CsaV3_1G034020 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G034020
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 21244704 .. 21248495 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAACCATGATCAAGGTGGGCATTGGATTCTCTGTCTCAAATGTCAACCATTCCTTTTCAAAGAAAGGCCATAATTAGCAAAGAATGTTCCTTACACAAAACCCTATTTCATGTCTTCTTCCTTTTTGTTAAACAAGTAGGCTAAGCTAAGTGCCCCTAATTAAACTAATCTCTCTTATTATTTTCTCTCAATATAATGAAAACAGTGACACTTTATCATCTTCTATTGTCATTGCTTCTGTTTGCTGCTTTCCAACCATCTCCCCTCCATCTTCCTTCAACGGTGGCTCTTGGAGCGAAGATCACCAACAAAGGTAGATGTCATCACTATATATGCTTTTTAATTCACTTTCTACAAACACAACTTTTGTAATTTTCTATATGTAGTAATTCTAATTTCTAAACAAAGCTTTTTTCATATGCCTATAGCCATTGTTAATTGAACTAATTACTAGAGATAACATGGCAAGATAATACATTGAACTTTTTTAGTATAATAATTGGAGATGAGGACATCTCATCCCTCATCCCTCATCTCTCATCTCTAAGATGGTTAATTACCACTATGAGTACTTGAAGCTTGCTTTGGTTCTTAGATACATATATAGTTAAGAGAATAGATGAGAGACTTCGTACGAATAAGGGCAAATAAACCAAAAGCTTCAATGGGATCACCTGCATGTGTGTGTTATACATATTTTAATTGGAGTTTTTTTCTTTTCTCAATTGATATATATTTTAGCTTAAAATACTGTTTAGGTTCACGTTTAGTTTAAGTTTAAATGAATCAATTATAGCCTTGTACTTCTCATCAATTTTGAATTTAATCAATTTTTATCGAAATTGATTAAAATACGTACTTTCAAGTTTGTTCAATTTTAATTTATATAACTTTGATGGTCCAGTATTAGTCTATTATTTTTAATATATAATAACATTTTTATTCTAAAAATAAAATATGAGAATATGTTTTCAAAGTTTATAGAAAAAATATGATAGATAAAAAGATTTTTTTTCTCTAAAAAATAAAAACAACAGTAAACTAACATTTGAAGATTAAATTTAAGATATTTATAAATATAGTATCAAACTTATTTAAAACAATTGTTTAATATTAGAATTCAAAATTTTGATTTGGTATATAAATATAGTATTAAACGTATTTAAAACAATTGTTTAATATTAGAATTCAAAATTTTGATTTGGTATAAGAAGACATGAGATATAATTAACTTCAAATATAAATTTTGATTTGGTATATGAAGACATGATATATAATTAACTTGAAATGTAAAGTTGAAATATAAAATGACAAAATTGTTGTTAGTTCGCTGTTGACGATATGGGTCAAATTGATATTTAACTCTGATTTAGGTGTTAACATGTCGAGTTTAGAAACCCAAAACTTGAATTGCTAAAATCTAGACCTTATAAACCAAAAGTGTAATTAAAAGAAATAATTGAAAAAGTTATGGAGTAATTGTAATAACTTTTGATTTTTGAAAAAAGAAAATAAACATAATTCAATCAATTGTGTGAATCTATTTAGCCAAAGGGCAGAAGGAAGAGAATAAGCCCTTTTAGAACAACAAACAACAAACTTTGTAGATTGTATTTCATTCTTGTTCTAATAGTGAAAATGAGGTTATAAAGTAGTTTATAAAACACTATTTTGTTGATTTTATGTAGAGCTAAGATCTGTTCATCATTGGAGCTCCAATTCAATGCATATCAATGGTGAATTAGTTTCAAAGGTAATTTCATCCTATTATTTTCTTTTATCCAACTTTCTTTTTCTTCACAAATTTAACTTTTGTTACTTGACTATAATAGCGATCTCGTCAAAATCTAGTTCCAAAAGCAAAAATGTTATGGACTTGAAACTTGATATCCTAGAAAGAATACATCCTTACACAGACAAGTTTTTGTTTGAAATTGGTGTGTGAGAAACAAATGTAATGACTGTAATATTTTATAAGTATTTTGATTTATGGCTATTGAAATTTGGTTATATTTTGATTAATTTTGTTACATTTGAAAACAAAACTTATAAAAATGCATTCTACCCATGAAACCTCAAAAGCAAGCAGTCATAGTATCCTAAAGATCGAGCATAGCTCTATCCATTACCATCCTAAACAACCGTTCGATTGTTAAAATTAGATTAGAACAAGGGTAAAAAAAAGTAAAACAGTCTCCTAATTGTTTTCTTATTTTTAATAAGATGCAAAGGACTCATACCTGAAACTGTGTTCATTGTTATGATGATTGAAAGCAGGCAATTGAGAAGAGAGTTTATAAAAAGCCATCAGTCCCAAATCCAAAGGGGAATCATCTGCCTCCATCAACCAAATGACCAAAGCATCCATTTGTTTCTGTATTCAAAAACATAAACATTGTATTGTATTCCTCAAAGGCTATGTCTACTAAAAACTGGCTTTCTATCATCACTTCGGGTGGACACTCCTCCTCCCTTCTCTTCCTTCTGCCCTTTGCTAATACATTTCACATACTAAAAACACATACTCCTTTCACGCACCATATTTCTCACCTTCTTACACAAGTATGCTGCATCGTTAAATTCATAAGCTTCGTGTTTGTTAAGATGTCTCAAACCACAACAAATCAGAAACACACGTTAGGCATTGATATCAACATGTACTTCTCAACAAAACAGTAAACAAGGTCTCTCTCCCAAAGACTACATTTAACCAAAATAACTGATTTTCCCCCTGCAGTTCCCTCAGCTCCCTATCTATTAAGAAACCCGTTTGCTAACCTACTACTGACTCCTAGTTTCCCTGTTTACCCTTCCTTCATACCTACTTACAATTGGATGCTTAACACAAATAAATCCAAATAGTCTGTAGCCTTCCTATATGTAAGGGAAAGCAATCACTAATTCACATATATCCATGAAAAATATGTTTTAGCTGAGTAAATTCCTAACCTTCACAGGTGAAATGGCTATAGGTTACTTCTAACTAGAGATTCCCATAATAAGCATTGCAGTATGGGACAAGTCACATTCCCACTCTTGCATTCAACCTTTATGAACTTACCAAAGAGTTGCAGGATAGTTTATGTTTAACTAGTAAGAAAGCTAATTGAATTTTTTTGTACTATATTCAAAAATGAATTAGCAATATAATTGATGGTCACTATGTTTTAACTATTTCGCAATGTGTTAAAATATACACGGCTCAAAATTACCTACAAATATATCAGTGTATAATCTTTCATACTGCACGTTTCCTCTTTGATCGCTTGCTTCTCTTTTGTCGATTATAGGCTGGGACGTCTTTGTCTGCACTTGATGCATATGCCTCTTCTAGACCGTCCTCACCCTGTTAAGCACTTCAAATTAGTTTTTCATGAAAGCCCAAGTAATCAGCAATTCAGCACAAGGAGATAAACTATAACAGCAAGCCATCAGCTATCATAAAAATAAATAACCAATGATGGTAAAAAGAGACCAAGAATGAAAAAATAAGGACAACAATAATAACAAGTAGATAAAGCAGAGAAGTCAAAGGCATCCATATAGTTTCATTTAATATCTATCAGGCTTCAAGCCAATTTGAATTTAAATTGGAGAAAAAAAATATCTTTTCCAACATAATGAGTAATAACATAGAAGAAATTTCGAAGATAATCTTAATAGGATTGTCATACCATCGTTTCATGCACTAAAAATTTATCATATGTGCATTTCAGTAATGCACTAGAGAAGGTAATCTTTGATAAAATTTAACACCTAATTAGGTTTGAGCATACTACAATTAGCAGC

mRNA sequence

ATGAAAACAGTGACACTTTATCATCTTCTATTGTCATTGCTTCTGTTTGCTGCTTTCCAACCATCTCCCCTCCATCTTCCTTCAACGGTGGCTCTTGGAGCGAAGATCACCAACAAAGAGCTAAGATCTGTTCATCATTGGAGCTCCAATTCAATGCATATCAATGGTGAATTAGTTTCAAAGGTAATTTCATCCTATTATTTTCTTTTATCCAACTTTCTTTTTCTTCACAAATTTAACTTTTGTTACTTGACTATAATAGCGATCTCGTCAAAATCTAGTTCCAAAAGCAAAAATGTTATGGACTTGAAACTTGATATCCTAGAAAGAATACATCCTTACACAGACAAGTTTTTGTTTGAAATTGGTGTGTGA

Coding sequence (CDS)

ATGAAAACAGTGACACTTTATCATCTTCTATTGTCATTGCTTCTGTTTGCTGCTTTCCAACCATCTCCCCTCCATCTTCCTTCAACGGTGGCTCTTGGAGCGAAGATCACCAACAAAGAGCTAAGATCTGTTCATCATTGGAGCTCCAATTCAATGCATATCAATGGTGAATTAGTTTCAAAGGTAATTTCATCCTATTATTTTCTTTTATCCAACTTTCTTTTTCTTCACAAATTTAACTTTTGTTACTTGACTATAATAGCGATCTCGTCAAAATCTAGTTCCAAAAGCAAAAATGTTATGGACTTGAAACTTGATATCCTAGAAAGAATACATCCTTACACAGACAAGTTTTTGTTTGAAATTGGTGTGTGA

Protein sequence

MKTVTLYHLLLSLLLFAAFQPSPLHLPSTVALGAKITNKELRSVHHWSSNSMHINGELVSKVISSYYFLLSNFLFLHKFNFCYLTIIAISSKSSSKSKNVMDLKLDILERIHPYTDKFLFEIGV
Homology
[Close]
BLAST of CsaV3_1G034020 vs. NCBI nr
Match: KGN65705.1 (hypothetical protein Csa_1G505900 [Cucumis sativus])

HSP 1 Score: 122.5 bits (306), Expect = 1.0e-24
Identity = 62/63 (98.41%), Postives = 62/63 (98.41%), Query Frame = 0 

Query: 1  MKTVTLYHLLLSLLLFAAFQPSPLHLPSTVALGAKITNKELRSVHHWSSNSMHINGELVS 60
          MKTVTLYHLLLSLLLFAAFQPSPLHLPSTVALGAKITNKELRSVHHWSSNSMHINGELVS
Sbjct: 1  MKTVTLYHLLLSLLLFAAFQPSPLHLPSTVALGAKITNKELRSVHHWSSNSMHINGELVS 60

Query: 61 KVI 64
          K I
Sbjct: 61 KAI 63

[Close]
BLAST of CsaV3_1G034020 vs. TrEMBL
Match: tr|A0A0A0LUT6|A0A0A0LUT6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G505900 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 6.8e-25
Identity = 62/63 (98.41%), Postives = 62/63 (98.41%), Query Frame = 0 

Query: 1  MKTVTLYHLLLSLLLFAAFQPSPLHLPSTVALGAKITNKELRSVHHWSSNSMHINGELVS 60
          MKTVTLYHLLLSLLLFAAFQPSPLHLPSTVALGAKITNKELRSVHHWSSNSMHINGELVS
Sbjct: 1  MKTVTLYHLLLSLLLFAAFQPSPLHLPSTVALGAKITNKELRSVHHWSSNSMHINGELVS 60

Query: 61 KVI 64
          K I
Sbjct: 61 KAI 63

The following BLAST results are available for this feature:
BLAST of CsaV3_1G034020 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN65705.11.0e-2498.41hypothetical protein Csa_1G505900 [Cucumis sativus][more]
BLAST of CsaV3_1G034020 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G034020 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G034020 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LUT6|A0A0A0LUT6_CUCSA6.8e-2598.41Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G505900 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G034020.1CsaV3_1G034020.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G034020CSPI01G22900Wild cucumber (PI 183967)cpicucB000
CsaV3_1G034020Lsi02G013680Bottle gourd (USVL1VR-Ls)cuclsiB031
CsaV3_1G034020MELO3C035341.2Melon (DHL92) v3.6.1cucmedB023
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G034020Watermelon (97103) v2cucwmbB042
CsaV3_1G034020Wax gourdcucwgoB021
CsaV3_1G034020Wax gourdcucwgoB050
CsaV3_1G034020Cucumber (Chinese Long) v3cuccucB029
CsaV3_1G034020Silver-seed gourdcarcucB0336
CsaV3_1G034020Silver-seed gourdcarcucB0364
CsaV3_1G034020Silver-seed gourdcarcucB0414
CsaV3_1G034020Silver-seed gourdcarcucB0472
CsaV3_1G034020Cucumber (Gy14) v2cgybcucB001
CsaV3_1G034020Cucumber (Gy14) v2cgybcucB163
CsaV3_1G034020Cucumber (Gy14) v1cgycucB055
CsaV3_1G034020Cucumber (Gy14) v1cgycucB333
CsaV3_1G034020Cucurbita maxima (Rimu)cmacucB0250
CsaV3_1G034020Cucurbita maxima (Rimu)cmacucB0512
CsaV3_1G034020Cucurbita maxima (Rimu)cmacucB0648
CsaV3_1G034020Cucurbita moschata (Rifu)cmocucB0236
CsaV3_1G034020Cucurbita moschata (Rifu)cmocucB0500
CsaV3_1G034020Cucurbita moschata (Rifu)cmocucB0633
CsaV3_1G034020Cucurbita moschata (Rifu)cmocucB0677
CsaV3_1G034020Cucurbita pepo (Zucchini)cpecucB0331
CsaV3_1G034020Cucurbita pepo (Zucchini)cpecucB0625
CsaV3_1G034020Cucurbita pepo (Zucchini)cpecucB0664
CsaV3_1G034020Cucurbita pepo (Zucchini)cpecucB0875
CsaV3_1G034020Wild cucumber (PI 183967)cpicucB201
CsaV3_1G034020Bottle gourd (USVL1VR-Ls)cuclsiB018
CsaV3_1G034020Melon (DHL92) v3.5.1cucmeB007
CsaV3_1G034020Melon (DHL92) v3.5.1cucmeB025
CsaV3_1G034020Melon (DHL92) v3.5.1cucmeB090
CsaV3_1G034020Melon (DHL92) v3.6.1cucmedB007
CsaV3_1G034020Watermelon (Charleston Gray)cucwcgB051
CsaV3_1G034020Watermelon (Charleston Gray)cucwcgB065
CsaV3_1G034020Watermelon (97103) v1cucwmB026
CsaV3_1G034020Watermelon (97103) v1cucwmB072