CsaV3_1G032060 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G032060
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Glutaredoxin family protein
Location	chr1 : 19062239 .. 19066176 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTGCCTCTAACCTATGCGACAAAATTCATGATGGTGCTGTTGGCTCTAACCTATGCGACAAAATTCATGATGGTGCTATTAGCCTCGTAAACCAAGACCCACGTTGCCATCAGATCTCTTTATCGTACATTTTTCCTTCATCTCTCTCAAGCAAATACTTTTTATATAACTACTTGGGTTTCAACATTTTGAGTCCTATAAAGATGAGAGTTAATTTTAGGGGGAAAATTAGGCTCTAGCTGAAAATTCCAATGATGTTTCTATGCTATTAAACTGAAACTTAAAATTACAAAAAATTTGATAAAATGGAGGCACAAAAAATTAAAAAAATGGAGGCACAAAAAATTAAAAAAAAAAATATATGTATTGAAAAATCAAACGTTTATAATAAATTACATGGCAATATTATTATCATTAAAATGGTTGGTTTTGTTTATATTTTTTCAAAAATAAATAAATAAATAAATAAATTTGAAGATGAATTTTAAAATGCAAAGCAAATTTTTGTAATCAATTACATAACAATATTTATTATCATTATAATTGAAAAGAAAAAAAGGTCAACAGTTAGGTTGACTGAATTCCAAATTTAATCGCCGACGGGAGCAGCCTTATCGAGAAAACCTTATTGCGGCCCGGAAATTTCATTGTATCAATGGCAGCCACGGTGGTGACGATGAGGATGAGGATGATACCGACGGTACGCGCCATGGCTTCATCTTCGCCTGAATCACTCTTCGTCAAGAAAACCATCGCCTCCCACCAGACCGTCATCTTCTCCAAATCCTATTGCCCGTATCTTCATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCGTCAATTGTTTTAATATTGTTGTGTGTGTCCAAGATTGGAAGCAAATTCAGGGTTCATTAATGAATCAAGGATTATTTTCTGTTTCTTTTAAAGTTCAATTGGAATCGTTGAAATTCCTGGTGTTAATTATTTCTAGTTCTAAAATGCAGGTATTGTGAAACGGCAAAAACTGTTTTCAAGGATTTGAACAAAGTTCCTCATGTTGTTGAGTTGGATCAAAGGGGTATTTACTTAATTTCCTTTCTTCTTGTTTTCTCTCTGATTATGAAAAGTAACAGTTACAAGTCTCTTTATTAACTGTTGAATTTGGGTTGCATCTGTTGAAACTGAGTATACATGAGAATCTTGTTCTAGCTTAGTAACTTCAAGTTATGAAAATGTTGGAGTGTACATTTGAGATTTTTGAAGCTCAAGTGTGTGTTAACTAAATGGATTGCCTTTACTATTTTGTTATCTCTTTGCTTCATCTGCTTCTCTTCTTCTTCCATTTCTGTTGTTTTCTGATTCAGTTTCATTATTCAAAGACACTATCTAGGTAAATGATTGAGACAAACTTAAGTGAAGCTTAGAAATAAGAACAGCAAAAACTGTAAGAGAGTAAGAGAAACTGCCTTAGTTTTAGTGCTGCTTTCAACCTCTCACAATGAGGATTACCTGCAGCTGCAATATTTATGTATCAAGTCCTGTGATGTGATCCTTTGTTATATGCTTTGCCAATTCGAAGCTAAACGTTTTGTTTAGGAACATTTTTTCTACTCTCTTTGGCTAATTTTCTCTTTTCAATGTGCAACTCTCAACATGCTCTTCAAAGATGGGGTCTTTTTGGTTTCACCATTCTTGGGTTTTCTTTGTTTGGATTGAATATTTGATTGAGATTCATGGTCTTGGTTTATGATACTATATTAAATTATATAGGATTTCATCTCAAAACCAATTGACAATAAGAGAAGTAATTGTTGTGTCTTATTAAGACCATATAGTCATTTCATCTTTCTAATATGAGATCCTCAAAAAGGAAAGGGGCCAAAAAGTCGCTGATGATAGAGGAAAAGTATGACCGATTAATGTGGCTTGGTTTTGATGCAAATATTGGCAAGAAAGAATCACCAAACTTGCACATGTGGACAAGTTTTTGATTCAGAAACGAGGTGAACTGCAAAATATAATGAACCGCCCCTGATGTCCAAGTTAGTTTAGAGGATTCAGAATGTAGTAAGAGTTAACTTACCCCTTCATTATATAACTGGGATGACCTAGAGTTTTTCCTCTCCTCCTCAGATTAAGATGATCTAGATCTGCCTCTTCTCGCCGGGTCAATCCTGTGGAGTGTGGATAAAAAATTCCACATATCCTTCGGCCAACAACCTTGGCCTGATTGGCCCTGGTTGACTCTCTTTAGCCTTTATAGGCCTTGGGTTTGGTTTTGTCCATTATGAGTCTGTGAGACCCCCAATCATACATACGTATGTTAGGAAGGGTAAGAAGGGAAACTCACCAACATGTAAGGAGAGAGAATGAGTGGGAAATAAAAGAATGTGCAGGTGGGTCCCACTGGGTAGGAAATTGAGGGTGAGTATAAATAGAATGATTGAGAAATAGGGATAGGTATCTTTTTGGTTATCTTTTAGGAAAGGGAGGCAGCAGCAGCTGATAGGAGAGGGGTATCCTTCTTGTGAAGGGTGCAGGTTTATTCTTGTTGTTCATTGTTCTTGTTTTCATTCCTTATTGTAGCTGTAACTTTGGGCTATATATTCTGTCTCTGTTTAGCCCTAGTTGGGTATTTTATTAAAAAGGGTGTAGAATCCTAACAGAGTCCAACTCGTGTTGACTTTGCTTTGAGCACAAATTCAACCGTAACTCTTGAATTATTTTGTTAGTGAGAAATTATCAAAATCTTATTTTATCTTTTGGTAGTTCGTACAGGTTCTTTGTCTTCTTTACTTTAGTTCTCTTCTCTTTCATTTCATTTCAGGATGGGGATAGAATTGAAGCATTGGTATCAATTCCCTAAATGGTCTGGCAAAACTGTTACCATTAGACTAGACACATATATATATCATAACTCTTGTTTCCATGTCTTTCTATATCCTACTGTTCTCTCCATGCTTTTCTATGACTCATAACTTAAAAGTTAGTTTAGTTAACTCCTAGAATTTGGATCTTTATCCCGTAGATGATGGGAGTGCCATTCAAGATGCTTTAAGTGCACTTGTCGGAAGGCACACTGTACCTCAAGTGTTTATAGATGGAAAACACATAGGTGGATCAGATGGTAATTGGCTCTTCCTTGGCAACTTATTGTTTGTAATATATTCTTCTCCAAAGTACTTTCTAACTCATTGAGACCTTGATTTTCAGATACCGTTGAAGCATATGAGAGCGGAGAATTGGGTAAACTCCTGGGTATTGAGGAATAGGATAAAGTGATTCATCTCTTCAATTCTAAGCAGATATCTTTGCACATACAGATTGTATTTTTGCTTGAATCAACTGCTTATTAATTATATGGGATAAATTGACCACTACATGATATTATTTTGTCTTCAAAATAGTTGTCCGTTGTTGGTCTGTTGGGTGCGGATTAACAAATCTACATCCTTTTAGGAATTATTGAATATAATTTTAAAGTATTTTTGCAGTTTCTTCGCATATAAACTATTATCTACGTTGTGACAACATCTACTTGTAATTTCTCACTGTAGTTAAAGCTCCAATCCAACTTTAGGGTCAAACCATCCTGTACTGTTTGGGTCAAACTCACATTTATTAAGGAGCAGAAATGGGACTCTGTTTGGTTGATAGCAGCTTAATTCTTATTAACCTTCTTCTGCTAAGCTTTACTTTTCCTTTTCAACTTCTGAGTTTTATGGTTTATATGCTATGATTAAACTATTGATTTCATAGAGTCATCCATTGTTTTATATACATTTTGACAAAACACCCGATTATGACCCCGTTTTGTT

mRNA sequence

ATGGCAGCCACGGTGGTGACGATGAGGATGAGGATGATACCGACGGTACGCGCCATGGCTTCATCTTCGCCTGAATCACTCTTCGTCAAGAAAACCATCGCCTCCCACCAGACCGTCATCTTCTCCAAATCCTATTGCCCGTATTGTGAAACGGCAAAAACTGTTTTCAAGGATTTGAACAAAGTTCCTCATGTTGTTGAGTTGGATCAAAGGGATGATGGGAGTGCCATTCAAGATGCTTTAAGTGCACTTGTCGGAAGGCACACTGTACCTCAAGTGTTTATAGATGGAAAACACATAGGTGGATCAGATGATACCGTTGAAGCATATGAGAGCGGAGAATTGGGTAAACTCCTGGGTATTGAGGAATAG

Coding sequence (CDS)

ATGGCAGCCACGGTGGTGACGATGAGGATGAGGATGATACCGACGGTACGCGCCATGGCTTCATCTTCGCCTGAATCACTCTTCGTCAAGAAAACCATCGCCTCCCACCAGACCGTCATCTTCTCCAAATCCTATTGCCCGTATTGTGAAACGGCAAAAACTGTTTTCAAGGATTTGAACAAAGTTCCTCATGTTGTTGAGTTGGATCAAAGGGATGATGGGAGTGCCATTCAAGATGCTTTAAGTGCACTTGTCGGAAGGCACACTGTACCTCAAGTGTTTATAGATGGAAAACACATAGGTGGATCAGATGATACCGTTGAAGCATATGAGAGCGGAGAATTGGGTAAACTCCTGGGTATTGAGGAATAG

Protein sequence

MAATVVTMRMRMIPTVRAMASSSPESLFVKKTIASHQTVIFSKSYCPYCETAKTVFKDLNKVPHVVELDQRDDGSAIQDALSALVGRHTVPQVFIDGKHIGGSDDTVEAYESGELGKLLGIEE

Homology

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BLAST of CsaV3_1G032060 vs. NCBI nr
Match: XP_004146345.1 (PREDICTED: glutaredoxin-C4-like [Cucumis sativus] >KGN65503.1 hypothetical protein Csa_1G427530 [Cucumis sativus])

HSP 1 Score: 241.9 bits (616), Expect = 1.2e-60
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MAATVVTMRMRMIPTVRAMASSSPESLFVKKTIASHQTVIFSKSYCPYCETAKTVFKDLN 60
           MAATVVTMRMRMIPTVRAMASSSPESLFVKKTIASHQTVIFSKSYCPYCETAKTVFKDLN
Sbjct: 1   MAATVVTMRMRMIPTVRAMASSSPESLFVKKTIASHQTVIFSKSYCPYCETAKTVFKDLN 60

Query: 61  KVPHVVELDQRDDGSAIQDALSALVGRHTVPQVFIDGKHIGGSDDTVEAYESGELGKLLG 120
           KVPHVVELDQRDDGSAIQDALSALVGRHTVPQVFIDGKHIGGSDDTVEAYESGELGKLLG
Sbjct: 61  KVPHVVELDQRDDGSAIQDALSALVGRHTVPQVFIDGKHIGGSDDTVEAYESGELGKLLG 120

Query: 121 IEE 124
           IEE
Sbjct: 121 IEE 123

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BLAST of CsaV3_1G032060 vs. NCBI nr
Match: XP_008453541.1 (PREDICTED: glutaredoxin-C4-like [Cucumis melo])

HSP 1 Score: 236.1 bits (601), Expect = 6.4e-59
Identity = 120/123 (97.56%), Postives = 121/123 (98.37%), Query Frame = 0


Query: 1   MAATVVTMRMRMIPTVRAMASSSPESLFVKKTIASHQTVIFSKSYCPYCETAKTVFKDLN 60
           MAATVVTMRMRMIPTVRAMASSSPESLFVKKTIASHQTVIFSKSYCPYCETAK VFKDLN
Sbjct: 1   MAATVVTMRMRMIPTVRAMASSSPESLFVKKTIASHQTVIFSKSYCPYCETAKAVFKDLN 60

Query: 61  KVPHVVELDQRDDGSAIQDALSALVGRHTVPQVFIDGKHIGGSDDTVEAYESGELGKLLG 120
           KVPHVVELDQRDDGSAIQDALSALVGRH+VPQVFIDGKHIGGSDDTVEAYESGEL KLLG
Sbjct: 61  KVPHVVELDQRDDGSAIQDALSALVGRHSVPQVFIDGKHIGGSDDTVEAYESGELSKLLG 120

Query: 121 IEE 124
           IEE
Sbjct: 121 IEE 123

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BLAST of CsaV3_1G032060 vs. NCBI nr
Match: XP_022921333.1 (glutaredoxin-C4-like [Cucurbita moschata] >XP_022987348.1 glutaredoxin-C4-like [Cucurbita maxima] >XP_023515442.1 glutaredoxin-C4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 206.8 bits (525), Expect = 4.1e-50
Identity = 108/125 (86.40%), Postives = 112/125 (89.60%), Query Frame = 0


Query: 1   MAATVVTMRMRMIPTVR--AMASSSPESLFVKKTIASHQTVIFSKSYCPYCETAKTVFKD 60
           MAAT+      M+   R  AMASSSPESLFVKKTIASHQ+VIFSKSYCPYCETAK VFKD
Sbjct: 1   MAATLSMRMTTMVSAARVYAMASSSPESLFVKKTIASHQSVIFSKSYCPYCETAKAVFKD 60

Query: 61  LNKVPHVVELDQRDDGSAIQDALSALVGRHTVPQVFIDGKHIGGSDDTVEAYESGELGKL 120
           LNKVPHVVELDQRDDGSAIQDALSALVGR TVPQVFIDGKHIGGSDDTVEAYESGELGKL
Sbjct: 61  LNKVPHVVELDQRDDGSAIQDALSALVGRRTVPQVFIDGKHIGGSDDTVEAYESGELGKL 120

Query: 121 LGIEE 124
           LGI+E
Sbjct: 121 LGIKE 125

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BLAST of CsaV3_1G032060 vs. NCBI nr
Match: XP_022135442.1 (glutaredoxin-C4 [Momordica charantia])

HSP 1 Score: 179.1 bits (453), Expect = 9.2e-42
Identity = 87/104 (83.65%), Postives = 93/104 (89.42%), Query Frame = 0


Query: 20  ASSSPESLFVKKTIASHQTVIFSKSYCPYCETAKTVFKDLNKVPHVVELDQRDDGSAIQD 79
           ASSSPESLFVKKTIASHQ VIFSKSYCPYC  AK VF++L KVPHVVELD+RDDG  IQD
Sbjct: 29  ASSSPESLFVKKTIASHQIVIFSKSYCPYCRRAKAVFEELKKVPHVVELDRRDDGREIQD 88

Query: 80  ALSALVGRHTVPQVFIDGKHIGGSDDTVEAYESGELGKLLGIEE 124
           A+  LVGRHTVPQVFIDGKHIGGSDDTV AYESG+L KLLGI+E
Sbjct: 89  AVGELVGRHTVPQVFIDGKHIGGSDDTVAAYESGKLSKLLGIKE 132

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BLAST of CsaV3_1G032060 vs. NCBI nr
Match: XP_008453540.1 (PREDICTED: glutaredoxin-C4-like [Cucumis melo])

HSP 1 Score: 174.9 bits (442), Expect = 1.7e-40
Identity = 98/135 (72.59%), Postives = 103/135 (76.30%), Query Frame = 0


Query: 1   MAATVVTMRMRMIPTVRA------------MASSSPESLFVKKTIASHQTVIFSKSYCPY 60
           MAATV    MR I T  A             ASSSPES F+K  IASHQ VIFSKSYCPY
Sbjct: 1   MAATV---SMRKILTASAAMVCAVAIASLCRASSSPES-FIKNAIASHQIVIFSKSYCPY 60

Query: 61  CETAKTVFKDLNKVPHVVELDQRDDGSAIQDALSALVGRHTVPQVFIDGKHIGGSDDTVE 120
           C  AK VFK+LNKVPHVVELDQRDDGSA+Q+ALS L GR TVPQVFIDGKHIGGSDDTVE
Sbjct: 61  CRRAKAVFKELNKVPHVVELDQRDDGSALQNALSVLFGRRTVPQVFIDGKHIGGSDDTVE 120

Query: 121 AYESGELGKLLGIEE 124
           AYESGEL KLLGI+E
Sbjct: 121 AYESGELSKLLGIKE 131

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BLAST of CsaV3_1G032060 vs. TAIR10
Match: AT5G20500.1 (Glutaredoxin family protein)

HSP 1 Score: 159.8 bits (403), Expect = 1.1e-39
Identity = 74/102 (72.55%), Postives = 93/102 (91.18%), Query Frame = 0


Query: 20  ASSSPESLFVKKTIASHQTVIFSKSYCPYCETAKTVFKDLNKVPHVVELDQRDDGSAIQD 79
           A+SSPE+ FVKKTI+SH+ VIFSKSYCPYC+ AK+VF++L++VP+VVELD+R+DG +IQ 
Sbjct: 26  AASSPEADFVKKTISSHKIVIFSKSYCPYCKKAKSVFRELDQVPYVVELDEREDGWSIQT 85

Query: 80  ALSALVGRHTVPQVFIDGKHIGGSDDTVEAYESGELGKLLGI 122
           AL  +VGR TVPQVFI+GKH+GGSDDTV+AYESGEL KLLG+
Sbjct: 86  ALGEIVGRRTVPQVFINGKHLGGSDDTVDAYESGELAKLLGV 127

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BLAST of CsaV3_1G032060 vs. TAIR10
Match: AT1G77370.1 (Glutaredoxin family protein)

HSP 1 Score: 117.9 bits (294), Expect = 4.6e-27
Identity = 58/94 (61.70%), Postives = 68/94 (72.34%), Query Frame = 0


Query: 26  SLFVKKTIASHQTVIFSKSYCPYCETAKTVFKDLNKVPHVVELDQRDDGSAIQDALSALV 85
           S FV+  I S++ VIFSKSYCPYC  +K +F  L + P VVELDQR+DG  IQ  L   V
Sbjct: 34  SAFVQNAILSNKIVIFSKSYCPYCLRSKRIFSQLKEEPFVVELDQREDGDQIQYELLEFV 93

Query: 86  GRHTVPQVFIDGKHIGGSDDTVEAYESGELGKLL 120
           GR TVPQVF++GKHIGGSDD   A ESG+L KLL
Sbjct: 94  GRRTVPQVFVNGKHIGGSDDLGAALESGQLQKLL 127

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BLAST of CsaV3_1G032060 vs. TAIR10
Match: AT4G28730.1 (Glutaredoxin family protein)

HSP 1 Score: 90.1 bits (222), Expect = 1.0e-18
Identity = 44/92 (47.83%), Postives = 58/92 (63.04%), Query Frame = 0


Query: 29  VKKTIASHQTVIFSKSYCPYCETAKTVFKDLNKVPHVVELDQ-RDDGSAIQDALSALVGR 88
           ++KT+  +  VI+SK++C YC   KT+FK L   P VVELDQ    G  +Q  L  L G+
Sbjct: 73  IRKTVTENTVVIYSKTWCSYCTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERLTGQ 132

Query: 89  HTVPQVFIDGKHIGGSDDTVEAYESGELGKLL 120
           HTVP VF+ GKHIGG  DTV+    G+L  +L
Sbjct: 133 HTVPNVFVCGKHIGGCTDTVKLNRKGDLELML 164

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BLAST of CsaV3_1G032060 vs. TAIR10
Match: AT5G63030.1 (Thioredoxin superfamily protein)

HSP 1 Score: 84.7 bits (208), Expect = 4.3e-17
Identity = 40/90 (44.44%), Postives = 55/90 (61.11%), Query Frame = 0


Query: 30  KKTIASHQTVIFSKSYCPYCETAKTVFKDLNKVPHVVELDQRDDGSAIQDALSALVGRHT 89
           K+ ++++  V+FSK+YC YC+  K +   L     V+ELD+  DG  IQ ALS   G+ T
Sbjct: 23  KEIVSAYPVVVFSKTYCGYCQRVKQLLTQLGATFKVLELDEMSDGGEIQSALSEWTGQTT 82

Query: 90  VPQVFIDGKHIGGSDDTVEAYESGELGKLL 120
           VP VFI G HIGG D  +E  + G+L  LL
Sbjct: 83  VPNVFIKGNHIGGCDRVMETNKQGKLVPLL 112

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BLAST of CsaV3_1G032060 vs. TAIR10
Match: AT2G20270.2 (Thioredoxin superfamily protein)

HSP 1 Score: 80.5 bits (197), Expect = 8.1e-16
Identity = 43/119 (36.13%), Postives = 61/119 (51.26%), Query Frame = 0


Query: 29  VKKTIASHQTVIFSKSYCPYCETAKTVFKDLNKVPHVVELDQ------------------ 88
           VK T+A +  V++SK++C Y    K++FK L   P VVELDQ                  
Sbjct: 78  VKTTVAENPVVVYSKTWCSYSSQVKSLFKSLQVEPLVVELDQLVSLGKTSLPHDIGLKHL 137

Query: 89  ----------RDDGSAIQDALSALVGRHTVPQVFIDGKHIGGSDDTVEAYESGELGKLL 120
                       +GS +Q+ L  + G++TVP VFI GKHIGG  DT++ +  GEL  +L
Sbjct: 138 QKFWWFLAFPGSEGSQLQNVLEKITGQYTVPNVFIGGKHIGGCSDTLQLHNKGELEAIL 196

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BLAST of CsaV3_1G032060 vs. Swiss-Prot
Match: sp|Q8LFQ6|GRXC4_ARATH (Glutaredoxin-C4 OS=Arabidopsis thaliana OX=3702 GN=GRXC4 PE=2 SV=2)

HSP 1 Score: 159.8 bits (403), Expect = 1.9e-38
Identity = 74/102 (72.55%), Postives = 93/102 (91.18%), Query Frame = 0


Query: 20  ASSSPESLFVKKTIASHQTVIFSKSYCPYCETAKTVFKDLNKVPHVVELDQRDDGSAIQD 79
           A+SSPE+ FVKKTI+SH+ VIFSKSYCPYC+ AK+VF++L++VP+VVELD+R+DG +IQ 
Sbjct: 26  AASSPEADFVKKTISSHKIVIFSKSYCPYCKKAKSVFRELDQVPYVVELDEREDGWSIQT 85

Query: 80  ALSALVGRHTVPQVFIDGKHIGGSDDTVEAYESGELGKLLGI 122
           AL  +VGR TVPQVFI+GKH+GGSDDTV+AYESGEL KLLG+
Sbjct: 86  ALGEIVGRRTVPQVFINGKHLGGSDDTVDAYESGELAKLLGV 127

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BLAST of CsaV3_1G032060 vs. Swiss-Prot
Match: sp|Q0DAE4|GRXC8_ORYSJ (Glutaredoxin-C8 OS=Oryza sativa subsp. japonica OX=39947 GN=GRXC8 PE=2 SV=2)

HSP 1 Score: 143.7 bits (361), Expect = 1.4e-33
Identity = 70/99 (70.71%), Postives = 80/99 (80.81%), Query Frame = 0


Query: 26  SLFVKKTIASHQTVIFSKSYCPYCETAKTVFK--DLNKVPHVVELDQRDDGSAIQDALSA 85
           S FVK T+ +H  VIFSKSYCPYC  AK VFK  +L K P+VVELDQR+DG  IQDALS 
Sbjct: 33  SSFVKSTVKAHDVVIFSKSYCPYCRRAKAVFKELELKKEPYVVELDQREDGWEIQDALSD 92

Query: 86  LVGRHTVPQVFIDGKHIGGSDDTVEAYESGELGKLLGIE 123
           +VGR TVPQVF+ GKH+GGSDDTVEAYESG+L KLL I+
Sbjct: 93  MVGRRTVPQVFVHGKHLGGSDDTVEAYESGKLAKLLNID 131

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BLAST of CsaV3_1G032060 vs. Swiss-Prot
Match: sp|Q6H628|GRXS6_ORYSJ (Monothiol glutaredoxin-S6 OS=Oryza sativa subsp. japonica OX=39947 GN=GRXS6 PE=2 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 4.4e-27
Identity = 59/103 (57.28%), Postives = 77/103 (74.76%), Query Frame = 0


Query: 18  AMASSSPESLFVKKTIASHQTVIFSKSYCPYCETAKTVFKDLNKVPHVVELDQRDDGSAI 77
           A A+ SP S FV+  I S++  IFSK+YCPY   AK +F+DL + P++VELD R+DG  I
Sbjct: 24  AAATRSP-SAFVQNAIYSNRITIFSKTYCPYSMRAKRIFRDLKENPYIVELDLREDGREI 83

Query: 78  QDALSALVGRHTVPQVFIDGKHIGGSDDTVEAYESGELGKLLG 121
           Q  L  LVGRHTVPQVF++G+H+GGSDDT  A+ +G+L KLLG
Sbjct: 84  QSVLLDLVGRHTVPQVFVNGQHVGGSDDTANAHSNGQLQKLLG 125

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BLAST of CsaV3_1G032060 vs. Swiss-Prot
Match: sp|Q9FVX1|GRXC3_ARATH (Glutaredoxin-C3 OS=Arabidopsis thaliana OX=3702 GN=GRXC3 PE=2 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 8.3e-26
Identity = 58/94 (61.70%), Postives = 68/94 (72.34%), Query Frame = 0


Query: 26  SLFVKKTIASHQTVIFSKSYCPYCETAKTVFKDLNKVPHVVELDQRDDGSAIQDALSALV 85
           S FV+  I S++ VIFSKSYCPYC  +K +F  L + P VVELDQR+DG  IQ  L   V
Sbjct: 34  SAFVQNAILSNKIVIFSKSYCPYCLRSKRIFSQLKEEPFVVELDQREDGDQIQYELLEFV 93

Query: 86  GRHTVPQVFIDGKHIGGSDDTVEAYESGELGKLL 120
           GR TVPQVF++GKHIGGSDD   A ESG+L KLL
Sbjct: 94  GRRTVPQVFVNGKHIGGSDDLGAALESGQLQKLL 127

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BLAST of CsaV3_1G032060 vs. Swiss-Prot
Match: sp|B7ZFT1|GLRX1_RHIID (Glutaredoxin-1 OS=Rhizophagus irregularis (strain DAOM 181602 / DAOM 197198 / MUCL 43194) OX=747089 GN=GRX1 PE=2 SV=3)

HSP 1 Score: 95.5 bits (236), Expect = 4.4e-19
Identity = 41/91 (45.05%), Postives = 62/91 (68.13%), Query Frame = 0


Query: 29  VKKTIASHQTVIFSKSYCPYCETAKTVFKDLNKVPHVVELDQRDDGSAIQDALSALVGRH 88
           V+K I ++  ++FSKS+CPYC+ AK   K+LN  P + ELD+  +G AIQD L     ++
Sbjct: 8   VEKLIQTNPVMMFSKSFCPYCKKAKATLKELNVEPGICELDEDSEGRAIQDYLKEKTSQN 67

Query: 89  TVPQVFIDGKHIGGSDDTVEAYESGELGKLL 120
           TVP +FI G+H+GG DD + A ++G L K++
Sbjct: 68  TVPNIFIKGQHVGGCDDLLAAKDNGSLSKMI 98

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BLAST of CsaV3_1G032060 vs. TrEMBL
Match: tr|A0A0A0LUU4|A0A0A0LUU4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G427530 PE=4 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 7.7e-61
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MAATVVTMRMRMIPTVRAMASSSPESLFVKKTIASHQTVIFSKSYCPYCETAKTVFKDLN 60
           MAATVVTMRMRMIPTVRAMASSSPESLFVKKTIASHQTVIFSKSYCPYCETAKTVFKDLN
Sbjct: 1   MAATVVTMRMRMIPTVRAMASSSPESLFVKKTIASHQTVIFSKSYCPYCETAKTVFKDLN 60

Query: 61  KVPHVVELDQRDDGSAIQDALSALVGRHTVPQVFIDGKHIGGSDDTVEAYESGELGKLLG 120
           KVPHVVELDQRDDGSAIQDALSALVGRHTVPQVFIDGKHIGGSDDTVEAYESGELGKLLG
Sbjct: 61  KVPHVVELDQRDDGSAIQDALSALVGRHTVPQVFIDGKHIGGSDDTVEAYESGELGKLLG 120

Query: 121 IEE 124
           IEE
Sbjct: 121 IEE 123

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BLAST of CsaV3_1G032060 vs. TrEMBL
Match: tr|A0A1S3BVX6|A0A1S3BVX6_CUCME (glutaredoxin-C4-like OS=Cucumis melo OX=3656 GN=LOC103494224 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 4.2e-59
Identity = 120/123 (97.56%), Postives = 121/123 (98.37%), Query Frame = 0


Query: 1   MAATVVTMRMRMIPTVRAMASSSPESLFVKKTIASHQTVIFSKSYCPYCETAKTVFKDLN 60
           MAATVVTMRMRMIPTVRAMASSSPESLFVKKTIASHQTVIFSKSYCPYCETAK VFKDLN
Sbjct: 1   MAATVVTMRMRMIPTVRAMASSSPESLFVKKTIASHQTVIFSKSYCPYCETAKAVFKDLN 60

Query: 61  KVPHVVELDQRDDGSAIQDALSALVGRHTVPQVFIDGKHIGGSDDTVEAYESGELGKLLG 120
           KVPHVVELDQRDDGSAIQDALSALVGRH+VPQVFIDGKHIGGSDDTVEAYESGEL KLLG
Sbjct: 61  KVPHVVELDQRDDGSAIQDALSALVGRHSVPQVFIDGKHIGGSDDTVEAYESGELSKLLG 120

Query: 121 IEE 124
           IEE
Sbjct: 121 IEE 123

[Close]

BLAST of CsaV3_1G032060 vs. TrEMBL
Match: tr|A0A1S3BXN4|A0A1S3BXN4_CUCME (glutaredoxin-C4-like OS=Cucumis melo OX=3656 GN=LOC103494223 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.2e-40
Identity = 98/135 (72.59%), Postives = 103/135 (76.30%), Query Frame = 0


Query: 1   MAATVVTMRMRMIPTVRA------------MASSSPESLFVKKTIASHQTVIFSKSYCPY 60
           MAATV    MR I T  A             ASSSPES F+K  IASHQ VIFSKSYCPY
Sbjct: 1   MAATV---SMRKILTASAAMVCAVAIASLCRASSSPES-FIKNAIASHQIVIFSKSYCPY 60

Query: 61  CETAKTVFKDLNKVPHVVELDQRDDGSAIQDALSALVGRHTVPQVFIDGKHIGGSDDTVE 120
           C  AK VFK+LNKVPHVVELDQRDDGSA+Q+ALS L GR TVPQVFIDGKHIGGSDDTVE
Sbjct: 61  CRRAKAVFKELNKVPHVVELDQRDDGSALQNALSVLFGRRTVPQVFIDGKHIGGSDDTVE 120

Query: 121 AYESGELGKLLGIEE 124
           AYESGEL KLLGI+E
Sbjct: 121 AYESGELSKLLGIKE 131

[Close]

BLAST of CsaV3_1G032060 vs. TrEMBL
Match: tr|A0A0A0LXH3|A0A0A0LXH3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G427520 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 9.7e-40
Identity = 96/135 (71.11%), Postives = 104/135 (77.04%), Query Frame = 0


Query: 1   MAATVVTMRMRMIPTVRAM------------ASSSPESLFVKKTIASHQTVIFSKSYCPY 60
           MAATV    MR I T  A             ASSSPES F+K TIASHQ VIFSKSYCPY
Sbjct: 1   MAATV---SMRKILTASAAMVCAVAIASLCGASSSPES-FIKNTIASHQIVIFSKSYCPY 60

Query: 61  CETAKTVFKDLNKVPHVVELDQRDDGSAIQDALSALVGRHTVPQVFIDGKHIGGSDDTVE 120
           C  AK VFK+L+KVPHVVELDQRDDGS++Q+ALS L GR TVPQVFIDGKHIGGSDDT+E
Sbjct: 61  CRRAKAVFKELHKVPHVVELDQRDDGSSLQNALSVLFGRRTVPQVFIDGKHIGGSDDTLE 120

Query: 121 AYESGELGKLLGIEE 124
           AYESGEL KLLGI+E
Sbjct: 121 AYESGELRKLLGIKE 131

[Close]

BLAST of CsaV3_1G032060 vs. TrEMBL
Match: tr|A9PBC3|A9PBC3_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_018G133400v3 PE=2 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 2.8e-39
Identity = 85/119 (71.43%), Postives = 98/119 (82.35%), Query Frame = 0


Query: 3   ATVVTMRMRMIPTVRAMASSSPESLFVKKTIASHQTVIFSKSYCPYCETAKTVFKDLNKV 62
           AT VT  + ++      A+ SPE+ FVKKTI+SHQ VIFSKSYCPYC+ AK VFK+LN+ 
Sbjct: 12  ATAVT--LTVLAASLTWAAGSPEATFVKKTISSHQIVIFSKSYCPYCKKAKGVFKELNQT 71

Query: 63  PHVVELDQRDDGSAIQDALSALVGRHTVPQVFIDGKHIGGSDDTVEAYESGELGKLLGI 122
           PHVVELDQR+DG  IQDA+S +VGR TVPQVFIDGKHIGGSDDTVEAYESGEL KLLG+
Sbjct: 72  PHVVELDQREDGHDIQDAMSEIVGRRTVPQVFIDGKHIGGSDDTVEAYESGELAKLLGV 128

The following BLAST results are available for this feature:

BLAST of CsaV3_1G032060 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146345.1	1.2e-60	100.00	PREDICTED: glutaredoxin-C4-like [Cucumis sativus] >KGN65503.1 hypothetical prote...	[more]
XP_008453541.1	6.4e-59	97.56	PREDICTED: glutaredoxin-C4-like [Cucumis melo]	[more]
XP_022921333.1	4.1e-50	86.40	glutaredoxin-C4-like [Cucurbita moschata] >XP_022987348.1 glutaredoxin-C4-like [...	[more]
XP_022135442.1	9.2e-42	83.65	glutaredoxin-C4 [Momordica charantia]	[more]
XP_008453540.1	1.7e-40	72.59	PREDICTED: glutaredoxin-C4-like [Cucumis melo]	[more]

BLAST of CsaV3_1G032060 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G20500.1	1.1e-39	72.55	Glutaredoxin family protein	[more]
AT1G77370.1	4.6e-27	61.70	Glutaredoxin family protein	[more]
AT4G28730.1	1.0e-18	47.83	Glutaredoxin family protein	[more]
AT5G63030.1	4.3e-17	44.44	Thioredoxin superfamily protein	[more]
AT2G20270.2	8.1e-16	36.13	Thioredoxin superfamily protein	[more]

BLAST of CsaV3_1G032060 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8LFQ6\|GRXC4_ARATH	1.9e-38	72.55	Glutaredoxin-C4 OS=Arabidopsis thaliana OX=3702 GN=GRXC4 PE=2 SV=2	[more]
sp\|Q0DAE4\|GRXC8_ORYSJ	1.4e-33	70.71	Glutaredoxin-C8 OS=Oryza sativa subsp. japonica OX=39947 GN=GRXC8 PE=2 SV=2	[more]
sp\|Q6H628\|GRXS6_ORYSJ	4.4e-27	57.28	Monothiol glutaredoxin-S6 OS=Oryza sativa subsp. japonica OX=39947 GN=GRXS6 PE=2...	[more]
sp\|Q9FVX1\|GRXC3_ARATH	8.3e-26	61.70	Glutaredoxin-C3 OS=Arabidopsis thaliana OX=3702 GN=GRXC3 PE=2 SV=1	[more]
sp\|B7ZFT1\|GLRX1_RHIID	4.4e-19	45.05	Glutaredoxin-1 OS=Rhizophagus irregularis (strain DAOM 181602 / DAOM 197198 / MU...	[more]

BLAST of CsaV3_1G032060 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LUU4\|A0A0A0LUU4_CUCSA	7.7e-61	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G427530 PE=4 SV=1	[more]
tr\|A0A1S3BVX6\|A0A1S3BVX6_CUCME	4.2e-59	97.56	glutaredoxin-C4-like OS=Cucumis melo OX=3656 GN=LOC103494224 PE=4 SV=1	[more]
tr\|A0A1S3BXN4\|A0A1S3BXN4_CUCME	1.2e-40	72.59	glutaredoxin-C4-like OS=Cucumis melo OX=3656 GN=LOC103494223 PE=4 SV=1	[more]
tr\|A0A0A0LXH3\|A0A0A0LXH3_CUCSA	9.7e-40	71.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G427520 PE=4 SV=1	[more]
tr\|A9PBC3\|A9PBC3_POPTR	2.8e-39	71.43	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_018G133400v3 PE=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0015035	protein disulfide oxidoreductase activity
GO:0009055	electron carrier activity

Vocabulary: **Biological Process**
Term	Definition
GO:0045454	cell redox homeostasis

Vocabulary: **INTERPRO**
Term	Definition
IPR036249	Thioredoxin-like_sf
IPR011767	GLR_AS
IPR011899	Glutaredoxin_euk/vir
IPR002109	Glutaredoxin
IPR014025	Glutaredoxin_subgr

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045454	cell redox homeostasis
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0009055	electron carrier activity
molecular_function	GO:0015035	protein disulfide oxidoreductase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G032060.1	CsaV3_1G032060.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014025	Glutaredoxin subgroup	PRINTS	PR00160	GLUTAREDOXIN	coord: 38..56 score: 42.54 coord: 97..110 score: 43.75 coord: 83..96 score: 50.3
IPR002109	Glutaredoxin	PFAM	PF00462	Glutaredoxin	coord: 39..100 e-value: 2.3E-18 score: 66.1
IPR002109	Glutaredoxin	PROSITE	PS51354	GLUTAREDOXIN_2	coord: 26..123 score: 22.347
None	No IPR available	GENE3D	G3DSA:3.40.30.10		coord: 26..122 e-value: 1.3E-35 score: 123.6
None	No IPR available	PANTHER	PTHR10168:SF116	GLUTAREDOXIN-C3	coord: 5..120
None	No IPR available	PANTHER	PTHR10168	GLUTAREDOXIN	coord: 5..120
None	No IPR available	CDD	cd03419	GRX_GRXh_1_2_like	coord: 39..118 e-value: 3.48122E-43 score: 137.671
IPR011899	Glutaredoxin, eukaryotic/virial	TIGRFAM	TIGR02180	TIGR02180	coord: 39..118 e-value: 1.3E-29 score: 100.2
IPR011767	Glutaredoxin active site	PROSITE	PS00195	GLUTAREDOXIN_1	coord: 40..55
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	SSF52833	Thioredoxin-like	coord: 29..119

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G032060	Watermelon (97103) v2	cucwmbB064
CsaV3_1G032060	Wax gourd	cucwgoB110
CsaV3_1G032060	Silver-seed gourd	carcucB0626
CsaV3_1G032060	Silver-seed gourd	carcucB0826
CsaV3_1G032060	Cucumber (Gy14) v2	cgybcucB001
CsaV3_1G032060	Cucumber (Gy14) v1	cgycucB432
CsaV3_1G032060	Cucurbita maxima (Rimu)	cmacucB0068
CsaV3_1G032060	Cucurbita maxima (Rimu)	cmacucB0113
CsaV3_1G032060	Cucurbita moschata (Rifu)	cmocucB0055
CsaV3_1G032060	Cucurbita moschata (Rifu)	cmocucB0101
CsaV3_1G032060	Cucurbita pepo (Zucchini)	cpecucB0430
CsaV3_1G032060	Cucurbita pepo (Zucchini)	cpecucB0797
CsaV3_1G032060	Wild cucumber (PI 183967)	cpicucB000
CsaV3_1G032060	Bottle gourd (USVL1VR-Ls)	cuclsiB069
CsaV3_1G032060	Melon (DHL92) v3.5.1	cucmeB043
CsaV3_1G032060	Melon (DHL92) v3.6.1	cucmedB040
CsaV3_1G032060	Watermelon (Charleston Gray)	cucwcgB075
CsaV3_1G032060	Watermelon (97103) v1	cucwmB092