CsaV3_1G034190 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G034190
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 21429130 .. 21429609 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCACAACTCTCAACAACTCCACAAAACTCTTCATCCTCAAACTCTTCGATGCATATGGCACAGCAACATTACGAGCCGGCTTCATCCTTCACTGTGTAAGCCACCGTCATGACAGCAGAAGAAGGTTCTTCGCCTTCCATCGTGTTATTCGTTCTAGTCTGACGTTGCATTACGATTTGGGCTTGAACTTGAGTAAAGAGTTGCGTTGTACGGTGTTCGTAGAGTCGTTCCTCGATGTCTAGGGTTCTTGTTTGGGAAAGCCTAAGGCGGTAATGGTAGAAATGGAAAAGGAAGATGATTACAATGATACAAATGACGCTCACAAACAAGATTCCCATCTTTTGGTTGTTGGAAATCATAAACGACGGCGGAAGATAGCAATTATGATGTTGAAGGGTGGCGGTTGGAAGATGATGATCTTCTTAAGAGACGTGAATTTTGGAAGATTATATATGTTGGAAGAATTAAAGAGATAA

mRNA sequence

ATGGCCACAACTCTCAACAACTCCACAAAACTCTTCATCCTCAAACTCTTCGATGCATATGGCACAGCAACATTACGAGCCGGCTTCATCCTTCACTGTGTAAGCCACCGTCATGACAGCAGAAGAAGGTTCTTCGCCTTCCATCGTGTTATTCGTTCTAGTCTGACGTTGCATTACGATTTGGGCTTGAACTTGAGTAAAGAGTTGCGTTGTACGGGTTCTTGTTTGGGAAAGCCTAAGGCGGTAATGGTAGAAATGGAAAAGGAAGATGATTACAATGATACAAATGACGCTCACAAACAAGATTCCCATCTTTTGGTTGTTGGAAATCATAAACGACGGCGGAAGATAGCAATTATGATGTTGAAGGGTGGCGGTTGGAAGATGATGATCTTCTTAAGAGACGTGAATTTTGGAAGATTATATATGTTGGAAGAATTAAAGAGATAA

Coding sequence (CDS)

ATGGCCACAACTCTCAACAACTCCACAAAACTCTTCATCCTCAAACTCTTCGATGCATATGGCACAGCAACATTACGAGCCGGCTTCATCCTTCACTGTGTAAGCCACCGTCATGACAGCAGAAGAAGGTTCTTCGCCTTCCATCGTGTTATTCGTTCTAGTCTGACGTTGCATTACGATTTGGGCTTGAACTTGAGTAAAGAGTTGCGTTGTACGGGTTCTTGTTTGGGAAAGCCTAAGGCGGTAATGGTAGAAATGGAAAAGGAAGATGATTACAATGATACAAATGACGCTCACAAACAAGATTCCCATCTTTTGGTTGTTGGAAATCATAAACGACGGCGGAAGATAGCAATTATGATGTTGAAGGGTGGCGGTTGGAAGATGATGATCTTCTTAAGAGACGTGAATTTTGGAAGATTATATATGTTGGAAGAATTAAAGAGATAA

Protein sequence

MATTLNNSTKLFILKLFDAYGTATLRAGFILHCVSHRHDSRRRFFAFHRVIRSSLTLHYDLGLNLSKELRCTGSCLGKPKAVMVEMEKEDDYNDTNDAHKQDSHLLVVGNHKRRRKIAIMMLKGGGWKMMIFLRDVNFGRLYMLEELKR
Homology
[Close]
BLAST of CsaV3_1G034190 vs. NCBI nr
Match: KGN65720.1 (hypothetical protein Csa_1G515490 [Cucumis sativus])

HSP 1 Score: 261.2 bits (666), Expect = 2.2e-66
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0 

Query: 1   MATTLNNSTKLFILKLFDAYGTATLRAGFILHCVSHRHDSRRRFFAFHRVIRSSLTLHYD 60
           MATTLNNSTKLFILKLFDAYGTATLRAGFILHCVSHRHDSRRRFFAFHRVIRSSLTLHYD
Sbjct: 1   MATTLNNSTKLFILKLFDAYGTATLRAGFILHCVSHRHDSRRRFFAFHRVIRSSLTLHYD 60

Query: 61  LGLNLSKELRCTGSCLGKPKAVMVEMEKEDDYNDTNDAHKQDSHLLVVXXXXXXXXXXXX 120
           LGLNLSKELRCTGSCLGKPKAVMVEMEKEDDYNDTNDAHKQDSHLLVVXXXXXXXXXXXX
Sbjct: 61  LGLNLSKELRCTGSCLGKPKAVMVEMEKEDDYNDTNDAHKQDSHLLVVXXXXXXXXXXXX 120

Query: 121 XXXXXXWKMMIFLRDVNFGRLYMLEELKR 150
           XXXXXXWKMMIFLRDVNFGRLYMLEELKR
Sbjct: 121 XXXXXXWKMMIFLRDVNFGRLYMLEELKR 149

[Close]
BLAST of CsaV3_1G034190 vs. TrEMBL
Match: tr|A0A0A0LUV4|A0A0A0LUV4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G515490 PE=4 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 1.5e-66
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0 

Query: 1   MATTLNNSTKLFILKLFDAYGTATLRAGFILHCVSHRHDSRRRFFAFHRVIRSSLTLHYD 60
           MATTLNNSTKLFILKLFDAYGTATLRAGFILHCVSHRHDSRRRFFAFHRVIRSSLTLHYD
Sbjct: 1   MATTLNNSTKLFILKLFDAYGTATLRAGFILHCVSHRHDSRRRFFAFHRVIRSSLTLHYD 60

Query: 61  LGLNLSKELRCTGSCLGKPKAVMVEMEKEDDYNDTNDAHKQDSHLLVVXXXXXXXXXXXX 120
           LGLNLSKELRCTGSCLGKPKAVMVEMEKEDDYNDTNDAHKQDSHLLVVXXXXXXXXXXXX
Sbjct: 61  LGLNLSKELRCTGSCLGKPKAVMVEMEKEDDYNDTNDAHKQDSHLLVVXXXXXXXXXXXX 120

Query: 121 XXXXXXWKMMIFLRDVNFGRLYMLEELKR 150
           XXXXXXWKMMIFLRDVNFGRLYMLEELKR
Sbjct: 121 XXXXXXWKMMIFLRDVNFGRLYMLEELKR 149

The following BLAST results are available for this feature:
BLAST of CsaV3_1G034190 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN65720.12.2e-66100.00hypothetical protein Csa_1G515490 [Cucumis sativus][more]
BLAST of CsaV3_1G034190 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G034190 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G034190 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LUV4|A0A0A0LUV4_CUCSA1.5e-66100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G515490 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G034190.1CsaV3_1G034190.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 144..149

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G034190CsGy1G022550Cucumber (Gy14) v2cgybcucB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G034190Cucumber (Chinese Long) v3cuccucB024
CsaV3_1G034190Cucumber (Chinese Long) v3cuccucB029
CsaV3_1G034190Cucumber (Chinese Long) v3cuccucB049
CsaV3_1G034190Silver-seed gourdcarcucB0336
CsaV3_1G034190Silver-seed gourdcarcucB0364
CsaV3_1G034190Silver-seed gourdcarcucB0414
CsaV3_1G034190Silver-seed gourdcarcucB0472
CsaV3_1G034190Silver-seed gourdcarcucB1040
CsaV3_1G034190Cucumber (Gy14) v2cgybcucB105
CsaV3_1G034190Cucumber (Gy14) v2cgybcucB163
CsaV3_1G034190Cucumber (Gy14) v2cgybcucB253
CsaV3_1G034190Cucumber (Gy14) v1cgycucB055
CsaV3_1G034190Cucumber (Gy14) v1cgycucB157
CsaV3_1G034190Cucumber (Gy14) v1cgycucB280
CsaV3_1G034190Cucurbita maxima (Rimu)cmacucB0250
CsaV3_1G034190Cucurbita maxima (Rimu)cmacucB0512
CsaV3_1G034190Cucurbita maxima (Rimu)cmacucB0648
CsaV3_1G034190Cucurbita maxima (Rimu)cmacucB0692
CsaV3_1G034190Cucurbita moschata (Rifu)cmocucB0236
CsaV3_1G034190Cucurbita moschata (Rifu)cmocucB0262
CsaV3_1G034190Cucurbita moschata (Rifu)cmocucB0500
CsaV3_1G034190Cucurbita moschata (Rifu)cmocucB0633
CsaV3_1G034190Cucurbita moschata (Rifu)cmocucB0677
CsaV3_1G034190Cucurbita pepo (Zucchini)cpecucB0331
CsaV3_1G034190Cucurbita pepo (Zucchini)cpecucB0625
CsaV3_1G034190Cucurbita pepo (Zucchini)cpecucB0664
CsaV3_1G034190Cucurbita pepo (Zucchini)cpecucB0875
CsaV3_1G034190Wild cucumber (PI 183967)cpicucB000
CsaV3_1G034190Wild cucumber (PI 183967)cpicucB130
CsaV3_1G034190Wild cucumber (PI 183967)cpicucB201
CsaV3_1G034190Wild cucumber (PI 183967)cpicucB314
CsaV3_1G034190Bottle gourd (USVL1VR-Ls)cuclsiB018
CsaV3_1G034190Bottle gourd (USVL1VR-Ls)cuclsiB001
CsaV3_1G034190Bottle gourd (USVL1VR-Ls)cuclsiB031
CsaV3_1G034190Melon (DHL92) v3.5.1cucmeB007
CsaV3_1G034190Melon (DHL92) v3.5.1cucmeB025
CsaV3_1G034190Melon (DHL92) v3.5.1cucmeB067
CsaV3_1G034190Melon (DHL92) v3.5.1cucmeB090
CsaV3_1G034190Melon (DHL92) v3.6.1cucmedB007
CsaV3_1G034190Melon (DHL92) v3.6.1cucmedB023
CsaV3_1G034190Melon (DHL92) v3.6.1cucmedB063
CsaV3_1G034190Watermelon (Charleston Gray)cucwcgB005
CsaV3_1G034190Watermelon (Charleston Gray)cucwcgB034
CsaV3_1G034190Watermelon (Charleston Gray)cucwcgB051
CsaV3_1G034190Watermelon (Charleston Gray)cucwcgB065
CsaV3_1G034190Watermelon (97103) v1cucwmB006
CsaV3_1G034190Watermelon (97103) v1cucwmB026
CsaV3_1G034190Watermelon (97103) v1cucwmB072
CsaV3_1G034190Watermelon (97103) v1cucwmB079
CsaV3_1G034190Watermelon (97103) v2cucwmbB014
CsaV3_1G034190Watermelon (97103) v2cucwmbB026
CsaV3_1G034190Watermelon (97103) v2cucwmbB042
CsaV3_1G034190Wax gourdcucwgoB021
CsaV3_1G034190Wax gourdcucwgoB050