CsaV3_1G033790 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G033790
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr1 : 20892777 .. 20894236 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAAAGCAGCCACGTTATCAAGTCATGCCAAGCTGGAAGATGATTCAATGGATAAATAAAGTGACCATATGTCCTCTCACACAATTTCAATGCATTTACTTTATTTTTTTATTCATTATTTTATTTCCCAAATCAAGGGATCACAATTGTATATTTCCCATAATTCTGGAAAAATCAGAGGAATTATTTTACATAAACAAATTATCTCAAACCCTAATTTCTCTCTTTTCTTATTTTGGTATCAGAGCCTAAAATGGCCAACGTCACTCCAAATTTCTCTGTTCTTGACACACCTGTAACGAGTTTTTTCAAATCCACCGCTGAATCAAAATATTAAATCAACTTACAACAGTGAAGCTAGATAGAAGCAACTATTTATTGTGGAAGACGCTAGCTCTACCCATTCTGAAAGGATACAAGTTAGAAAGACATTTAACAGGTGAGAAACCTTGCCCTGAAAATTTCATCACTTCACTACCAGTGCATGTTCTAATACCTCGGTCATGGAAGGAGGAGATGACCATGAACAAAGGGCTCTTGAACAAATAGCTTCTTCCAGCACATCAACATATGCCATTATGAATCCCTTGTTTGAACAATGGATAACGATTGATTTGCTACTGCTTAGCTAGTTGTACAACTCAGTGACACCTGAAGTAGTTGTTCAACTAATAGGCTTCACAAATGCCAAAGATATGTGGGAAGCAACACATGATTTCTTTGGCGTTCGATCAAGAGCAGAGGAGGACTTCCTTCGACAAACCTTTCAAACAACAAGAAAAGGTAATTCTAACATGGAGGATTATCTAAGAATTATGAAAACTAATGCTGACAATCTTGGCCAAGCCGAAAGTCCTATTCCGAGACGTGCCCTTATTTCACAGGTTTTGTTGGGATTGGATGAAGTTTATAATCCTGTCATAGTAGTCATTCAAGGTAAGCCAGAGATATCATGGCTTGATATGCAGTCTAAACTTCTAATTTTTGAAAAGAGACTGAAACATCAAAATAGTCAGAAGAATATTGGTAACATTGTTCAAAATGCTACCATAAACATGGCGCAAAGTCGCAACAACAACGAACCTAGAGGTTCTGAAAATCATCAGTTTCATGGAAATAATAGAAATAATTTTCAAGGGCATCGAGGTGGTTCCAACAATAGCCGAGGATGTGGTAGGGGTCGTGGCAGTAAATCAACTTGTCAGGTAAGCGGAAAATATAGGCATTCTGCATTTATTTGTTACAATAGATTCAATAAAGAATTTGTAAGCCATATTGCTCAAGATCGTGAATTTCCATTTGCAACGCTTTTTTCTTCAGCCCAATCCGTGAACTAGTCCATTTCCTCATTTTTTTTTCTACAGAACCAGCCCTTCCTATCTCAATTTTTCCGCTTAACTCATCACCGTCGGCCCAATTGTAGCCATGTTATCAAGCCATGCCAAGGTGGAAGATGA

mRNA sequence

ATGACAAAGCAGCCACGTTATCAAGTCATGCCAAGCTGGAAGATGATTCAATGGATAAATAAATTGTACAACTCAGTGACACCTGAAGTAGTTGTTCAACTAATAGGCTTCACAAATGCCAAAGATATGTGGGAAGCAACACATGATTTCTTTGGCGTTCGATCAAGAGCAGAGGAGGACTTCCTTCGACAAACCTTTCAAACAACAAGAAAAGGTAATTCTAACATGGAGGATTATCTAAGAATTATGAAAACTAATGCTGACAATCTTGGCCAAGCCGAAAGTCCTATTCCGAGACGTGCCCTTATTTCACAGGTTTTGTTGGGATTGGATGAAGTTTATAATCCTGTCATAGTAGTCATTCAAGGTAAGCCAGAGATATCATGGCTTGATATGCAGTCTAAACTTCTAATTTTTGAAAAGAGACTGAAACATCAAAATAGTCAGAAGAATATTGGTAACATTGTTCAAAATGCTACCATAAACATGGCGCAAAGTCGCAACAACAACGAACCTAGAGGTTCTGAAAATCATCAGTTTCATGGAAATAATAGAAATAATTTTCAAGGGCATCGAGGTGGTTCCAACAATAGCCGAGGATGTGGTAGGGGTCGTGGCAGTAAATCAACTTGTCAGAACCAGCCCTTCCTATCTCAATTTTTCCGCTTAACTCATCACCGTCGGCCCAATTGTAGCCATGTTATCAAGCCATGCCAAGGTGGAAGATGA

Coding sequence (CDS)

ATGACAAAGCAGCCACGTTATCAAGTCATGCCAAGCTGGAAGATGATTCAATGGATAAATAAATTGTACAACTCAGTGACACCTGAAGTAGTTGTTCAACTAATAGGCTTCACAAATGCCAAAGATATGTGGGAAGCAACACATGATTTCTTTGGCGTTCGATCAAGAGCAGAGGAGGACTTCCTTCGACAAACCTTTCAAACAACAAGAAAAGGTAATTCTAACATGGAGGATTATCTAAGAATTATGAAAACTAATGCTGACAATCTTGGCCAAGCCGAAAGTCCTATTCCGAGACGTGCCCTTATTTCACAGGTTTTGTTGGGATTGGATGAAGTTTATAATCCTGTCATAGTAGTCATTCAAGGTAAGCCAGAGATATCATGGCTTGATATGCAGTCTAAACTTCTAATTTTTGAAAAGAGACTGAAACATCAAAATAGTCAGAAGAATATTGGTAACATTGTTCAAAATGCTACCATAAACATGGCGCAAAGTCGCAACAACAACGAACCTAGAGGTTCTGAAAATCATCAGTTTCATGGAAATAATAGAAATAATTTTCAAGGGCATCGAGGTGGTTCCAACAATAGCCGAGGATGTGGTAGGGGTCGTGGCAGTAAATCAACTTGTCAGAACCAGCCCTTCCTATCTCAATTTTTCCGCTTAACTCATCACCGTCGGCCCAATTGTAGCCATGTTATCAAGCCATGCCAAGGTGGAAGATGA

Protein sequence

MTKQPRYQVMPSWKMIQWINKLYNSVTPEVVVQLIGFTNAKDMWEATHDFFGVRSRAEEDFLRQTFQTTRKGNSNMEDYLRIMKTNADNLGQAESPIPRRALISQVLLGLDEVYNPVIVVIQGKPEISWLDMQSKLLIFEKRLKHQNSQKNIGNIVQNATINMAQSRNNNEPRGSENHQFHGNNRNNFQGHRGGSNNSRGCGRGRGSKSTCQNQPFLSQFFRLTHHRRPNCSHVIKPCQGGR
Homology
[Close]
BLAST of CsaV3_1G033790 vs. NCBI nr
Match: KGN65684.1 (hypothetical protein Csa_1G496800 [Cucumis sativus])

HSP 1 Score: 445.3 bits (1144), Expect = 1.4e-121
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 0 

Query: 1   MTKQPRYQVMPSWKMIQWINKLYNSVTPEVVVQLIGFTNAKDMWEATHDFFGVRSRAEED 60
           MTKQPRYQVMPSWKMIQWINKLYNSVTPEVVVQLIGFTNAKDMWEATHDFFGVRSRAEED
Sbjct: 1   MTKQPRYQVMPSWKMIQWINKLYNSVTPEVVVQLIGFTNAKDMWEATHDFFGVRSRAEED 60

Query: 61  FLRQTFQTTRKGNSNMEDYLRIMKTNADNLGQAESPIPRRALISQVLLGLDEVYNPVIVV 120
           FLRQTFQTTRKGNSNMEDYLRIMKTNADNLGQAESPIPRRALISQVLLGLDEVYNPVIVV
Sbjct: 61  FLRQTFQTTRKGNSNMEDYLRIMKTNADNLGQAESPIPRRALISQVLLGLDEVYNPVIVV 120

Query: 121 IQGKPEISWLDMQSKLLIFEKRLKHQNSQKNIGNIVQNATINMAQSRNNNEPRXXXXXXX 180
           IQGKPEISWLDMQSKLLIFEKRLKHQNSQKNIGNIVQNATINMAQSRNNNEPRXXXXXXX
Sbjct: 121 IQGKPEISWLDMQSKLLIFEKRLKHQNSQKNIGNIVQNATINMAQSRNNNEPRXXXXXXX 180

Query: 181 XXXXXXXXXXXXXGSNNSRGCGRGRGSKSTCQNQPFLSQFFRLTHHRRPNCSHVIKPCQG 240
           XXXXXXXXXXXXXGSNNSRGCGRGRGSKSTCQNQPFLSQFFRLTHHRRPNCSHVIKPCQG
Sbjct: 181 XXXXXXXXXXXXXGSNNSRGCGRGRGSKSTCQNQPFLSQFFRLTHHRRPNCSHVIKPCQG 240

Query: 241 GR 243
           GR
Sbjct: 241 GR 242

[Close]
BLAST of CsaV3_1G033790 vs. NCBI nr
Match: XP_022148963.1 (uncharacterized protein LOC111017501 [Momordica charantia])

HSP 1 Score: 156.0 bits (393), Expect = 1.6e-34
Identity = 78/135 (57.78%), Postives = 101/135 (74.81%), Query Frame = 0 

Query: 22  LYNSVTPEVVVQLIGFTNAKDMWEATHDFFGVRSRAEEDFLRQTFQTTRKGNSNMEDYLR 81
           LYNS+TPEV  Q++G+ NA D+W A  + FGV+S+AEED+LRQ FQ TRKG+  M D+LR
Sbjct: 49  LYNSMTPEVATQVMGYENACDLWAAIQELFGVQSQAEEDYLRQVFQQTRKGSLKMTDFLR 108

Query: 82  IMKTNADNLGQAESPIPRRALISQVLLGLDEVYNPVIVVIQGKPEISWLDMQSKLLIFE- 141
           +MK++ADNLGQA SP+P R+LISQVLLGLDE YNPV+  IQGK  ISW +MQ++      
Sbjct: 109 VMKSHADNLGQAGSPVPTRSLISQVLLGLDEEYNPVVATIQGKRGISWPEMQAEFRSVSG 168

Query: 142 -KRLKHQNSQKNIGN 155
             + ++QNSQ    N
Sbjct: 169 GNQRQNQNSQPPFNN 183

[Close]
BLAST of CsaV3_1G033790 vs. NCBI nr
Match: XP_016902197.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X1 [Cucumis melo])

HSP 1 Score: 155.2 bits (391), Expect = 2.8e-34
Identity = 85/145 (58.62%), Postives = 97/145 (66.90%), Query Frame = 0 

Query: 22  LYNSVTPEVVVQLIGFTNAKDMWEATHDFFGVRSRAEEDFLRQTFQTTRKGNSNMEDYLR 81
           LYNS+TP+V +QL+GFTN +D+W+AT DFFGV+SRAEEDFLRQ  QTTRK          
Sbjct: 119 LYNSMTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRK---------- 178

Query: 82  IMKTNADNLGQAESPIPRRALISQVLLGLDEVYNPVIVVIQGKPEISWLDMQSKLLIFEK 141
                                      GLDEVYN VIVVIQGKP+ISWLDMQSKLLIFEK
Sbjct: 179 ---------------------------GLDEVYNLVIVVIQGKPDISWLDMQSKLLIFEK 226

Query: 142 RLKHQNSQ-KNIGNIVQNATINMAQ 166
           RLKHQN+Q KN GNI Q+  +NMAQ
Sbjct: 239 RLKHQNTQKKNTGNITQSPALNMAQ 226

[Close]
BLAST of CsaV3_1G033790 vs. NCBI nr
Match: XP_016902203.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X3 [Cucumis melo])

HSP 1 Score: 155.2 bits (391), Expect = 2.8e-34
Identity = 85/145 (58.62%), Postives = 97/145 (66.90%), Query Frame = 0 

Query: 22  LYNSVTPEVVVQLIGFTNAKDMWEATHDFFGVRSRAEEDFLRQTFQTTRKGNSNMEDYLR 81
           LYNS+TP+V +QL+GFTN +D+W+AT DFFGV+SRAEEDFLRQ  QTTRK          
Sbjct: 119 LYNSMTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRK---------- 178

Query: 82  IMKTNADNLGQAESPIPRRALISQVLLGLDEVYNPVIVVIQGKPEISWLDMQSKLLIFEK 141
                                      GLDEVYN VIVVIQGKP+ISWLDMQSKLLIFEK
Sbjct: 179 ---------------------------GLDEVYNLVIVVIQGKPDISWLDMQSKLLIFEK 226

Query: 142 RLKHQNSQ-KNIGNIVQNATINMAQ 166
           RLKHQN+Q KN GNI Q+  +NMAQ
Sbjct: 239 RLKHQNTQKKNTGNITQSPALNMAQ 226

[Close]
BLAST of CsaV3_1G033790 vs. NCBI nr
Match: XP_016902204.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X4 [Cucumis melo])

HSP 1 Score: 155.2 bits (391), Expect = 2.8e-34
Identity = 85/145 (58.62%), Postives = 97/145 (66.90%), Query Frame = 0 

Query: 22  LYNSVTPEVVVQLIGFTNAKDMWEATHDFFGVRSRAEEDFLRQTFQTTRKGNSNMEDYLR 81
           LYNS+TP+V +QL+GFTN +D+W+AT DFFGV+SRAEEDFLRQ  QTTRK          
Sbjct: 119 LYNSMTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRK---------- 178

Query: 82  IMKTNADNLGQAESPIPRRALISQVLLGLDEVYNPVIVVIQGKPEISWLDMQSKLLIFEK 141
                                      GLDEVYN VIVVIQGKP+ISWLDMQSKLLIFEK
Sbjct: 179 ---------------------------GLDEVYNLVIVVIQGKPDISWLDMQSKLLIFEK 226

Query: 142 RLKHQNSQ-KNIGNIVQNATINMAQ 166
           RLKHQN+Q KN GNI Q+  +NMAQ
Sbjct: 239 RLKHQNTQKKNTGNITQSPALNMAQ 226

[Close]
BLAST of CsaV3_1G033790 vs. TAIR10
Match: AT5G48050.1 (Retrotransposon gag protein (InterPro:IPR005162))

HSP 1 Score: 52.0 bits (123), Expect = 6.0e-07
Identity = 35/128 (27.34%), Postives = 68/128 (53.12%), Query Frame = 0 

Query: 22  LYNSVTPEVVVQLIGF-TNAKDMWEATHDFFGVRSRAEEDFLRQTFQTTRKGNSNMEDYL 81
           +Y ++T  ++  +I     A+D+W +  + F     A         +TT   + ++ +Y 
Sbjct: 78  IYGTITDSLLDTIIKVGCTARDLWLSLENLFRDNKEARALQFENELRTTTIDDLSVHEYC 137

Query: 82  RIMKTNADNLGQAESPIPRRALISQVLLGLDEVYNPVIVVIQGK-PEISWLDMQSKLLIF 141
           + +K+ +D L   +SPI  R L+  +L GL E Y+ ++ VI+ K P  S+ + +S LL+ 
Sbjct: 138 QKLKSLSDLLTNVDSPISDRVLVMHLLNGLTEKYDYILNVIKHKSPFPSFTEARSMLLME 197

Query: 142 EKRLKHQN 148
           E RL +++
Sbjct: 198 ESRLSNKS 205

[Close]
BLAST of CsaV3_1G033790 vs. TAIR10
Match: AT1G34070.1 (Retrotransposon gag protein (InterPro:IPR005162))

HSP 1 Score: 44.7 bits (104), Expect = 9.6e-05
Identity = 37/125 (29.60%), Postives = 61/125 (48.80%), Query Frame = 0 

Query: 22  LYNSVTP-EVVVQLIGFTNAKDMWEATHDFFGVRSRAEEDFLRQTFQTTRKGNSNMEDYL 81
           LY ++TP +     +  + ++D+W    + F     A    L    +T   G+  + DY 
Sbjct: 76  LYGTLTPKQFQGSFVTSSTSRDIWLRIKNQFRNNKDARALRLDSELRTKDIGDMRVADYY 135

Query: 82  RIMKTNADNLGQAESPIPRRALISQVLLGLDEVYNPVIVVIQGK-PEISWLDMQSKLLIF 141
           R MK  AD+L   + P+  R L+  VL GL+  ++ +I VI+ + P  S+ D  + L   
Sbjct: 136 RKMKKLADSLRNVDVPVTDRNLVMYVLNGLNPKFDNIINVIKHRQPFPSFDDAATMLQEE 195

Query: 142 EKRLK 145
           E RLK
Sbjct: 196 EDRLK 200

[Close]
BLAST of CsaV3_1G033790 vs. TrEMBL
Match: tr|A0A0A0LXB7|A0A0A0LXB7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G496800 PE=4 SV=1)

HSP 1 Score: 445.3 bits (1144), Expect = 8.9e-122
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 0 

Query: 1   MTKQPRYQVMPSWKMIQWINKLYNSVTPEVVVQLIGFTNAKDMWEATHDFFGVRSRAEED 60
           MTKQPRYQVMPSWKMIQWINKLYNSVTPEVVVQLIGFTNAKDMWEATHDFFGVRSRAEED
Sbjct: 1   MTKQPRYQVMPSWKMIQWINKLYNSVTPEVVVQLIGFTNAKDMWEATHDFFGVRSRAEED 60

Query: 61  FLRQTFQTTRKGNSNMEDYLRIMKTNADNLGQAESPIPRRALISQVLLGLDEVYNPVIVV 120
           FLRQTFQTTRKGNSNMEDYLRIMKTNADNLGQAESPIPRRALISQVLLGLDEVYNPVIVV
Sbjct: 61  FLRQTFQTTRKGNSNMEDYLRIMKTNADNLGQAESPIPRRALISQVLLGLDEVYNPVIVV 120

Query: 121 IQGKPEISWLDMQSKLLIFEKRLKHQNSQKNIGNIVQNATINMAQSRNNNEPRXXXXXXX 180
           IQGKPEISWLDMQSKLLIFEKRLKHQNSQKNIGNIVQNATINMAQSRNNNEPRXXXXXXX
Sbjct: 121 IQGKPEISWLDMQSKLLIFEKRLKHQNSQKNIGNIVQNATINMAQSRNNNEPRXXXXXXX 180

Query: 181 XXXXXXXXXXXXXGSNNSRGCGRGRGSKSTCQNQPFLSQFFRLTHHRRPNCSHVIKPCQG 240
           XXXXXXXXXXXXXGSNNSRGCGRGRGSKSTCQNQPFLSQFFRLTHHRRPNCSHVIKPCQG
Sbjct: 181 XXXXXXXXXXXXXGSNNSRGCGRGRGSKSTCQNQPFLSQFFRLTHHRRPNCSHVIKPCQG 240

Query: 241 GR 243
           GR
Sbjct: 241 GR 242

[Close]
BLAST of CsaV3_1G033790 vs. TrEMBL
Match: tr|A0A1S4E1U9|A0A1S4E1U9_CUCME (uncharacterized protein LOC107991581 isoform X4 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.8e-34
Identity = 85/145 (58.62%), Postives = 97/145 (66.90%), Query Frame = 0 

Query: 22  LYNSVTPEVVVQLIGFTNAKDMWEATHDFFGVRSRAEEDFLRQTFQTTRKGNSNMEDYLR 81
           LYNS+TP+V +QL+GFTN +D+W+AT DFFGV+SRAEEDFLRQ  QTTRK          
Sbjct: 119 LYNSMTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRK---------- 178

Query: 82  IMKTNADNLGQAESPIPRRALISQVLLGLDEVYNPVIVVIQGKPEISWLDMQSKLLIFEK 141
                                      GLDEVYN VIVVIQGKP+ISWLDMQSKLLIFEK
Sbjct: 179 ---------------------------GLDEVYNLVIVVIQGKPDISWLDMQSKLLIFEK 226

Query: 142 RLKHQNSQ-KNIGNIVQNATINMAQ 166
           RLKHQN+Q KN GNI Q+  +NMAQ
Sbjct: 239 RLKHQNTQKKNTGNITQSPALNMAQ 226

[Close]
BLAST of CsaV3_1G033790 vs. TrEMBL
Match: tr|A0A1S4E1V2|A0A1S4E1V2_CUCME (uncharacterized protein LOC107991581 isoform X3 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.8e-34
Identity = 85/145 (58.62%), Postives = 97/145 (66.90%), Query Frame = 0 

Query: 22  LYNSVTPEVVVQLIGFTNAKDMWEATHDFFGVRSRAEEDFLRQTFQTTRKGNSNMEDYLR 81
           LYNS+TP+V +QL+GFTN +D+W+AT DFFGV+SRAEEDFLRQ  QTTRK          
Sbjct: 119 LYNSMTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRK---------- 178

Query: 82  IMKTNADNLGQAESPIPRRALISQVLLGLDEVYNPVIVVIQGKPEISWLDMQSKLLIFEK 141
                                      GLDEVYN VIVVIQGKP+ISWLDMQSKLLIFEK
Sbjct: 179 ---------------------------GLDEVYNLVIVVIQGKPDISWLDMQSKLLIFEK 226

Query: 142 RLKHQNSQ-KNIGNIVQNATINMAQ 166
           RLKHQN+Q KN GNI Q+  +NMAQ
Sbjct: 239 RLKHQNTQKKNTGNITQSPALNMAQ 226

[Close]
BLAST of CsaV3_1G033790 vs. TrEMBL
Match: tr|A0A1S4E1U6|A0A1S4E1U6_CUCME (uncharacterized protein LOC107991581 isoform X1 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.8e-34
Identity = 85/145 (58.62%), Postives = 97/145 (66.90%), Query Frame = 0 

Query: 22  LYNSVTPEVVVQLIGFTNAKDMWEATHDFFGVRSRAEEDFLRQTFQTTRKGNSNMEDYLR 81
           LYNS+TP+V +QL+GFTN +D+W+AT DFFGV+SRAEEDFLRQ  QTTRK          
Sbjct: 119 LYNSMTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRK---------- 178

Query: 82  IMKTNADNLGQAESPIPRRALISQVLLGLDEVYNPVIVVIQGKPEISWLDMQSKLLIFEK 141
                                      GLDEVYN VIVVIQGKP+ISWLDMQSKLLIFEK
Sbjct: 179 ---------------------------GLDEVYNLVIVVIQGKPDISWLDMQSKLLIFEK 226

Query: 142 RLKHQNSQ-KNIGNIVQNATINMAQ 166
           RLKHQN+Q KN GNI Q+  +NMAQ
Sbjct: 239 RLKHQNTQKKNTGNITQSPALNMAQ 226

[Close]
BLAST of CsaV3_1G033790 vs. TrEMBL
Match: tr|A0A1S4E2K3|A0A1S4E2K3_CUCME (uncharacterized protein LOC107991581 isoform X5 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.8e-34
Identity = 85/145 (58.62%), Postives = 97/145 (66.90%), Query Frame = 0 

Query: 22  LYNSVTPEVVVQLIGFTNAKDMWEATHDFFGVRSRAEEDFLRQTFQTTRKGNSNMEDYLR 81
           LYNS+TP+V +QL+GFTN +D+W+AT DFFGV+SRAEEDFLRQ  QTTRK          
Sbjct: 119 LYNSMTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRK---------- 178

Query: 82  IMKTNADNLGQAESPIPRRALISQVLLGLDEVYNPVIVVIQGKPEISWLDMQSKLLIFEK 141
                                      GLDEVYN VIVVIQGKP+ISWLDMQSKLLIFEK
Sbjct: 179 ---------------------------GLDEVYNLVIVVIQGKPDISWLDMQSKLLIFEK 226

Query: 142 RLKHQNSQ-KNIGNIVQNATINMAQ 166
           RLKHQN+Q KN GNI Q+  +NMAQ
Sbjct: 239 RLKHQNTQKKNTGNITQSPALNMAQ 226

The following BLAST results are available for this feature:
BLAST of CsaV3_1G033790 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN65684.11.4e-121100.00hypothetical protein Csa_1G496800 [Cucumis sativus][more]
XP_022148963.11.6e-3457.78uncharacterized protein LOC111017501 [Momordica charantia][more]
XP_016902197.12.8e-3458.62PREDICTED: uncharacterized protein LOC107991581 isoform X1 [Cucumis melo][more]
XP_016902203.12.8e-3458.62PREDICTED: uncharacterized protein LOC107991581 isoform X3 [Cucumis melo][more]
XP_016902204.12.8e-3458.62PREDICTED: uncharacterized protein LOC107991581 isoform X4 [Cucumis melo][more]
BLAST of CsaV3_1G033790 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G48050.16.0e-0727.34Retrotransposon gag protein (InterPro:IPR005162)[more]
AT1G34070.19.6e-0529.60Retrotransposon gag protein (InterPro:IPR005162)[more]
BLAST of CsaV3_1G033790 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G033790 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LXB7|A0A0A0LXB7_CUCSA8.9e-122100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G496800 PE=4 SV=1[more]
tr|A0A1S4E1U9|A0A1S4E1U9_CUCME1.8e-3458.62uncharacterized protein LOC107991581 isoform X4 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A1S4E1V2|A0A1S4E1V2_CUCME1.8e-3458.62uncharacterized protein LOC107991581 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A1S4E1U6|A0A1S4E1U6_CUCME1.8e-3458.62uncharacterized protein LOC107991581 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A1S4E2K3|A0A1S4E2K3_CUCME1.8e-3458.62uncharacterized protein LOC107991581 isoform X5 OS=Cucumis melo OX=3656 GN=LOC10... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G033790.1CsaV3_1G033790.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 22..145
e-value: 6.3E-12
score: 45.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 167..210
NoneNo IPR availablePANTHERPTHR11439:SF232SUBFAMILY NOT NAMEDcoord: 19..204
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 19..204

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G033790CSPI01G22650Wild cucumber (PI 183967)cpicucB000
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G033790Wax gourdcucwgoB021
CsaV3_1G033790Wax gourdcucwgoB050
CsaV3_1G033790Cucumber (Chinese Long) v3cuccucB029
CsaV3_1G033790Silver-seed gourdcarcucB0336
CsaV3_1G033790Silver-seed gourdcarcucB0337
CsaV3_1G033790Silver-seed gourdcarcucB0364
CsaV3_1G033790Silver-seed gourdcarcucB0472
CsaV3_1G033790Silver-seed gourdcarcucB0765
CsaV3_1G033790Cucumber (Gy14) v2cgybcucB001
CsaV3_1G033790Cucumber (Gy14) v2cgybcucB163
CsaV3_1G033790Cucumber (Gy14) v1cgycucB055
CsaV3_1G033790Cucumber (Gy14) v1cgycucB333
CsaV3_1G033790Cucurbita maxima (Rimu)cmacucB0250
CsaV3_1G033790Cucurbita maxima (Rimu)cmacucB0512
CsaV3_1G033790Cucurbita maxima (Rimu)cmacucB0648
CsaV3_1G033790Cucurbita moschata (Rifu)cmocucB0236
CsaV3_1G033790Cucurbita moschata (Rifu)cmocucB0500
CsaV3_1G033790Cucurbita moschata (Rifu)cmocucB0633
CsaV3_1G033790Cucurbita moschata (Rifu)cmocucB0677
CsaV3_1G033790Cucurbita pepo (Zucchini)cpecucB0331
CsaV3_1G033790Cucurbita pepo (Zucchini)cpecucB0625
CsaV3_1G033790Cucurbita pepo (Zucchini)cpecucB0664
CsaV3_1G033790Cucurbita pepo (Zucchini)cpecucB0875
CsaV3_1G033790Wild cucumber (PI 183967)cpicucB201
CsaV3_1G033790Bottle gourd (USVL1VR-Ls)cuclsiB018
CsaV3_1G033790Bottle gourd (USVL1VR-Ls)cuclsiB031
CsaV3_1G033790Melon (DHL92) v3.5.1cucmeB025
CsaV3_1G033790Melon (DHL92) v3.5.1cucmeB090
CsaV3_1G033790Melon (DHL92) v3.6.1cucmedB023
CsaV3_1G033790Watermelon (Charleston Gray)cucwcgB031
CsaV3_1G033790Watermelon (Charleston Gray)cucwcgB051
CsaV3_1G033790Watermelon (Charleston Gray)cucwcgB065
CsaV3_1G033790Watermelon (97103) v1cucwmB026
CsaV3_1G033790Watermelon (97103) v1cucwmB072
CsaV3_1G033790Watermelon (97103) v1cucwmB075
CsaV3_1G033790Watermelon (97103) v2cucwmbB024
CsaV3_1G033790Watermelon (97103) v2cucwmbB042