CsaV3_1G034180 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G034180
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionRING-H2 finger protein ATL66-like
Locationchr1 : 21422049 .. 21428595 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACCTTCTTTACACATTTTCTTCAACTGCAACAGAAGTTCAATTAGTTAATAAGCTGAACGAGGTAGTAGAGTCAGAGAGTAACAACAATTTCAAATTTCAATATTTTTCTTATAGATCAAAAGACCAAAAAGCAGGTAATATTAAAGTTCAAGAACCTACTAGTTCACTTAAGCTTTAAGCTTTCAAGGCCTGTTTTACAGAACAGCATAATCATTTTGTAGCTTTTCCAAGTGCAATGGGAGTTTCAAATCATTTTGTAACTTTAACAGTATTATATCTAAATGATTGAAAGATACCGGTTGTAATGCCCCAAGATTTGGAATCCCCAACATCCCCACAAACCAACACAAATCATTTCAAAGTGTTTTGTCTTCACTTACATGCTTCTTTGAAAAATTCTCATAAATTCACCCAACAAAGAATTGTGTTAAGCTAAACACACATAATTGTACAGTTTCTAGGGGTAAGCCATTGAAAAGAAAGTTACACTCCGTTGGCAGAGGTAAGAACTATACCTGCATTCCTTTGATATTTATCTAATTTGGATGTGACGTTGGTTTATTTATGTAAACTCTGAACTTTAAACTTAGGTGTTAGATAATTCAAAACAGAAACTACCGCAACAAATAGAAAAATAGAGGTAACTATATAATCTACTAATTAAAAATCCCGTTCCTAATTATAAACATTCTCAAAATGAAAATTTCAGCATTCATTCTCAAAAGCCATAAACTGGCAGACTCCACAACTTGAGTCTGAAGCAAGAGATACTAACCGTATTTTCAAATTTGTGAGAAGAAATTGCTCCTACAGAATCAAAAGCAACGCCATAAAATCAGTAAAGAAAGATAGAAATTGAAACCAATTTCGCAGAAAAGGCGAGAAAAACCAAACCATTTTTAACAACAAAATAAGCATCCTCAGCAGCGGCTCGAGTAGCAGCGACCTGAAAAGTAGAACCAAACGAACAGAACCCATTTCAAATTTAGCCGTAATAAACACTCACAAAAAAAAAAAAAAAATCAAGAATATATAAAACAAGAAACACATACGGATCCGATCTTCAAGAAGCCATCGACGGTGAGATTGAGAAAGGGATACCCCGTATCGATGACGACATCGATCTTGGGGGTCGATGAGGAGCCGACGAAGCCGGTGGGAGGCATGGTGTTGTTCTAAAGATTGTGTGAGAGAAGGGATTGAAAGTGGAGGATGGTGGTAGAAATGGGCCGTTCCTGATTTTTGCCGCTACAAATTGTTCAAGATTTTTGGAGGTACTTAAAATGCGAAATGAATTTGGAATTTAGTGGCTTTTTGGATCTTTGATTTAATTGGATTCTTAAAGAAGAAGAGACGAGTTCAACTTTTTTTGTTTGCGTTGCCCGAGGCCAGTATTTGGCGTTGGTGTTGCCCTCCATCCATTTTCATTTTTCAACCGTTGATTTCCTTTCTCTTTTAAATTACAATAGCTAGAGGTCTTAGAAATAAGACAATGTCCAAATCAAATTTAGTTTAATTATAATGGGATTCTACTCTCTAAGACAACAAGTATAATCAATTGGAGAACACTCTTCAAATTAGTATTGATAGAATTTATGTTTCACATAATATAAATATGACCTATACATCCATTTTAATGTGTGCATGCAACTTAGAGTTGGAAGTAAGAATACTTAATTCTTAATATTTTGACATAATAAGTGATAATTGTATACATTAATTAGGCATAATTTTGGAATAAGTTTTGAATATAGGAGTTTGGTTGGAAGGTTTTATTTAAGAGGTAGTTGGAAAAAATGGTTTTATTTTAATGTTTGCATCTACCATTATATTTTTTATTAAAAAAGTATTTCTTTGTATCTTAGTTTTATTTTATCTATCACACCCTTAGTCATTAGCCATGGGCATTGGAGATAGTTAAAAAAAAACTTATGGGGGTATTTTATGTCATTGTTAAAAATAATTAAATCCTATTATAATATAGGACATTGTATTGAATAAAAAAAAAATTAGATTCTATCAAAACTTAGAATTATAATTGTAAATATTTTGAATAGTTTTGAAAAAATATAAATTTATTCATTAATATTGTTTTTGTTCATTTCTAAACACTACTGTTTAAACATGGTCATTCCTATTGGTGTTCTTATTGAATTAATATATACAAAAAATTGATATTATCTATAAATTAATTTCAAAATTTTCAAAATACATCCAACATTAAACCTGCACTGTAACCATAAGGGCAAAGAGTTTTGGTCGCTGTAAAAGGTAAAATAAAATAAACCACTTAAGAAACAAATTATATTTGAAATCAAATTCAAACTATATTTTGAGACTAAACAAAATCTTTCTTCAAACTTGGAAGATACGAAAACTCAATTAAAATTTTTGTTTAACTTTGGAAAACAAAAACACTAAATATGACTGACTTCAAAGCCTTAGGCAAAGGGGAGACAATTAAAAAGCAAGATTCCTTGCTTCAATGGTTGTTTGTTTCCCTTCGTGCTTTAAAGTACAATACAAACATAATATCAAAATCACAAGCTTCACAAATATATTCCTTTCTTAACTCAAGTCTATGGATTTCATTCACACCTGTTCTAAACACGAATAATGGAAAAGGATATCTTCAAAATGTATTTGTTGAAGAAAGAGGGAGTAAAATCAATAGATGAATAATCAACTTCTAATTGAAGCAAAGCATACTTGTGGATGTAAAAATGTGATACAAAGCACTATAACATGTCTAGTCACAGATTTCAAACGACTGTCATCTTTCCTAGGGTATTATCATAAGATACAATCACGGTTGGACTATATGATGATAATTAAAAGTTGCATATTTGATGGTAATTATTTACGATGACATTTTGTAACTGACAGGCAATATTGTGTACTGTTGTACCTATATGATGACAGTTGTTCTCTATGATGCTCGATTGACCTGTTTAAGAATCGACATCATACATGTGTCTATGTCACCATACACTAGTGAAGAAAACTCTTTCTTAAAGGGAGTTCAAAAACATGTTTGAAGGTTGTCTTAAATTTGGGGAGCATAAATTCTTCATTAGATCAGTAAGCTTTTTGTGAGTCTAAATAATATGTACTAGCATACAAATATTCCTTTGGAATTGCTTAAATCTGTAAGTGAAATTTTTTTCATCGAGCACTCTAATCCTTAGATGTAGGTGTAGTTTGAGTGAACTGGATTACCATTTTATATGTCCATTCTTCTATACTTACTAATTTTACGAACACTCCTAACTCATACTCATGCATGTGACATTATTATGTTTTATTTTTGTGGTTTACTGCTTTATATTCACAAATTTTGCATTAATTATATAATATTGTAAAATAATACTTTGTACATAATTTAGAGCCTAAAACATGTACACAAATTAATTAATAATGATTTATATTTAACATATTTTTGTAGATTTATTAAAGGTGTAGGGGACACAAATTTTGTATTAATTTTGAAGTTTTAGATTACATTGGTTCTGGGGTAGTGGCTATGCCTCTCCTCCAAAATTCTTGCTTATGACAATTATTTATGCGAAATAGTTTTTATTCCAAGCATTATATGTCGACACTTGTTTGGGATCATTATTTTTCAAGTTACAACACATTTTTTTTACATACATGATTCAACTTACCCCCGTATTAATGTTTGAAAAGTTTTTTTATTGACAATAAAAAATGTACCTTATATTATTAGTAAATGTTTTAAAATAATTCAAAAGATAAATTAATTGCAATACTATGTCCTAATCTAATCAAACTAACTTATAAATGGACTTGATCGATCTCATGGTCCACGAGTTCTTCAACTACTTGCAAACTTGGTGAGCTCCTTCAAACGACGGGCGGAGAGCTTTTGCAAGAGAGGAAAAATCGTGAAGATCATTTGCAAGAGGGGAAAATGTCGTCAAAGAGCATTTACGAGAGAGAAAGATAGCGGCGGCGTGGGATGAAGTAAGAGTTTTTTTCGGTTGTGGTTCGCCAGAGGGATGAAGGCGTCGAGTTTTTTTAAATCAGAAAGCATACGAATGAAGGAAAACATTGATTTTTTATTAGGGTAATTTTTAATGACACATAATTTATGTCGTTAATTAACGACGCAAAAATTTTGTCAAGAAAATTCAATTTGTGTCAAGAAAATTGTCACAAAAAATTGTACTTTTATTTCTAACGGCACATTTTGTTCCCCCGCCCTTTTTTTCTTGATTTCAAGTGTCATTAAAACGCATATTTCTAAATAAATTTATTCGACGACTGTGGCTAGATTGGTTGGTTCAACGGTGAAGCCTTGTTGTGGCGGCAACGACGGTAGTGGCTAGAGTGTGGAATCGATGACGACGAGTGGCAAAAAATTGGGAGGCAAGTTTTTCGCAACGACGCGGTAGCCCACTTTGTTTGATGAGATTTTTATTTTTGCGTTTTTGGTAGAGAGAAAAAAAATTGCATTAAGGCTTGGCAGAGTTTTTGATTGAGAGAAAAGTTGGGATTTTTATTTATTTTTAATTGGGTGAGGGGGGAATTAAATTTTTTTAAAGTTTGAGGTTTTTTCATTTGGAAATTTGTTTAATGACACAATTTGTTAATGACCCAAAAATTGTGCCAAAACAAATTAAATTATGTTGATAGAATTGTGTCGAAAAGTAATCCATATTTTTATTTTCAATGTGCCAAAACAAATTAAATTACGTCGATAGAATTGTGTCGAGAAATAATATTATTTTTATTTCCAACGACATAATTTACCTCACCCCACCCTACCTATTTTCTTATTTTCAACGACACAGTGTCTTGATTAGTTGTGTCACTCAAATCCATTTTTCGAGTATTGCAAAGAGATAAAGAAGAAGAGATTGTGGTACATGTTCTTCCTTAACGTTAGAAAATCATGCAATTGAGGATAAAATTTTTGTAATTTTTAAAAATTAGACAATTCTCCACATTTAAAAAACTTTTATCCTATAAGTATTGAAAAATTATGCATTTTTTTCCATTTTACTTAACAAAATTTATTAGAATTGTGAAGTATTTCAGGTCATGTTTTTTTGTGGCAGTGCCAAATAAGCGAGAAAATAAAAAAAATATCAATTTAACTATATACACCTAAAGTAATAAAAGGGTTTGTTAATCCAATTTGGTGAATTTCACCTACCGATAAGAAATATTATTAAGATTCAATAAAATAATCAACTTGTCAATAAAGTAATCAACTTGTCTATAAAGTAATCAAATTGTCTATAAACCGAGGCTCCTTATATTTGAATCTTAGACTCCGTCTGAGAATTTGTTAACTATTTCAATCTTCGATACGAACTAAAAATTATCTTTAATAATACATCATAATAAAGATGGTAATTGAAATACCAAATGTAGAGTTCCCATATTTAAGAGCTTCAATAAAAAAAAATTATTTAAAAATATAGATAAAAGATTTGTGTGAAAAAGAAAAATATTGTCTTTTTAACATAAATAAATCTATATCTTTTCTAAAGAACCAAACGAACATTAAATAATAATAATAAAAAGAATTTAATTTAGGTCAACCACATTTTCAACCATGGCTTAAATTGAGATTTAATTTCTAAATTATTTCCAAGCAATTATTTTCTATGAAAATATGCAATGCAACTTATTTTCATTGAATCGCTTTGTCTTCAAACTATAAAAAAGAAGAAAAAAATCGCTCACACACATATATATACAAAAATGAAATAAAATATTTATCATCAAATAAAAGATTTGGTAAATCAAAATATAATAATAAAAAATTTAAATGATTAAAGATTTTTCTGAAGGAATTAATTTTTTTAAAAACAAAACCCTTATAAATAAAATCCATAAACTTCCCCTCCTTATTCTCTGGTGAACTCTTTTATCTTCTAAAAGAAATATATCATGTCACCCCCGCCGTATATTGCCGCTTCTCCAATGCCAACGAACGGGTTCGAAGCCATTTTTGATGACTTTGAGCTTTTGGCAGCCATATGTTTTGCCATTATAGTCTACTTCCTCTCCTTCACTTTCTACTTCAAAACAGGAAATAATGAATCAGAATTCGACACTGGGACGGTCGAAGATCGATTGCCTGTGTTCCGAGAGCGGGAGATTGTACAGATTGAGACAATGGTTTTCAGTTATTACAGGGAAGCTAAGGGAAGTGAGAATGATGATGATTACGAATGTGTGATTTGCTTGAATAAATTTGAAGATGGCCAAAAATGCCAATGGATGAAAAAGTGTGGTCATATATTTCATTGTAGCTGCATCGATCGGTGGCTCAGGACGGAGCGGGAATGTCCGCTTTGCCGAAGCTGCGTTTGCGTCGTCGTCAATCCATAATATATTTTCTTTCATTTTTTTAGAAGATTAATTATCAGACTTTGGGATTTCATTTGGTCACTTTTACTTGAAAAGTTGAAGAATAACAATATATACTAATTAGTTCATTGTACATCTAGTTTGTTCATTGAAGATCACAACAAATTATAGTTTTGAGAAGATTTGATTTTTGAAAA

mRNA sequence

ATGCACCTTCTTTACACATTTTCTTCAACTGCAACAGAAGTTCAATTAGTTAATAAGCTGAACGAGGTAGTAGAGTCAGAGAGTAACAACAATTTCAAATTTCAATATTTTTCTTATAGATCAAAAGACCAAAAAGCAGGAAATAATGAATCAGAATTCGACACTGGGACGGTCGAAGATCGATTGCCTGTGTTCCGAGAGCGGGAGATTGTACAGATTGAGACAATGGTTTTCAGTTATTACAGGGAAGCTAAGGGAAGTGAGAATGATGATGATTACGAATGTGTGATTTGCTTGAATAAATTTGAAGATGGCCAAAAATGCCAATGGATGAAAAAGTGTGGTCATATATTTCATTGTAGCTGCATCGATCGGTGGCTCAGGACGGAGCGGGAATGTCCGCTTTGCCGAAGCTGCGTTTGCGTCGTCGTCAATCCATAA

Coding sequence (CDS)

ATGCACCTTCTTTACACATTTTCTTCAACTGCAACAGAAGTTCAATTAGTTAATAAGCTGAACGAGGTAGTAGAGTCAGAGAGTAACAACAATTTCAAATTTCAATATTTTTCTTATAGATCAAAAGACCAAAAAGCAGGAAATAATGAATCAGAATTCGACACTGGGACGGTCGAAGATCGATTGCCTGTGTTCCGAGAGCGGGAGATTGTACAGATTGAGACAATGGTTTTCAGTTATTACAGGGAAGCTAAGGGAAGTGAGAATGATGATGATTACGAATGTGTGATTTGCTTGAATAAATTTGAAGATGGCCAAAAATGCCAATGGATGAAAAAGTGTGGTCATATATTTCATTGTAGCTGCATCGATCGGTGGCTCAGGACGGAGCGGGAATGTCCGCTTTGCCGAAGCTGCGTTTGCGTCGTCGTCAATCCATAA

Protein sequence

MHLLYTFSSTATEVQLVNKLNEVVESESNNNFKFQYFSYRSKDQKAGNNESEFDTGTVEDRLPVFREREIVQIETMVFSYYREAKGSENDDDYECVICLNKFEDGQKCQWMKKCGHIFHCSCIDRWLRTERECPLCRSCVCVVVNP
Homology
[Close]
BLAST of CsaV3_1G034180 vs. NCBI nr
Match: XP_004151032.1 (PREDICTED: RING-H2 finger protein ATL66 [Cucumis sativus] >KGN65719.1 hypothetical protein Csa_1G515480 [Cucumis sativus])

HSP 1 Score: 224.9 bits (572), Expect = 1.7e-55
Identity = 101/102 (99.02%), Postives = 101/102 (99.02%), Query Frame = 0 

Query: 45  KAGNNESEFDTGTVEDRLPVFREREIVQIETMVFSYYREAKGSENDDDYECVICLNKFED 104
           K GNNESEFDTGTVEDRLPVFREREIVQIETMVFSYYREAKGSENDDDYECVICLNKFED
Sbjct: 46  KTGNNESEFDTGTVEDRLPVFREREIVQIETMVFSYYREAKGSENDDDYECVICLNKFED 105

Query: 105 GQKCQWMKKCGHIFHCSCIDRWLRTERECPLCRSCVCVVVNP 147
           GQKCQWMKKCGHIFHCSCIDRWLRTERECPLCRSCVCVVVNP
Sbjct: 106 GQKCQWMKKCGHIFHCSCIDRWLRTERECPLCRSCVCVVVNP 147

[Close]
BLAST of CsaV3_1G034180 vs. NCBI nr
Match: XP_008457571.1 (PREDICTED: RING-H2 finger protein ATL66-like [Cucumis melo])

HSP 1 Score: 146.0 bits (367), Expect = 1.0e-31
Identity = 77/115 (66.96%), Postives = 83/115 (72.17%), Query Frame = 0 

Query: 45  KAGNNE---SEFDTGTVEDRLPVFRER------EIVQIETMVFSYYREAK----GSENDD 104
           K GNN+    + D GTVE+ LP FRER      EIVQIE MVFS YREAK          
Sbjct: 46  KTGNNDYQSDQSDVGTVEE-LPAFRERVVRDQQEIVQIEAMVFS-YREAKRXXXXXXXXX 105

Query: 105 DYECVICLNKFEDGQKCQWMKKCGHIFHCSCIDRWLRTERECPLCRSCVCVVVNP 147
             ECVICLNKFED QKC+WMKKCGHIFH SCIDRWL+TERECPLCR+CVCVVV P
Sbjct: 106 XXECVICLNKFEDAQKCRWMKKCGHIFHRSCIDRWLKTERECPLCRTCVCVVVKP 158

[Close]
BLAST of CsaV3_1G034180 vs. NCBI nr
Match: XP_022998666.1 (RING-H2 finger protein ATL56-like [Cucurbita maxima])

HSP 1 Score: 126.7 bits (317), Expect = 6.4e-26
Identity = 62/98 (63.27%), Postives = 74/98 (75.51%), Query Frame = 0 

Query: 50  ESEFDTGT-VEDRLPVFREREIVQIETMVFSYYREAKGSENDDDYECVICLNKFEDGQKC 109
           +SE ++G+     LPV RE EIV+IE  VFS YREA G  +D   EC ICL++FEDGQKC
Sbjct: 50  KSELESGSEPAGALPVVREPEIVRIEASVFS-YREADGGHDD---ECAICLDEFEDGQKC 109

Query: 110 QWMKKCGHIFHCSCIDRWLRTERECPLCRSCVCVVVNP 147
           + M KCGHIFH  CIDRWL+ +R CPLCRSCVCVVV+P
Sbjct: 110 RKMNKCGHIFHRRCIDRWLKVDRHCPLCRSCVCVVVHP 143

[Close]
BLAST of CsaV3_1G034180 vs. NCBI nr
Match: XP_023524567.1 (RING-H2 finger protein ATL56-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 123.2 bits (308), Expect = 7.1e-25
Identity = 60/98 (61.22%), Postives = 73/98 (74.49%), Query Frame = 0 

Query: 50  ESEFDTGT-VEDRLPVFREREIVQIETMVFSYYREAKGSENDDDYECVICLNKFEDGQKC 109
           +SE ++G+     LPV RE EIV+IE  VFS Y+EA G  +D   EC ICL++FED QKC
Sbjct: 50  KSELESGSDPAGALPVVREPEIVRIEASVFS-YKEADGGHDD---ECAICLDEFEDAQKC 109

Query: 110 QWMKKCGHIFHCSCIDRWLRTERECPLCRSCVCVVVNP 147
           + M KCGHIFH  CIDRWL+ +R CPLCRSCVCVVV+P
Sbjct: 110 RKMNKCGHIFHRRCIDRWLKVDRHCPLCRSCVCVVVHP 143

[Close]
BLAST of CsaV3_1G034180 vs. NCBI nr
Match: XP_023524566.1 (RING-H2 finger protein ATL66-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 111.7 bits (278), Expect = 2.1e-21
Identity = 51/77 (66.23%), Postives = 56/77 (72.73%), Query Frame = 0 

Query: 70  IVQIETMVFSYYREAKGSENDDDYECVICLNKFEDGQKCQWMKKCGHIFHCSCIDRWLRT 129
           IV+IE  VF  YREA G       EC ICL+ FEDGQKC+ M KCGHIFHC CIDRWL+ 
Sbjct: 71  IVRIEASVFC-YREADGGHGG---ECAICLDGFEDGQKCRMMNKCGHIFHCRCIDRWLKV 130

Query: 130 ERECPLCRSCVCVVVNP 147
           E  CPLCRSCVC VV+P
Sbjct: 131 ECHCPLCRSCVCAVVHP 143

[Close]
BLAST of CsaV3_1G034180 vs. TAIR10
Match: AT5G10380.1 (RING/U-box superfamily protein)

HSP 1 Score: 70.1 bits (170), Expect = 1.3e-12
Identity = 27/62 (43.55%), Postives = 39/62 (62.90%), Query Frame = 0 

Query: 85  KGSENDDDYECVICLNKFEDGQKCQWMKKCGHIFHCSCIDRWLRTERECPLCRSCVCVVV 144
           KG    D  EC +CLN+FE+ +  + + KC H FH +CID WL + + CPLCR+ V ++ 
Sbjct: 125 KGEGIIDGTECSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPVLLIT 184

Query: 145 NP 147
            P
Sbjct: 185 EP 186

[Close]
BLAST of CsaV3_1G034180 vs. TAIR10
Match: AT5G17600.1 (RING/U-box superfamily protein)

HSP 1 Score: 68.2 bits (165), Expect = 4.9e-12
Identity = 29/75 (38.67%), Postives = 44/75 (58.67%), Query Frame = 0 

Query: 74  ETMV--FSYYREAKGSENDDDYECVICLNKFEDGQKCQWMKKCGHIFHCSCIDRWLRTER 133
           E+M+   + Y+   G    D  +C +CL++FE+ +  + + KC H FH  CID WL++  
Sbjct: 119 ESMIKSITVYKYKSGDGFVDGSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHS 178

Query: 134 ECPLCRSCVCVVVNP 147
            CPLCR+ V  V NP
Sbjct: 179 NCPLCRAFVTGVNNP 193

[Close]
BLAST of CsaV3_1G034180 vs. TAIR10
Match: AT4G09120.1 (RING/U-box superfamily protein)

HSP 1 Score: 67.8 bits (164), Expect = 6.4e-12
Identity = 31/73 (42.47%), Postives = 43/73 (58.90%), Query Frame = 0 

Query: 67  EREIVQIETMVFSYYREAKGSE-NDDDYECVICLNKFEDGQKCQWMKKCGHIFHCSCIDR 126
           E+E+  IE+     Y E KG +      EC ICL++FED +  +WM  C H FH +CID 
Sbjct: 96  EKEV--IESFPTFLYSEVKGLKIGKGGVECAICLSEFEDQETLRWMPPCSHTFHANCIDV 155

Query: 127 WLRTERECPLCRS 139
           WL +   CP+CR+
Sbjct: 156 WLSSWSTCPVCRA 166

[Close]
BLAST of CsaV3_1G034180 vs. TAIR10
Match: AT2G27940.1 (RING/U-box superfamily protein)

HSP 1 Score: 66.6 bits (161), Expect = 1.4e-11
Identity = 29/62 (46.77%), Postives = 40/62 (64.52%), Query Frame = 0 

Query: 77  VFSYYREAKGSENDDDYECVICLNKFEDGQKCQWMKKCGHIFHCSCIDRWLRTERECPLC 136
           V+ Y + AK   N+D   CVICL+ FE+G+  + +  CGH+FH  C+D WL +   CPLC
Sbjct: 126 VYRYTKAAK-QRNED---CVICLSDFEEGETVKVIPHCGHVFHVDCVDTWLSSYVTCPLC 183

Query: 137 RS 139
           RS
Sbjct: 186 RS 183

[Close]
BLAST of CsaV3_1G034180 vs. TAIR10
Match: AT4G09130.1 (RING/U-box superfamily protein)

HSP 1 Score: 66.6 bits (161), Expect = 1.4e-11
Identity = 28/67 (41.79%), Postives = 38/67 (56.72%), Query Frame = 0 

Query: 73  IETMVFSYYREAKGSE-NDDDYECVICLNKFEDGQKCQWMKKCGHIFHCSCIDRWLRTER 132
           IE+     Y E K  +  +   EC ICL +FED +  +WM  C H FH +CID WL +  
Sbjct: 97  IESFPAFLYSEVKAFKIGNGGVECAICLCEFEDEEPLRWMPPCSHTFHANCIDEWLSSRS 156

Query: 133 ECPLCRS 139
            CP+CR+
Sbjct: 157 TCPVCRA 163

[Close]
BLAST of CsaV3_1G034180 vs. Swiss-Prot
Match: sp|Q9LX93|ATL55_ARATH (E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.3e-11
Identity = 27/62 (43.55%), Postives = 39/62 (62.90%), Query Frame = 0 

Query: 85  KGSENDDDYECVICLNKFEDGQKCQWMKKCGHIFHCSCIDRWLRTERECPLCRSCVCVVV 144
           KG    D  EC +CLN+FE+ +  + + KC H FH +CID WL + + CPLCR+ V ++ 
Sbjct: 125 KGEGIIDGTECSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPVLLIT 184

Query: 145 NP 147
            P
Sbjct: 185 EP 186

[Close]
BLAST of CsaV3_1G034180 vs. Swiss-Prot
Match: sp|Q9LF64|ATL52_ARATH (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 8.9e-11
Identity = 29/75 (38.67%), Postives = 44/75 (58.67%), Query Frame = 0 

Query: 74  ETMV--FSYYREAKGSENDDDYECVICLNKFEDGQKCQWMKKCGHIFHCSCIDRWLRTER 133
           E+M+   + Y+   G    D  +C +CL++FE+ +  + + KC H FH  CID WL++  
Sbjct: 119 ESMIKSITVYKYKSGDGFVDGSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHS 178

Query: 134 ECPLCRSCVCVVVNP 147
            CPLCR+ V  V NP
Sbjct: 179 NCPLCRAFVTGVNNP 193

[Close]
BLAST of CsaV3_1G034180 vs. Swiss-Prot
Match: sp|Q9M0R5|ATL36_ARATH (Putative RING-H2 finger protein ATL36 OS=Arabidopsis thaliana OX=3702 GN=ATL36 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.2e-10
Identity = 31/73 (42.47%), Postives = 43/73 (58.90%), Query Frame = 0 

Query: 67  EREIVQIETMVFSYYREAKGSE-NDDDYECVICLNKFEDGQKCQWMKKCGHIFHCSCIDR 126
           E+E+  IE+     Y E KG +      EC ICL++FED +  +WM  C H FH +CID 
Sbjct: 96  EKEV--IESFPTFLYSEVKGLKIGKGGVECAICLSEFEDQETLRWMPPCSHTFHANCIDV 155

Query: 127 WLRTERECPLCRS 139
           WL +   CP+CR+
Sbjct: 156 WLSSWSTCPVCRA 166

[Close]
BLAST of CsaV3_1G034180 vs. Swiss-Prot
Match: sp|Q9M0R6|ATL35_ARATH (Putative RING-H2 finger protein ATL35 OS=Arabidopsis thaliana OX=3702 GN=ATL35 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.6e-10
Identity = 30/73 (41.10%), Postives = 42/73 (57.53%), Query Frame = 0 

Query: 67  EREIVQIETMVFSYYREAKGSE-NDDDYECVICLNKFEDGQKCQWMKKCGHIFHCSCIDR 126
           E+E+V  E+     Y E KG +      EC ICL++F D +  +WM  C H FH +CID 
Sbjct: 96  EKELV--ESFPIFLYSEVKGLKIGKGGVECAICLSEFVDKETLRWMPPCSHTFHANCIDV 155

Query: 127 WLRTERECPLCRS 139
           WL ++  CP CR+
Sbjct: 156 WLSSQSTCPACRA 166

[Close]
BLAST of CsaV3_1G034180 vs. Swiss-Prot
Match: sp|Q9M0R4|ATL37_ARATH (Putative RING-H2 finger protein ATL37 OS=Arabidopsis thaliana OX=3702 GN=ATL37 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.6e-10
Identity = 28/67 (41.79%), Postives = 38/67 (56.72%), Query Frame = 0 

Query: 73  IETMVFSYYREAKGSE-NDDDYECVICLNKFEDGQKCQWMKKCGHIFHCSCIDRWLRTER 132
           IE+     Y E K  +  +   EC ICL +FED +  +WM  C H FH +CID WL +  
Sbjct: 97  IESFPAFLYSEVKAFKIGNGGVECAICLCEFEDEEPLRWMPPCSHTFHANCIDEWLSSRS 156

Query: 133 ECPLCRS 139
            CP+CR+
Sbjct: 157 TCPVCRA 163

[Close]
BLAST of CsaV3_1G034180 vs. TrEMBL
Match: tr|A0A0A0LXE1|A0A0A0LXE1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G515480 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 1.1e-55
Identity = 101/102 (99.02%), Postives = 101/102 (99.02%), Query Frame = 0 

Query: 45  KAGNNESEFDTGTVEDRLPVFREREIVQIETMVFSYYREAKGSENDDDYECVICLNKFED 104
           K GNNESEFDTGTVEDRLPVFREREIVQIETMVFSYYREAKGSENDDDYECVICLNKFED
Sbjct: 46  KTGNNESEFDTGTVEDRLPVFREREIVQIETMVFSYYREAKGSENDDDYECVICLNKFED 105

Query: 105 GQKCQWMKKCGHIFHCSCIDRWLRTERECPLCRSCVCVVVNP 147
           GQKCQWMKKCGHIFHCSCIDRWLRTERECPLCRSCVCVVVNP
Sbjct: 106 GQKCQWMKKCGHIFHCSCIDRWLRTERECPLCRSCVCVVVNP 147

[Close]
BLAST of CsaV3_1G034180 vs. TrEMBL
Match: tr|A0A1S3C6H7|A0A1S3C6H7_CUCME (RING-H2 finger protein ATL66-like OS=Cucumis melo OX=3656 GN=LOC103497236 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 6.8e-32
Identity = 77/115 (66.96%), Postives = 83/115 (72.17%), Query Frame = 0 

Query: 45  KAGNNE---SEFDTGTVEDRLPVFRER------EIVQIETMVFSYYREAK----GSENDD 104
           K GNN+    + D GTVE+ LP FRER      EIVQIE MVFS YREAK          
Sbjct: 46  KTGNNDYQSDQSDVGTVEE-LPAFRERVVRDQQEIVQIEAMVFS-YREAKRXXXXXXXXX 105

Query: 105 DYECVICLNKFEDGQKCQWMKKCGHIFHCSCIDRWLRTERECPLCRSCVCVVVNP 147
             ECVICLNKFED QKC+WMKKCGHIFH SCIDRWL+TERECPLCR+CVCVVV P
Sbjct: 106 XXECVICLNKFEDAQKCRWMKKCGHIFHRSCIDRWLKTERECPLCRTCVCVVVKP 158

[Close]
BLAST of CsaV3_1G034180 vs. TrEMBL
Match: tr|A0A1S3C5E4|A0A1S3C5E4_CUCME (RING-H2 finger protein ATL64-like OS=Cucumis melo OX=3656 GN=LOC103497234 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.0e-15
Identity = 39/75 (52.00%), Postives = 50/75 (66.67%), Query Frame = 0 

Query: 71  VQIETMVFSYYREAKGSENDDDYECVICLNKFEDGQKCQWMKKCGHIFHCSCIDRWLRTE 130
           + I+  VF Y     G + DD+ EC ICL + E+G+KC+ MK CGH+FH  CIDRW   E
Sbjct: 31  LDIQASVFHY-----GVDGDDEQECAICLCEIEEGEKCRKMKMCGHVFHKDCIDRWFTVE 90

Query: 131 RECPLCRSCVCVVVN 146
             CPLCR+ VCVVV+
Sbjct: 91  LHCPLCRTSVCVVVD 100

[Close]
BLAST of CsaV3_1G034180 vs. TrEMBL
Match: tr|A0A1S3C741|A0A1S3C741_CUCME (RING-H2 finger protein ATL63-like OS=Cucumis melo OX=3656 GN=LOC103497233 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 6.4e-14
Identity = 37/75 (49.33%), Postives = 48/75 (64.00%), Query Frame = 0 

Query: 71  VQIETMVFSYYREAKGSENDDDYECVICLNKFEDGQKCQWMKKCGHIFHCSCIDRWLRTE 130
           + I+  +F Y     G + DD+ EC ICL + E+G+KC+ MK CGH FH  CIDRW   E
Sbjct: 69  LNIQAPIFHY-----GIDGDDEQECAICLCEIEEGEKCRKMKTCGHAFHKDCIDRWFTVE 128

Query: 131 RECPLCRSCVCVVVN 146
             CPLCR+  CVVV+
Sbjct: 129 LHCPLCRTSGCVVVD 138

[Close]
BLAST of CsaV3_1G034180 vs. TrEMBL
Match: tr|A0A0A0K790|A0A0A0K790_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G387140 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 8.3e-14
Identity = 38/76 (50.00%), Postives = 50/76 (65.79%), Query Frame = 0 

Query: 69  EIVQIETMVFSYYREAKGSENDDDYECVICLNKFEDGQKCQWMKKCGHIFHCSCIDRWLR 128
           E + IE  +F Y     G E D+  EC ICL + E+G+KC+ MK CGH+FH  CIDRW +
Sbjct: 67  ENLDIEAPIFHY----NGVEGDEQ-ECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFK 126

Query: 129 TERECPLCRSCVCVVV 145
            +  CP+CR+ VCVVV
Sbjct: 127 VDGHCPICRTSVCVVV 137

The following BLAST results are available for this feature:
BLAST of CsaV3_1G034180 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004151032.11.7e-5599.02PREDICTED: RING-H2 finger protein ATL66 [Cucumis sativus] >KGN65719.1 hypothetic... [more]
XP_008457571.11.0e-3166.96PREDICTED: RING-H2 finger protein ATL66-like [Cucumis melo][more]
XP_022998666.16.4e-2663.27RING-H2 finger protein ATL56-like [Cucurbita maxima][more]
XP_023524567.17.1e-2561.22RING-H2 finger protein ATL56-like [Cucurbita pepo subsp. pepo][more]
XP_023524566.12.1e-2166.23RING-H2 finger protein ATL66-like [Cucurbita pepo subsp. pepo][more]
BLAST of CsaV3_1G034180 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G10380.11.3e-1243.55RING/U-box superfamily protein[more]
AT5G17600.14.9e-1238.67RING/U-box superfamily protein[more]
AT4G09120.16.4e-1242.47RING/U-box superfamily protein[more]
AT2G27940.11.4e-1146.77RING/U-box superfamily protein[more]
AT4G09130.11.4e-1141.79RING/U-box superfamily protein[more]
BLAST of CsaV3_1G034180 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9LX93|ATL55_ARATH2.3e-1143.55E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 ... [more]
sp|Q9LF64|ATL52_ARATH8.9e-1138.67RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1[more]
sp|Q9M0R5|ATL36_ARATH1.2e-1042.47Putative RING-H2 finger protein ATL36 OS=Arabidopsis thaliana OX=3702 GN=ATL36 P... [more]
sp|Q9M0R6|ATL35_ARATH2.6e-1041.10Putative RING-H2 finger protein ATL35 OS=Arabidopsis thaliana OX=3702 GN=ATL35 P... [more]
sp|Q9M0R4|ATL37_ARATH2.6e-1041.79Putative RING-H2 finger protein ATL37 OS=Arabidopsis thaliana OX=3702 GN=ATL37 P... [more]
BLAST of CsaV3_1G034180 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LXE1|A0A0A0LXE1_CUCSA1.1e-5599.02Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G515480 PE=4 SV=1[more]
tr|A0A1S3C6H7|A0A1S3C6H7_CUCME6.8e-3266.96RING-H2 finger protein ATL66-like OS=Cucumis melo OX=3656 GN=LOC103497236 PE=4 S... [more]
tr|A0A1S3C5E4|A0A1S3C5E4_CUCME2.0e-1552.00RING-H2 finger protein ATL64-like OS=Cucumis melo OX=3656 GN=LOC103497234 PE=4 S... [more]
tr|A0A1S3C741|A0A1S3C741_CUCME6.4e-1449.33RING-H2 finger protein ATL63-like OS=Cucumis melo OX=3656 GN=LOC103497233 PE=4 S... [more]
tr|A0A0A0K790|A0A0A0K790_CUCSA8.3e-1450.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G387140 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G034180.1CsaV3_1G034180.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 95..136
e-value: 1.9E-5
score: 34.1
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 94..137
e-value: 1.4E-14
score: 54.0
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 95..137
score: 12.843
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 57..141
e-value: 5.9E-18
score: 66.3
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 37..138
NoneNo IPR availablePANTHERPTHR14155:SF441SUBFAMILY NOT NAMEDcoord: 37..138
NoneNo IPR availableSUPERFAMILYSSF57850RING/U-boxcoord: 88..143

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G034180MELO3C020635Melon (DHL92) v3.5.1cucmeB025
CsaV3_1G034180MELO3C020635.2Melon (DHL92) v3.6.1cucmedB023
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G034180Cucumber (Chinese Long) v3cuccucB024
CsaV3_1G034180Cucumber (Chinese Long) v3cuccucB029
CsaV3_1G034180Cucumber (Chinese Long) v3cuccucB049
CsaV3_1G034180Silver-seed gourdcarcucB0336
CsaV3_1G034180Silver-seed gourdcarcucB0364
CsaV3_1G034180Silver-seed gourdcarcucB0414
CsaV3_1G034180Silver-seed gourdcarcucB0472
CsaV3_1G034180Silver-seed gourdcarcucB1040
CsaV3_1G034180Cucumber (Gy14) v2cgybcucB001
CsaV3_1G034180Cucumber (Gy14) v2cgybcucB105
CsaV3_1G034180Cucumber (Gy14) v2cgybcucB163
CsaV3_1G034180Cucumber (Gy14) v2cgybcucB253
CsaV3_1G034180Cucumber (Gy14) v1cgycucB055
CsaV3_1G034180Cucumber (Gy14) v1cgycucB157
CsaV3_1G034180Cucumber (Gy14) v1cgycucB280
CsaV3_1G034180Cucurbita maxima (Rimu)cmacucB0250
CsaV3_1G034180Cucurbita maxima (Rimu)cmacucB0512
CsaV3_1G034180Cucurbita maxima (Rimu)cmacucB0648
CsaV3_1G034180Cucurbita maxima (Rimu)cmacucB0692
CsaV3_1G034180Cucurbita moschata (Rifu)cmocucB0236
CsaV3_1G034180Cucurbita moschata (Rifu)cmocucB0262
CsaV3_1G034180Cucurbita moschata (Rifu)cmocucB0500
CsaV3_1G034180Cucurbita moschata (Rifu)cmocucB0633
CsaV3_1G034180Cucurbita moschata (Rifu)cmocucB0677
CsaV3_1G034180Cucurbita pepo (Zucchini)cpecucB0331
CsaV3_1G034180Cucurbita pepo (Zucchini)cpecucB0625
CsaV3_1G034180Cucurbita pepo (Zucchini)cpecucB0664
CsaV3_1G034180Cucurbita pepo (Zucchini)cpecucB0875
CsaV3_1G034180Wild cucumber (PI 183967)cpicucB000
CsaV3_1G034180Wild cucumber (PI 183967)cpicucB130
CsaV3_1G034180Wild cucumber (PI 183967)cpicucB201
CsaV3_1G034180Wild cucumber (PI 183967)cpicucB314
CsaV3_1G034180Bottle gourd (USVL1VR-Ls)cuclsiB018
CsaV3_1G034180Bottle gourd (USVL1VR-Ls)cuclsiB001
CsaV3_1G034180Bottle gourd (USVL1VR-Ls)cuclsiB031
CsaV3_1G034180Melon (DHL92) v3.5.1cucmeB007
CsaV3_1G034180Melon (DHL92) v3.5.1cucmeB067
CsaV3_1G034180Melon (DHL92) v3.5.1cucmeB090
CsaV3_1G034180Melon (DHL92) v3.6.1cucmedB007
CsaV3_1G034180Melon (DHL92) v3.6.1cucmedB063
CsaV3_1G034180Watermelon (Charleston Gray)cucwcgB005
CsaV3_1G034180Watermelon (Charleston Gray)cucwcgB034
CsaV3_1G034180Watermelon (Charleston Gray)cucwcgB051
CsaV3_1G034180Watermelon (Charleston Gray)cucwcgB065
CsaV3_1G034180Watermelon (97103) v1cucwmB006
CsaV3_1G034180Watermelon (97103) v1cucwmB026
CsaV3_1G034180Watermelon (97103) v1cucwmB072
CsaV3_1G034180Watermelon (97103) v1cucwmB079
CsaV3_1G034180Watermelon (97103) v2cucwmbB014
CsaV3_1G034180Watermelon (97103) v2cucwmbB026
CsaV3_1G034180Watermelon (97103) v2cucwmbB042
CsaV3_1G034180Wax gourdcucwgoB021
CsaV3_1G034180Wax gourdcucwgoB050