CsaV3_1G034150 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G034150
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	RING-H2 finger protein ATL64-like
Location	chr1 : 21392413 .. 21392860 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGTTGTCACCGTCGCCTCTATCGCCGTTGCACTCTCCGATCCTACTTTCTGGCTTCTTTATGGTTTTGCTGACAATCTCCATGCTTTTTCTCATTGTGCTATTTTTATTCATTGTCATTTTATGTACAAAACGATCAGCCAAATTTGACGGGGAAGAGTTGCTGGAGAATCTGGACATTGAAGCACCAATTTTTCATTACATCGGAGTTGAAGGCAGCGAACAAGAATGTGTGATTTGCCTTTGTGAAATTGAGGAAGGAGAGAAGTGTAGAAAAAGATGAAGACGTGTGGTCATGTCATAAAGACTGCACTGACCGGTGGTTTAAGGTGGATGGCCATTGTCCAATTTATCGGACCTTCGTTTGTGTGGTAGTCGTTGATCGCAGTGGAATTGCCATGGCTTCTTCTTCATCTTTACCGACCCCCTTCATCAATCGAATTTAA

mRNA sequence

ATGCCGTTGTCACCGTCGCCTCTATCGCCGTTGCACTCTCCGATCCTACTTTCTGGCTTCTTTATGGTTTTGCTGACAATCTCCATGCTTTTTCTCATTGTGCTATTTTTATTCATTGTCATTTTATGTACAAAACGATCAGCCAAATTTGACGGGGAAGAGTTGCTGGAGAATCTGGACATTGAAGCACCAATTTTTCATTACATCGGAGTTGAAGGCAGCGAACAAGAATACTGCACTGACCGGTGGTTTAAGGTGGATGGCCATTGTCCAATTTATCGGACCTTCGTTTGTGTGGTAGTCGTTGATCGCAGTGGAATTGCCATGGCTTCTTCTTCATCTTTACCGACCCCCTTCATCAATCGAATTTAA

Coding sequence (CDS)

ATGCCGTTGTCACCGTCGCCTCTATCGCCGTTGCACTCTCCGATCCTACTTTCTGGCTTCTTTATGGTTTTGCTGACAATCTCCATGCTTTTTCTCATTGTGCTATTTTTATTCATTGTCATTTTATGTACAAAACGATCAGCCAAATTTGACGGGGAAGAGTTGCTGGAGAATCTGGACATTGAAGCACCAATTTTTCATTACATCGGAGTTGAAGGCAGCGAACAAGAATACTGCACTGACCGGTGGTTTAAGGTGGATGGCCATTGTCCAATTTATCGGACCTTCGTTTGTGTGGTAGTCGTTGATCGCAGTGGAATTGCCATGGCTTCTTCTTCATCTTTACCGACCCCCTTCATCAATCGAATTTAA

Protein sequence

MPLSPSPLSPLHSPILLSGFFMVLLTISMLFLIVLFLFIVILCTKRSAKFDGEELLENLDIEAPIFHYIGVEGSEQEYCTDRWFKVDGHCPIYRTFVCVVVVDRSGIAMASSSSLPTPFINRI

Homology

[Close]

BLAST of CsaV3_1G034150 vs. NCBI nr
Match: KGN65716.1 (hypothetical protein Csa_1G513470 [Cucumis sativus])

HSP 1 Score: 221.9 bits (564), Expect = 1.2e-54
Identity = 122/123 (99.19%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 1   MPLSPSPLSPLHSPILLSGFFMVLLTISXXXXXXXXXXXXXLCTKRSAKFDGEELLENLD 60
           MPLSPSPLSPLHSPILLSGFFMVLLTISXXXXXXXXXXXXXLCTKRSAKFDGEELLENLD
Sbjct: 1   MPLSPSPLSPLHSPILLSGFFMVLLTISXXXXXXXXXXXXXLCTKRSAKFDGEELLENLD 60

Query: 61  IEAPIFHYIGVEGSEQEYCTDRWFKVDGHCPIYRTFVCVVVVDRSGIAMASSSSLPTPFI 120
           IEAPIFHYIGVEGSEQEYCTDRWFKVDGHCPIYRTFVCVVVVDR GIAMASSSSLPTPFI
Sbjct: 61  IEAPIFHYIGVEGSEQEYCTDRWFKVDGHCPIYRTFVCVVVVDRGGIAMASSSSLPTPFI 120

Query: 121 NRI 124
           NRI
Sbjct: 121 NRI 123

[Close]

BLAST of CsaV3_1G034150 vs. NCBI nr
Match: XP_011648512.1 (PREDICTED: RING-H2 finger protein ATL67-like [Cucumis sativus])

HSP 1 Score: 173.3 bits (438), Expect = 5.1e-40
Identity = 94/149 (63.09%), Postives = 101/149 (67.79%), Query Frame = 0


Query: 1   MPLSPSPLSPLHSPILLSGFFMVLLTISXXXXXXXXXXXXXLCTKRSAKFDGEELLENLD 60
           MPLSPSPL PLHSPILL GFFMVL+T+S   XXX       LCTKRSAK+DGEE  +NLD
Sbjct: 1   MPLSPSPLPPLHSPILLPGFFMVLMTVSMLLXXXLFLFIAILCTKRSAKYDGEESSDNLD 60

Query: 61  IEAPIFHYIGVEGSEQEY--------------------------CTDRWFKVDGHCPIYR 120
           IEAPIFHY GVEG EQE                           C DRWFKV+GHCPI R
Sbjct: 61  IEAPIFHYSGVEGGEQECVICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICR 120

Query: 121 TFVCVVVVDRSGIAMASSSSLPTPFINRI 124
           T VC+VV+DR G AMASSSSLPTPFINRI
Sbjct: 121 TSVCMVVIDRGGNAMASSSSLPTPFINRI 149

[Close]

BLAST of CsaV3_1G034150 vs. NCBI nr
Match: XP_011659858.1 (PREDICTED: E3 ubiquitin-protein ligase ATL9-like [Cucumis sativus])

HSP 1 Score: 170.6 bits (431), Expect = 3.3e-39
Identity = 103/149 (69.13%), Postives = 105/149 (70.47%), Query Frame = 0


Query: 1   MPLSPSPLSPLHSPILLSGFFMVLLTISXXXXXXXXXXXXXLCTKRSAKFDGEELLENLD 60
           MPLSPSPL PLHSPILL GFFMVLLTIS XXXXXXXXX   LCTKRSAK D EEL ENLD
Sbjct: 1   MPLSPSPLPPLHSPILLPGFFMVLLTISMXXXXXXXXXIAILCTKRSAKSDREELSENLD 60

Query: 61  IEAPIFHYIGVEGSEQEY--------------------------CTDRWFKVDGHCPIYR 120
           IEAPIFHY  VEG EQE                           C DRWFKV+GHCPI R
Sbjct: 61  IEAPIFHYNEVEGGEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICR 120

Query: 121 TFVCVVVVDRSGIAMASSSSLPTPFINRI 124
           T VCVVV+DR G AMASSSSLPTPFINRI
Sbjct: 121 TSVCVVVIDRGGNAMASSSSLPTPFINRI 149

[Close]

BLAST of CsaV3_1G034150 vs. NCBI nr
Match: KGN44779.1 (hypothetical protein Csa_7G387140 [Cucumis sativus])

HSP 1 Score: 157.9 bits (398), Expect = 2.2e-35
Identity = 88/149 (59.06%), Postives = 91/149 (61.07%), Query Frame = 0


Query: 1   MPLSPSPLSPLHSPILLSGFFMVLLTISXXXXXXXXXXXXXLCTKRSAKFDGEELLENLD 60
           MPLSPSP+  LHS ILL GF M LLT+              LC KRSAK DGEEL ENLD
Sbjct: 11  MPLSPSPIPSLHSLILLPGFIMDLLTVPMLLLIVLFSFILILCRKRSAKSDGEELPENLD 70

Query: 61  IEAPIFHYIGVEGSEQEY--------------------------CTDRWFKVDGHCPIYR 120
           IEAPIFHY GVEG EQE                           C DRWFKVDGHCPI R
Sbjct: 71  IEAPIFHYNGVEGDEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVDGHCPICR 130

Query: 121 TFVCVVVVDRSGIAMASSSSLPTPFINRI 124
           T VCVVVVD  G AMASSSSLPTPFIN+I
Sbjct: 131 TSVCVVVVDHGGNAMASSSSLPTPFINQI 159

[Close]

BLAST of CsaV3_1G034150 vs. NCBI nr
Match: XP_011659772.1 (PREDICTED: RING-H2 finger protein ATL39-like [Cucumis sativus])

HSP 1 Score: 157.9 bits (398), Expect = 2.2e-35
Identity = 88/149 (59.06%), Postives = 91/149 (61.07%), Query Frame = 0


Query: 1   MPLSPSPLSPLHSPILLSGFFMVLLTISXXXXXXXXXXXXXLCTKRSAKFDGEELLENLD 60
           MPLSPSP+  LHS ILL GF M LLT+              LC KRSAK DGEEL ENLD
Sbjct: 1   MPLSPSPIPSLHSLILLPGFIMDLLTVPMLLLIVLFSFILILCRKRSAKSDGEELPENLD 60

Query: 61  IEAPIFHYIGVEGSEQEY--------------------------CTDRWFKVDGHCPIYR 120
           IEAPIFHY GVEG EQE                           C DRWFKVDGHCPI R
Sbjct: 61  IEAPIFHYNGVEGDEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVDGHCPICR 120

Query: 121 TFVCVVVVDRSGIAMASSSSLPTPFINRI 124
           T VCVVVVD  G AMASSSSLPTPFIN+I
Sbjct: 121 TSVCVVVVDHGGNAMASSSSLPTPFINQI 149

[Close]

BLAST of CsaV3_1G034150 vs. TrEMBL
Match: tr|A0A0A0M0G7|A0A0A0M0G7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G513470 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 8.2e-55
Identity = 122/123 (99.19%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 1   MPLSPSPLSPLHSPILLSGFFMVLLTISXXXXXXXXXXXXXLCTKRSAKFDGEELLENLD 60
           MPLSPSPLSPLHSPILLSGFFMVLLTISXXXXXXXXXXXXXLCTKRSAKFDGEELLENLD
Sbjct: 1   MPLSPSPLSPLHSPILLSGFFMVLLTISXXXXXXXXXXXXXLCTKRSAKFDGEELLENLD 60

Query: 61  IEAPIFHYIGVEGSEQEYCTDRWFKVDGHCPIYRTFVCVVVVDRSGIAMASSSSLPTPFI 120
           IEAPIFHYIGVEGSEQEYCTDRWFKVDGHCPIYRTFVCVVVVDR GIAMASSSSLPTPFI
Sbjct: 61  IEAPIFHYIGVEGSEQEYCTDRWFKVDGHCPIYRTFVCVVVVDRGGIAMASSSSLPTPFI 120

Query: 121 NRI 124
           NRI
Sbjct: 121 NRI 123

[Close]

BLAST of CsaV3_1G034150 vs. TrEMBL
Match: tr|A0A0A0K790|A0A0A0K790_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G387140 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.5e-35
Identity = 88/149 (59.06%), Postives = 91/149 (61.07%), Query Frame = 0


Query: 1   MPLSPSPLSPLHSPILLSGFFMVLLTISXXXXXXXXXXXXXLCTKRSAKFDGEELLENLD 60
           MPLSPSP+  LHS ILL GF M LLT+              LC KRSAK DGEEL ENLD
Sbjct: 11  MPLSPSPIPSLHSLILLPGFIMDLLTVPMLLLIVLFSFILILCRKRSAKSDGEELPENLD 70

Query: 61  IEAPIFHYIGVEGSEQEY--------------------------CTDRWFKVDGHCPIYR 120
           IEAPIFHY GVEG EQE                           C DRWFKVDGHCPI R
Sbjct: 71  IEAPIFHYNGVEGDEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVDGHCPICR 130

Query: 121 TFVCVVVVDRSGIAMASSSSLPTPFINRI 124
           T VCVVVVD  G AMASSSSLPTPFIN+I
Sbjct: 131 TSVCVVVVDHGGNAMASSSSLPTPFINQI 159

[Close]

BLAST of CsaV3_1G034150 vs. TrEMBL
Match: tr|A0A0A0LUU6|A0A0A0LUU6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G512470 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 2.7e-29
Identity = 72/128 (56.25%), Postives = 79/128 (61.72%), Query Frame = 0


Query: 22  MVLLTISXXXXXXXXXXXXXLCTKRSAKFDGEELLENLDIEAPIFHYIGVEGSEQEY--- 81
           MVL+T+S             LCTKRSAK+DGEE  +NLDIEAPIFHY GVEG EQE    
Sbjct: 1   MVLMTVSMLLLIVLFLFIAILCTKRSAKYDGEESSDNLDIEAPIFHYSGVEGGEQECVIC 60

Query: 82  -----------------------CTDRWFKVDGHCPIYRTFVCVVVVDRSGIAMASSSSL 124
                                  C DRWFKV+GHCPI RT VC+VV+DR G AMASSSSL
Sbjct: 61  LCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRTSVCMVVIDRGGNAMASSSSL 120

[Close]

BLAST of CsaV3_1G034150 vs. TrEMBL
Match: tr|A0A0A0LY10|A0A0A0LY10_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G514470 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.6e-24
Identity = 72/147 (48.98%), Postives = 79/147 (53.74%), Query Frame = 0


Query: 1   MPLSPSPLSPLHSPILLSGFFMVLLTISXXXXXXXXXXXXXLCTKRSAKFDGEELLENLD 60
           M LSPSPL  LHS ILL  +   LL  S             LC KRSAK D EE  EN+D
Sbjct: 1   MSLSPSPLPSLHSLILLPRYIEDLLMASMFLSIVLLLFISILCRKRSAKSDVEEFPENVD 60

Query: 61  IEAPIFHYIGVEGSEQEY--------------------------CTDRWFKVDGHCPIYR 120
           IEAPIFHY G EG EQ+                           C  RWFKVDGHCPI R
Sbjct: 61  IEAPIFHYGGDEGGEQDCAICLCEIEEGEKCRKMKTCGHVFHKDCIGRWFKVDGHCPICR 120

Query: 121 TFVCVVVVDRSGIAMASSSSLPTPFIN 122
           T VCVVVVDR G A+ SS+SL  P++N
Sbjct: 121 TSVCVVVVDRGGNAITSSTSLLIPYMN 147

[Close]

BLAST of CsaV3_1G034150 vs. TrEMBL
Match: tr|A0A0A0LY13|A0A0A0LY13_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G521990 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.9e-20
Identity = 55/106 (51.89%), Postives = 64/106 (60.38%), Query Frame = 0


Query: 42  LCTKRSAKFDGEELLENLDIEAPIFHYIGVEGSEQEY----------------------- 101
           +C+KR AK D EEL +N+D+EA +FHY G EG EQEY                       
Sbjct: 17  VCSKRFAKSDVEELPKNVDLEALVFHYNGDEGGEQEYAICLCEIEEGEKCRKMKTCGHVF 76

Query: 102 ---CTDRWFKVDGHCPIYRTFVCVVVVDRSGIAMASSSSLPTPFIN 122
              C DRWFKVD HCPI RT VCVVVVD  G AMASS+SLP P++N
Sbjct: 77  HKDCIDRWFKVDDHCPICRTSVCVVVVDHGGNAMASSTSLPIPYMN 122

The following BLAST results are available for this feature:

BLAST of CsaV3_1G034150 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65716.1	1.2e-54	99.19	hypothetical protein Csa_1G513470 [Cucumis sativus]	[more]
XP_011648512.1	5.1e-40	63.09	PREDICTED: RING-H2 finger protein ATL67-like [Cucumis sativus]	[more]
XP_011659858.1	3.3e-39	69.13	PREDICTED: E3 ubiquitin-protein ligase ATL9-like [Cucumis sativus]	[more]
KGN44779.1	2.2e-35	59.06	hypothetical protein Csa_7G387140 [Cucumis sativus]	[more]
XP_011659772.1	2.2e-35	59.06	PREDICTED: RING-H2 finger protein ATL39-like [Cucumis sativus]	[more]

BLAST of CsaV3_1G034150 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G034150 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G034150 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0M0G7\|A0A0A0M0G7_CUCSA	8.2e-55	99.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G513470 PE=4 SV=1	[more]
tr\|A0A0A0K790\|A0A0A0K790_CUCSA	1.5e-35	59.06	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G387140 PE=4 SV=1	[more]
tr\|A0A0A0LUU6\|A0A0A0LUU6_CUCSA	2.7e-29	56.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G512470 PE=4 SV=1	[more]
tr\|A0A0A0LY10\|A0A0A0LY10_CUCSA	2.6e-24	48.98	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G514470 PE=4 SV=1	[more]
tr\|A0A0A0LY13\|A0A0A0LY13_CUCSA	2.9e-20	51.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G521990 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G034150.1	CsaV3_1G034150.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G034150	Cucumber (Gy14) v2	cgybcucB001
CsaV3_1G034150	Cucumber (Gy14) v2	cgybcucB105
CsaV3_1G034150	Cucumber (Gy14) v2	cgybcucB163
CsaV3_1G034150	Cucumber (Gy14) v2	cgybcucB253
CsaV3_1G034150	Cucumber (Gy14) v1	cgycucB055
CsaV3_1G034150	Cucumber (Gy14) v1	cgycucB280
CsaV3_1G034150	Cucurbita maxima (Rimu)	cmacucB0250
CsaV3_1G034150	Cucurbita maxima (Rimu)	cmacucB0512
CsaV3_1G034150	Cucurbita maxima (Rimu)	cmacucB0648
CsaV3_1G034150	Cucurbita maxima (Rimu)	cmacucB0692
CsaV3_1G034150	Cucurbita moschata (Rifu)	cmocucB0236
CsaV3_1G034150	Cucurbita moschata (Rifu)	cmocucB0262
CsaV3_1G034150	Cucurbita moschata (Rifu)	cmocucB0500
CsaV3_1G034150	Cucurbita moschata (Rifu)	cmocucB0633
CsaV3_1G034150	Cucurbita moschata (Rifu)	cmocucB0677
CsaV3_1G034150	Cucurbita pepo (Zucchini)	cpecucB0331
CsaV3_1G034150	Cucurbita pepo (Zucchini)	cpecucB0625
CsaV3_1G034150	Cucurbita pepo (Zucchini)	cpecucB0664
CsaV3_1G034150	Cucurbita pepo (Zucchini)	cpecucB0875
CsaV3_1G034150	Wild cucumber (PI 183967)	cpicucB000
CsaV3_1G034150	Wild cucumber (PI 183967)	cpicucB130
CsaV3_1G034150	Wild cucumber (PI 183967)	cpicucB201
CsaV3_1G034150	Wild cucumber (PI 183967)	cpicucB314
CsaV3_1G034150	Bottle gourd (USVL1VR-Ls)	cuclsiB018
CsaV3_1G034150	Bottle gourd (USVL1VR-Ls)	cuclsiB001
CsaV3_1G034150	Bottle gourd (USVL1VR-Ls)	cuclsiB031
CsaV3_1G034150	Melon (DHL92) v3.5.1	cucmeB007
CsaV3_1G034150	Melon (DHL92) v3.5.1	cucmeB025
CsaV3_1G034150	Melon (DHL92) v3.5.1	cucmeB067
CsaV3_1G034150	Melon (DHL92) v3.5.1	cucmeB090
CsaV3_1G034150	Melon (DHL92) v3.6.1	cucmedB007
CsaV3_1G034150	Melon (DHL92) v3.6.1	cucmedB023
CsaV3_1G034150	Melon (DHL92) v3.6.1	cucmedB063
CsaV3_1G034150	Watermelon (Charleston Gray)	cucwcgB005
CsaV3_1G034150	Watermelon (Charleston Gray)	cucwcgB034
CsaV3_1G034150	Watermelon (Charleston Gray)	cucwcgB051
CsaV3_1G034150	Watermelon (Charleston Gray)	cucwcgB065
CsaV3_1G034150	Watermelon (97103) v1	cucwmB006
CsaV3_1G034150	Watermelon (97103) v1	cucwmB026
CsaV3_1G034150	Watermelon (97103) v1	cucwmB072
CsaV3_1G034150	Watermelon (97103) v1	cucwmB079
CsaV3_1G034150	Watermelon (97103) v2	cucwmbB014
CsaV3_1G034150	Watermelon (97103) v2	cucwmbB026
CsaV3_1G034150	Watermelon (97103) v2	cucwmbB042
CsaV3_1G034150	Wax gourd	cucwgoB021
CsaV3_1G034150	Wax gourd	cucwgoB050
CsaV3_1G034150	Cucumber (Chinese Long) v3	cuccucB024
CsaV3_1G034150	Cucumber (Chinese Long) v3	cuccucB029
CsaV3_1G034150	Cucumber (Chinese Long) v3	cuccucB049
CsaV3_1G034150	Silver-seed gourd	carcucB0336
CsaV3_1G034150	Silver-seed gourd	carcucB0364
CsaV3_1G034150	Silver-seed gourd	carcucB0414
CsaV3_1G034150	Silver-seed gourd	carcucB0472
CsaV3_1G034150	Silver-seed gourd	carcucB1040