%), Query Frame = 0 

Query: 1  MDYSKARLSLALFLLLSFALVASARIIPHSENQEAAYVINDYPDPGANPRHRP-PPPSRH 60
          MDYSKARLS  L LLLSF LV SARIIPHSENQE AY+INDYPDPGANPRH P PPP RH
Sbjct: 1  MDYSKARLS--LLLLLSFVLVTSARIIPHSENQEVAYMINDYPDPGANPRHNPFPPPPRH 60

Query: 61 SSEVSVVKSRLIKNKP 76
            E+SVVK   I   P
Sbjct: 61 LFEISVVKDGDITKNP 74

[Close]
BLAST of CsaV3_1G036290 vs. TrEMBL
Match: tr|A0A0A0M0T8|A0A0A0M0T8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532240 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 4.4e-19
Identity = 55/76 (72.37%), Postives = 59/76 (77.63%), Query Frame = 0 

Query: 1  MDYSKARLSLALFLLLSFALVASARIIPHSENQEAAYVINDYPDPGANPRHRP-PPPSRH 60
          MDYSKAR  LALFLLLSFAL  SARIIPHSENQEA Y++NDY DPGANPRH P PPP  H
Sbjct: 1  MDYSKAR--LALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDPFPPPLEH 60

Query: 61 SSEVSVVKSRLIKNKP 76
          S EV+ V+ R I   P
Sbjct: 61 SFEVNAVRGRHITKNP 74

[Close]
BLAST of CsaV3_1G036290 vs. TrEMBL
Match: tr|A0A0A0LY98|A0A0A0LY98_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532250 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 5.3e-12
Identity = 48/75 (64.00%), Postives = 52/75 (69.33%), Query Frame = 0 

Query: 1  MDYSKARLSLALFLLLSFALVASARIIPHSENQEAAYVINDYPDPGANPRHRPPPPSRHS 60
          MDYSKA   LALFLL+SF LV SARIIPHSENQEAAY+I DYP+    PRH        S
Sbjct: 1  MDYSKAH--LALFLLVSFVLVTSARIIPHSENQEAAYMIIDYPE----PRHXXXXXXXPS 60

Query: 61 SEVSVVKSRLIKNKP 76
           EV+VVK R IK  P
Sbjct: 61 FEVNVVKDRHIKKNP 69

The following BLAST results are available for this feature:
BLAST of CsaV3_1G036290 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011658636.11.4e-32100.00PREDICTED: protein PSY3 [Cucumis sativus] >KGN65818.1 hypothetical protein Csa_1... [more]
KGN65815.11.4e-1975.00hypothetical protein Csa_1G532230 [Cucumis sativus][more]
KGN65816.16.7e-1972.37hypothetical protein Csa_1G532240 [Cucumis sativus][more]
KGN65817.18.0e-1264.00hypothetical protein Csa_1G532250 [Cucumis sativus][more]
BLAST of CsaV3_1G036290 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G29995.11.5e-0446.03unknown protein[more]
BLAST of CsaV3_1G036290 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G036290 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LVJ6|A0A0A0LVJ6_CUCSA9.2e-33100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532260 PE=4 SV=1[more]
tr|A0A0A0LV67|A0A0A0LV67_CUCSA9.0e-2075.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532230 PE=4 SV=1[more]
tr|A0A0A0M0T8|A0A0A0M0T8_CUCSA4.4e-1972.37Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532240 PE=4 SV=1[more]
tr|A0A0A0LY98|A0A0A0LY98_CUCSA5.3e-1264.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532250 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G036290.1CsaV3_1G036290.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 39..75

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G036290Wax gourdcucwgoB050
CsaV3_1G036290Silver-seed gourdcarcucB0177
CsaV3_1G036290Silver-seed gourdcarcucB0414
CsaV3_1G036290Silver-seed gourdcarcucB0556
CsaV3_1G036290Silver-seed gourdcarcucB0693
CsaV3_1G036290Silver-seed gourdcarcucB1040
CsaV3_1G036290Cucumber (Gy14) v2cgybcucB001
CsaV3_1G036290Cucumber (Gy14) v1cgycucB280
CsaV3_1G036290Cucurbita maxima (Rimu)cmacucB0250
CsaV3_1G036290Cucurbita maxima (Rimu)cmacucB0512
CsaV3_1G036290Cucurbita maxima (Rimu)cmacucB0821
CsaV3_1G036290Cucurbita maxima (Rimu)cmacucB0822
CsaV3_1G036290Cucurbita maxima (Rimu)cmacucB0963
CsaV3_1G036290Cucurbita moschata (Rifu)cmocucB0236
CsaV3_1G036290Cucurbita moschata (Rifu)cmocucB0262
CsaV3_1G036290Cucurbita moschata (Rifu)cmocucB0500
CsaV3_1G036290Cucurbita moschata (Rifu)cmocucB0804
CsaV3_1G036290Cucurbita moschata (Rifu)cmocucB0806
CsaV3_1G036290Cucurbita pepo (Zucchini)cpecucB0476
CsaV3_1G036290Cucurbita pepo (Zucchini)cpecucB0625
CsaV3_1G036290Cucurbita pepo (Zucchini)cpecucB0658
CsaV3_1G036290Cucurbita pepo (Zucchini)cpecucB1043
CsaV3_1G036290Wild cucumber (PI 183967)cpicucB000
CsaV3_1G036290Wild cucumber (PI 183967)cpicucB130
CsaV3_1G036290Bottle gourd (USVL1VR-Ls)cuclsiB031
CsaV3_1G036290Melon (DHL92) v3.5.1cucmeB025
CsaV3_1G036290Melon (DHL92) v3.5.1cucmeB067
CsaV3_1G036290Melon (DHL92) v3.6.1cucmedB023
CsaV3_1G036290Melon (DHL92) v3.6.1cucmedB063
CsaV3_1G036290Watermelon (Charleston Gray)cucwcgB005
CsaV3_1G036290Watermelon (Charleston Gray)cucwcgB051
CsaV3_1G036290Watermelon (Charleston Gray)cucwcgB066
CsaV3_1G036290Watermelon (97103) v1cucwmB006
CsaV3_1G036290Watermelon (97103) v1cucwmB026
CsaV3_1G036290Watermelon (97103) v1cucwmB073
CsaV3_1G036290Watermelon (97103) v2cucwmbB014
CsaV3_1G036290Watermelon (97103) v2cucwmbB042