CsaV3_1G034230 (gene) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.CATCAACCATATTTGGTTTTTAATTCTGTGTTTAAAAGCCCACAATTATAATCCTTTTTCCTCCACTCTTAATTCATATTTCCAATTCACAGAAATATGTCGAAGATTAATCTCGCAGCTCTCATCACCCTTCTTGCAGCACTTGTAACAATAATGTCCCTCATCATCATACCATCCTCTCAAGCTACCACTTCATGTGAACCCCCACATCGAGTAAGTTTATTTTTATTTCAAAAATCTCCCTTCAAACCTCATTAATATAATTCTTTTATTTCATTCTTCCCTATTAGATTGTTTCTCAAGAGCTCGTCGCTGATCAAAATAACGATGAACCATGTGAAGGACCAGGGAAAGAAGATTGTCTTATTCGAAGAACCTTACAGGCTCATACTGATTACGTTTATACTTGTGATAATCCAACCGAGCCATGAACTATACCGCTCATATTTTCTTTTCTTTTCTCTTTTGTTTGATCATTACTTACACTTTCATATAATAAAAATAAACAAAGATCATCCGTTTGACGTCAA ATGTCGAAGATTAATCTCGCAGCTCTCATCACCCTTCTTGCAGCACTTGTAACAATAATGTCCCTCATCATCATACCATCCTCTCAAGCTACCACTTCATGTGAACCCCCACATCGAATTGTTTCTCAAGAGCTCGTCGCTGATCAAAATAACGATGAACCATGTGAAGGACCAGGGAAAGAAGATTGTCTTATTCGAAGAACCTTACAGGCTCATACTGATTACGTTTATACTTGTGATAATCCAACCGAGCCATGA ATGTCGAAGATTAATCTCGCAGCTCTCATCACCCTTCTTGCAGCACTTGTAACAATAATGTCCCTCATCATCATACCATCCTCTCAAGCTACCACTTCATGTGAACCCCCACATCGAATTGTTTCTCAAGAGCTCGTCGCTGATCAAAATAACGATGAACCATGTGAAGGACCAGGGAAAGAAGATTGTCTTATTCGAAGAACCTTACAGGCTCATACTGATTACGTTTATACTTGTGATAATCCAACCGAGCCATGA MSKINLAALITLLAALVTIMSLIIIPSSQATTSCEPPHRIVSQELVADQNNDEPCEGPGKEDCLIRRTLQAHTDYVYTCDNPTEP
BLAST of CsaV3_1G034230 vs. NCBI nr
Match: KGN62431.1 (hypothetical protein Csa_2G354080 [Cucumis sativus]) HSP 1 Score: 92.8 bits (229), Expect = 6.0e-16 Identity = 50/85 (58.82%), Postives = 57/85 (67.06%), Query Frame = 0
BLAST of CsaV3_1G034230 vs. NCBI nr
Match: PON40330.1 (Phytosulfokine [Parasponia andersonii]) HSP 1 Score: 60.8 bits (146), Expect = 2.5e-06 Identity = 28/53 (52.83%), Postives = 35/53 (66.04%), Query Frame = 0
BLAST of CsaV3_1G034230 vs. NCBI nr
Match: POO00668.1 (Phytosulfokine [Trema orientalis]) HSP 1 Score: 58.9 bits (141), Expect = 9.6e-06 Identity = 27/53 (50.94%), Postives = 34/53 (64.15%), Query Frame = 0
BLAST of CsaV3_1G034230 vs. NCBI nr
Match: PLY69752.1 (hypothetical protein LSAT_5X117161 [Lactuca sativa]) HSP 1 Score: 58.5 bits (140), Expect = 1.3e-05 Identity = 27/58 (46.55%), Postives = 36/58 (62.07%), Query Frame = 0
BLAST of CsaV3_1G034230 vs. NCBI nr
Match: Q9FS10.1 (RecName: Full=Phytosulfokines; Contains: RecName: Full=Phytosulfokine-alpha; Short=PSK-alpha; Short=Phytosulfokine-a; Contains: RecName: Full=Phytosulfokine-beta; Short=PSK-beta; Short=Phytosulfokine-b; Flags: Precursor >BAB20706.1 preprophytosulfokine [Asparagus officinalis]) HSP 1 Score: 57.4 bits (137), Expect = 2.8e-05 Identity = 25/60 (41.67%), Postives = 38/60 (63.33%), Query Frame = 0
BLAST of CsaV3_1G034230 vs. TAIR10
Match: AT3G49780.1 (phytosulfokine 4 precursor) HSP 1 Score: 46.6 bits (109), Expect = 9.0e-06 Identity = 26/78 (33.33%), Postives = 40/78 (51.28%), Query Frame = 0
BLAST of CsaV3_1G034230 vs. TAIR10
Match: AT5G65870.1 (phytosulfokine 5 precursor) HSP 1 Score: 44.7 bits (104), Expect = 3.4e-05 Identity = 19/25 (76.00%), Postives = 22/25 (88.00%), Query Frame = 0
BLAST of CsaV3_1G034230 vs. TAIR10
Match: AT4G37720.1 (phytosulfokine 6 precursor) HSP 1 Score: 42.4 bits (98), Expect = 1.7e-04 Identity = 30/83 (36.14%), Postives = 43/83 (51.81%), Query Frame = 0
BLAST of CsaV3_1G034230 vs. TAIR10
Match: AT2G22860.1 (phytosulfokine 2 precursor) HSP 1 Score: 41.6 bits (96), Expect = 2.9e-04 Identity = 30/80 (37.50%), Postives = 40/80 (50.00%), Query Frame = 0
BLAST of CsaV3_1G034230 vs. Swiss-Prot
Match: sp|Q9FS10|PSK_ASPOF (Phytosulfokines OS=Asparagus officinalis OX=4686 GN=PSK PE=1 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 9.2e-08 Identity = 25/60 (41.67%), Postives = 38/60 (63.33%), Query Frame = 0
BLAST of CsaV3_1G034230 vs. Swiss-Prot
Match: sp|Q9M2Y0|PSK3_ARATH (Phytosulfokines 3 OS=Arabidopsis thaliana OX=3702 GN=PSK3 PE=2 SV=2) HSP 1 Score: 46.6 bits (109), Expect = 1.6e-04 Identity = 26/78 (33.33%), Postives = 40/78 (51.28%), Query Frame = 0
BLAST of CsaV3_1G034230 vs. Swiss-Prot
Match: sp|Q9AR88|PSK4_ORYSJ (Phytosulfokines 4 OS=Oryza sativa subsp. japonica OX=39947 GN=PSK4 PE=1 SV=1) HSP 1 Score: 44.7 bits (104), Expect = 6.2e-04 Identity = 17/23 (73.91%), Postives = 20/23 (86.96%), Query Frame = 0
BLAST of CsaV3_1G034230 vs. Swiss-Prot
Match: sp|Q9FEB4|PSK5_ARATH (Phytosulfokines 5 OS=Arabidopsis thaliana OX=3702 GN=PSK5 PE=2 SV=1) HSP 1 Score: 44.7 bits (104), Expect = 6.2e-04 Identity = 19/25 (76.00%), Postives = 22/25 (88.00%), Query Frame = 0
BLAST of CsaV3_1G034230 vs. TrEMBL
Match: tr|A0A0A0LR23|A0A0A0LR23_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G354080 PE=4 SV=1) HSP 1 Score: 92.8 bits (229), Expect = 4.0e-16 Identity = 50/85 (58.82%), Postives = 57/85 (67.06%), Query Frame = 0
BLAST of CsaV3_1G034230 vs. TrEMBL
Match: tr|A0A2P5AUV2|A0A2P5AUV2_PARAD (Phytosulfokine OS=Parasponia andersonii OX=3476 GN=PanWU01x14_298170 PE=4 SV=1) HSP 1 Score: 60.8 bits (146), Expect = 1.7e-06 Identity = 28/53 (52.83%), Postives = 35/53 (66.04%), Query Frame = 0
BLAST of CsaV3_1G034230 vs. TrEMBL
Match: tr|A0A2P5FS83|A0A2P5FS83_9ROSA (Phytosulfokine OS=Trema orientalis OX=63057 GN=TorRG33x02_032990 PE=4 SV=1) HSP 1 Score: 58.9 bits (141), Expect = 6.4e-06 Identity = 27/53 (50.94%), Postives = 34/53 (64.15%), Query Frame = 0
BLAST of CsaV3_1G034230 vs. TrEMBL
Match: tr|A0A2J6K3U5|A0A2J6K3U5_LACSA (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_5X117161 PE=4 SV=1) HSP 1 Score: 58.5 bits (140), Expect = 8.3e-06 Identity = 27/58 (46.55%), Postives = 36/58 (62.07%), Query Frame = 0
BLAST of CsaV3_1G034230 vs. TrEMBL
Match: tr|I1LEC9|I1LEC9_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100800220 PE=4 SV=1) HSP 1 Score: 55.8 bits (133), Expect = 5.4e-05 Identity = 24/53 (45.28%), Postives = 38/53 (71.70%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |