CsaV3_1G033900 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G033900
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 21053566 .. 21054931 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTCTGTAGTAGGTGAAATGAGAGATGGTGAGTGAGCCACGCTTGTAAACACTTTGAAGAACACGTGGTACTCAGGTCATACGAAAATCAGAAATAATTACTCTGTACTATTCAACTCATTTGTACCCAAAAATGGTGAAATTTCTCTCTGTTCTTCAATGGTCCCTCCCAAGCTCTCAAGGGTTTGTCATCTTCGGGTCAACGTAAATCAGAAATAATTACTTTGTTTCTTTTCTTTTATTGTTTCTTCCAAGCAAGCTTCTAATGGGTGTTGAAGTTTGCAAGGAAAATAACATCACAGTAGAAGAGTAAAGGAAGAAGAAGAGACTAACACAGGAGCTACGTGGTTCGATATAATTGTCTACATCCATGGTAAGGGGTTTCTTGAAGAAATCAGATGAGTCGTTTTCTCTCTTCACAAAAGCACACTTTTACTTTTTCTTCTTGAACAGATATGAACAGGTAATTATAATTTTATACCAGTCAGTACAAAAACTGTTTGTAAAGTGAAAATAGAATATAATTTGTTGGAGTCGCTTTCTTTCCAAAAGAGTGATATGGCATATTAATTTGCAATGAGGTAGTAATTTTTATAAATTTTATATCATTTTGATTTTCTTATATGATTTTGTTTTTCTTTCTCTTTCTTCTTTCCTCTCCCTCCTTCTTTCTCTCTCCCATGCATCTCTCTAATTATGTGTTATTCACAACTCAAAACTTCCATTTTTTAAATCGAAAGAAGCAAAGAAATGTGATACATTTTAGAATATCTGTGGCCCTTCTTCGGAAGTCTACAGTTTATTTCTAGGAAGAGCTTCGTATTCCCATATTTTATTAAAAGAATGTTCTTAAAATAAAATATATTCTTTTAATTAGAATTTTATCTCAAGATATTATTTTAAAGAAAGATCTGATGAATGTAAGATTTTATCTTTGTTTCTTTCGTGTGGGAGTTGATAGAATCTTGAGTTCCTATATTTTCTCTTTTGTTTGCATTCTGGTGGATGAGCAGAAAATTGAAAGACAGATTCGCATCATTGGGAAGCAATTCAACAAACAAGTAAACGATTCATTGGAATTAGTTGTTTTCTCTTTCTCAAAAGAAGATCAAGTTTCACTGTAATGAAGAAACACGAAACCTTGATCAGTTGATTGAGGAAAAACTTGATGAAAAATATAGTATGATAGAATCACTCAAGTCCAGATGAAAAATATCTACATTCTCTGAACTTATAATCACAAAAATTGTAATTATGATTCATATCTTAAAGAAATAAAATCTTAGATCCTGGGTCATGCACTCCCCAGAAAACATCTACTGGTTAACCATATCTTATGTTCCTTCTATCTCAATTATTTACTTATC

mRNA sequence

ATGGTAAGGGGTTTCTTGAAGAAATCAGATGAGTCGTTTTCTCTCTTCACAAAAGCACACTTTTACTTTTTCTTCTTGAACAGATATGAACAGAAAATTGAAAGACAGATTCGCATCATTGGGAAGCAATTCAACAAACAAGTAAACGATTCATTGGAATTAGTTGTTTTCTCTTTCTCAAAAGAAGATCAAGTTTCACTGTAA

Coding sequence (CDS)

ATGGTAAGGGGTTTCTTGAAGAAATCAGATGAGTCGTTTTCTCTCTTCACAAAAGCACACTTTTACTTTTTCTTCTTGAACAGATATGAACAGAAAATTGAAAGACAGATTCGCATCATTGGGAAGCAATTCAACAAACAAGTAAACGATTCATTGGAATTAGTTGTTTTCTCTTTCTCAAAAGAAGATCAAGTTTCACTGTAA

Protein sequence

MVRGFLKKSDESFSLFTKAHFYFFFLNRYEQKIERQIRIIGKQFNKQVNDSLELVVFSFSKEDQVSL
Homology
[Close]
BLAST of CsaV3_1G033900 vs. NCBI nr
Match: KGN65693.1 (hypothetical protein Csa_1G501830 [Cucumis sativus])

HSP 1 Score: 131.7 bits (330), Expect = 9.3e-28
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0 

Query: 1  MVRGFLKKSDESFSLFTKAHFYFFFLNRYEQKIERQIRIIGKQFNKQVNDSLELVVFSFS 60
          MVRGFLKKSDESFSLFTKAHFYFFFLNRYEQKIERQIRIIGKQFNKQVNDSLELVVFSFS
Sbjct: 1  MVRGFLKKSDESFSLFTKAHFYFFFLNRYEQKIERQIRIIGKQFNKQVNDSLELVVFSFS 60

Query: 61 KEDQVSL 68
          KEDQVSL
Sbjct: 61 KEDQVSL 67

[Close]
BLAST of CsaV3_1G033900 vs. TrEMBL
Match: tr|A0A0A0LV97|A0A0A0LV97_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G501830 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 6.1e-28
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0 

Query: 1  MVRGFLKKSDESFSLFTKAHFYFFFLNRYEQKIERQIRIIGKQFNKQVNDSLELVVFSFS 60
          MVRGFLKKSDESFSLFTKAHFYFFFLNRYEQKIERQIRIIGKQFNKQVNDSLELVVFSFS
Sbjct: 1  MVRGFLKKSDESFSLFTKAHFYFFFLNRYEQKIERQIRIIGKQFNKQVNDSLELVVFSFS 60

Query: 61 KEDQVSL 68
          KEDQVSL
Sbjct: 61 KEDQVSL 67

The following BLAST results are available for this feature:
BLAST of CsaV3_1G033900 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN65693.19.3e-28100.00hypothetical protein Csa_1G501830 [Cucumis sativus][more]
BLAST of CsaV3_1G033900 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G033900 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G033900 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LV97|A0A0A0LV97_CUCSA6.1e-28100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G501830 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G033900.1CsaV3_1G033900.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G033900Cucumber (Chinese Long) v3cuccucB029
CsaV3_1G033900Silver-seed gourdcarcucB0336
CsaV3_1G033900Silver-seed gourdcarcucB0364
CsaV3_1G033900Silver-seed gourdcarcucB0472
CsaV3_1G033900Silver-seed gourdcarcucB0765
CsaV3_1G033900Cucumber (Gy14) v2cgybcucB001
CsaV3_1G033900Cucumber (Gy14) v2cgybcucB163
CsaV3_1G033900Cucumber (Gy14) v1cgycucB055
CsaV3_1G033900Cucumber (Gy14) v1cgycucB333
CsaV3_1G033900Cucurbita maxima (Rimu)cmacucB0250
CsaV3_1G033900Cucurbita maxima (Rimu)cmacucB0512
CsaV3_1G033900Cucurbita maxima (Rimu)cmacucB0648
CsaV3_1G033900Cucurbita moschata (Rifu)cmocucB0236
CsaV3_1G033900Cucurbita moschata (Rifu)cmocucB0500
CsaV3_1G033900Cucurbita moschata (Rifu)cmocucB0633
CsaV3_1G033900Cucurbita moschata (Rifu)cmocucB0677
CsaV3_1G033900Cucurbita pepo (Zucchini)cpecucB0331
CsaV3_1G033900Cucurbita pepo (Zucchini)cpecucB0625
CsaV3_1G033900Cucurbita pepo (Zucchini)cpecucB0664
CsaV3_1G033900Cucurbita pepo (Zucchini)cpecucB0875
CsaV3_1G033900Wild cucumber (PI 183967)cpicucB000
CsaV3_1G033900Wild cucumber (PI 183967)cpicucB201
CsaV3_1G033900Bottle gourd (USVL1VR-Ls)cuclsiB018
CsaV3_1G033900Bottle gourd (USVL1VR-Ls)cuclsiB031
CsaV3_1G033900Melon (DHL92) v3.5.1cucmeB025
CsaV3_1G033900Melon (DHL92) v3.5.1cucmeB090
CsaV3_1G033900Melon (DHL92) v3.6.1cucmedB023
CsaV3_1G033900Watermelon (Charleston Gray)cucwcgB031
CsaV3_1G033900Watermelon (Charleston Gray)cucwcgB051
CsaV3_1G033900Watermelon (Charleston Gray)cucwcgB065
CsaV3_1G033900Watermelon (97103) v1cucwmB026
CsaV3_1G033900Watermelon (97103) v1cucwmB072
CsaV3_1G033900Watermelon (97103) v1cucwmB075
CsaV3_1G033900Watermelon (97103) v2cucwmbB024
CsaV3_1G033900Watermelon (97103) v2cucwmbB042
CsaV3_1G033900Wax gourdcucwgoB021
CsaV3_1G033900Wax gourdcucwgoB050