CsaV3_1G031630 (gene) Cucumber (Chinese Long) v3

NameCsaV3_1G031630
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionOSBP(Oxysterol binding protein)-related protein 4B, putative
Locationchr1 : 18699447 .. 18700339 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCAAATTAGGAGAGTATATCAAAGGGGGAGACATTCAAGGGATTCTAAAAAGTAAAATAAAAATACTTCCTTAATTATCTTAACAAACATCTAAAATGACTACTTTATTCACTTCCCATTTACATCCCAAACTCTCCTCATTATTTACCCTCAAATTTTTACTTTCAAAATATTCTCAACACAAAAAGCTATGGCAGCAAAAGATCACACTCTTCATCGTCTCTCTGAAAAACCCTTCTCATTACTTCAAGCAAATCAATTATTTGTCCACAAAATCCTTTCCAGAAACTCGTCATTTGGCCGCTCTGCCCGTCTCCCTGCCTGTGGCCTCCCCGGTCAAGTCCCTTTCAATTGGGAAGCCCAGCCCGGCCTCCCTAAAAACCAACCTTCGGATAATCCCCCGCCAGTTAAACTCCCTCCGCCCTCATCCTCCGCCTTGGGCCTCTCCAAAACTCCTCACGTAGTCCCTAAGCAAGCGCCGGTAAAGATTTGGTTTTGGAATAAGCAGAGGAGAAAATCGAGGCGTGCAGTTAAGAAAAGCGGTGCGCTTGGATCGTCCTCACCGAGACGACATGTCGATCGTGACAGTGAGTTTTGTAGAAAAAAATCAAACGACGAGTCGTCGTCGTCCTCGTCTTTGTCATGTATTTCTTATTCCATGTCTTCGAATTCTTCTTCGGCTTCCTCGTCAGATCGTTACAACAACCGACGGCGCTACAAACTCGGTAGCCTTGCTAAAGAGTTCATACGGTGGGCCTTTTAATTAAGATTATTATCATTACTATTATTATTATCATTATCATCATCATTATAAATTTCTCAAGTTCTTATCTTCGGAATAATGTAATTTAATTTTTGTGTATTCTTGTCGAATGGAAAATTTTTGTATTGG

mRNA sequence

ATGGCAGCAAAAGATCACACTCTTCATCGTCTCTCTGAAAAACCCTTCTCATTACTTCAAGCAAATCAATTATTTGTCCACAAAATCCTTTCCAGAAACTCGTCATTTGGCCGCTCTGCCCGTCTCCCTGCCTGTGGCCTCCCCGGTCAAGTCCCTTTCAATTGGGAAGCCCAGCCCGGCCTCCCTAAAAACCAACCTTCGGATAATCCCCCGCCAGTTAAACTCCCTCCGCCCTCATCCTCCGCCTTGGGCCTCTCCAAAACTCCTCACGTAGTCCCTAAGCAAGCGCCGGTAAAGATTTGGTTTTGGAATAAGCAGAGGAGAAAATCGAGGCGTGCAGTTAAGAAAAGCGGTGCGCTTGGATCGTCCTCACCGAGACGACATGTCGATCGTGACAGTGAGTTTTGTAGAAAAAAATCAAACGACGAGTCGTCGTCGTCCTCGTCTTTGTCATGTATTTCTTATTCCATGTCTTCGAATTCTTCTTCGGCTTCCTCGTCAGATCGTTACAACAACCGACGGCGCTACAAACTCGGTAGCCTTGCTAAAGAGTTCATACGGTGGGCCTTTTAA

Coding sequence (CDS)

ATGGCAGCAAAAGATCACACTCTTCATCGTCTCTCTGAAAAACCCTTCTCATTACTTCAAGCAAATCAATTATTTGTCCACAAAATCCTTTCCAGAAACTCGTCATTTGGCCGCTCTGCCCGTCTCCCTGCCTGTGGCCTCCCCGGTCAAGTCCCTTTCAATTGGGAAGCCCAGCCCGGCCTCCCTAAAAACCAACCTTCGGATAATCCCCCGCCAGTTAAACTCCCTCCGCCCTCATCCTCCGCCTTGGGCCTCTCCAAAACTCCTCACGTAGTCCCTAAGCAAGCGCCGGTAAAGATTTGGTTTTGGAATAAGCAGAGGAGAAAATCGAGGCGTGCAGTTAAGAAAAGCGGTGCGCTTGGATCGTCCTCACCGAGACGACATGTCGATCGTGACAGTGAGTTTTGTAGAAAAAAATCAAACGACGAGTCGTCGTCGTCCTCGTCTTTGTCATGTATTTCTTATTCCATGTCTTCGAATTCTTCTTCGGCTTCCTCGTCAGATCGTTACAACAACCGACGGCGCTACAAACTCGGTAGCCTTGCTAAAGAGTTCATACGGTGGGCCTTTTAA

Protein sequence

MAAKDHTLHRLSEKPFSLLQANQLFVHKILSRNSSFGRSARLPACGLPGQVPFNWEAQPGLPKNQPSDNPPPVKLPPPSSSALGLSKTPHVVPKQAPVKIWFWNKQRRKSRRAVKKSGALGSSSPRRHVDRDSEFCRKKSNDESSSSSSLSCISYSMSSNSSSASSSDRYNNRRRYKLGSLAKEFIRWAF
BLAST of CsaV3_1G031630 vs. NCBI nr
Match: KGN65459.1 (hypothetical protein Csa_1G423170 [Cucumis sativus])

HSP 1 Score: 296.6 bits (758), Expect = 6.1e-77
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0

Query: 1   MAAKDHTLHRLSEKPFSLLQANQLFVHKILSRNSSFGRSARLPACGLPGQVPFNWEAQPG 60
           MAAKDHTLHRLSEKPFSLLQANQLFVHKILSRNSSFGRSARLPACGLPGQVPFNWEAQPG
Sbjct: 1   MAAKDHTLHRLSEKPFSLLQANQLFVHKILSRNSSFGRSARLPACGLPGQVPFNWEAQPG 60

Query: 61  LPKNQPSDNPPPVKLPPPSSSALGLSKTPHVVPKQAPVKIWFWNKQRRKSRRAVKKSGAL 120
           LPKNQPSDNPPPVKLPPPSSSALGLSKTPHVVPKQAPVKIWFWNKQRRKSRRAVKKSGAL
Sbjct: 61  LPKNQPSDNPPPVKLPPPSSSALGLSKTPHVVPKQAPVKIWFWNKQRRKSRRAVKKSGAL 120

Query: 121 GSSSPRRHVDRDSEFCRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYKLGS 180
           GSSSPRRHVDRDSEFCRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYKLGS
Sbjct: 121 GSSSPRRHVDRDSEFCRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYKLGS 180

Query: 181 LAKEFIRWAF 191
           LAKEFIRWAF
Sbjct: 181 LAKEFIRWAF 190

BLAST of CsaV3_1G031630 vs. NCBI nr
Match: XP_022987494.1 (uncharacterized protein LOC111485037 [Cucurbita maxima])

HSP 1 Score: 171.4 bits (433), Expect = 3.0e-39
Identity = 139/188 (73.94%), Postives = 151/188 (80.32%), Query Frame = 0

Query: 5   DHTLHRLSEKPFSLLQANQLFVHKILSRNSSFGRSARLPACGLPGQVPFNWEAQPGLPKN 64
           DH LH  SE PFSLLQAN+LFVHKILSRNSS GRSARLPAC LPGQ+PF WEAQPGLPK+
Sbjct: 4   DHRLHP-SENPFSLLQANELFVHKILSRNSSVGRSARLPACRLPGQIPFIWEAQPGLPKD 63

Query: 65  QPSDNPPPVKLPPPSSSALGLSKTPHVVPK-QAPVKIWFWNKQRRKSRRAVKKSGALGSS 124
           +PS+N  P   PPP +   G SKTPH VPK Q   KIW W K R+K R  VKK+GA GSS
Sbjct: 64  KPSENLHP---PPPPNYVDGTSKTPHQVPKQQEAAKIWSWMKPRKKLRNVVKKNGAFGSS 123

Query: 125 SPRR-HVDRDSEFCRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYKLGSLA 184
           S  R HV+++SEFCRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   KL SLA
Sbjct: 124 SSSRPHVNQESEFCRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS--KLSSLA 183

Query: 185 KEFIRWAF 191
           K F+RWAF
Sbjct: 184 KGFLRWAF 185

BLAST of CsaV3_1G031630 vs. NCBI nr
Match: PON79564.1 (hypothetical protein TorRG33x02_235730 [Trema orientalis])

HSP 1 Score: 73.6 bits (179), Expect = 8.4e-10
Identity = 54/129 (41.86%), Postives = 69/129 (53.49%), Query Frame = 0

Query: 8   LHRLSEKP-FSLLQANQLFVHKILSRNSSFG---RSARLPACGLPGQVPFNWEAQPGLPK 67
           L + SEKP  S+LQAN+LFV KILSRNSS G    S  L       +VPF WE+QPG PK
Sbjct: 5   LRKTSEKPSVSVLQANELFVKKILSRNSSIGDNTTSHHLSNFKTRAEVPFKWESQPGKPK 64

Query: 68  NQP-------SDNPPPVKLPPPSSSALGLSKTPHVVPKQAPVKIWFWNK-QRRKSRRAVK 125
           + P       + +PP V LP P+  A G+   P  V         FW K  +R+ ++ VK
Sbjct: 65  DPPKGTAHQLTGSPPAVDLPQPAVVARGVHAPPPAVAPNVSGGRPFWKKLGKRRQKQVVK 124

BLAST of CsaV3_1G031630 vs. NCBI nr
Match: PON75928.1 (hypothetical protein PanWU01x14_038790 [Parasponia andersonii])

HSP 1 Score: 70.5 bits (171), Expect = 7.1e-09
Identity = 53/135 (39.26%), Postives = 70/135 (51.85%), Query Frame = 0

Query: 8   LHRLSEKP-FSLLQANQLFVHKILSRNSSFG---RSARLPACGLPGQVPFNWEAQPGLPK 67
           L + SEKP  S+LQAN+LFV KILSRNSS G    S  L       +VPF WE+QPG PK
Sbjct: 5   LRKTSEKPSVSVLQANELFVKKILSRNSSIGDNTTSHHLSNFKTRAEVPFKWESQPGKPK 64

Query: 68  NQP-------SDNPPPVKLPPPSSSALGLSKTPHVVPKQAPVKIWFWNK-QRRKSRRAVK 127
           + P       + +PP V  P  +  A G+   P  V         FW K  +R+ ++ V+
Sbjct: 65  DPPKGTAHQFTGSPPAVDQPQSAVVARGVHAPPRPVAPNVSGGRRFWKKLSKRRQKQVVE 124

Query: 128 KSGALGSSSPRRHVD 131
           K    G S+  R +D
Sbjct: 125 KVEPAGPSAATRGLD 139

BLAST of CsaV3_1G031630 vs. NCBI nr
Match: XP_018831087.1 (PREDICTED: uncharacterized protein LOC108998834 [Juglans regia])

HSP 1 Score: 69.7 bits (169), Expect = 1.2e-08
Identity = 45/104 (43.27%), Postives = 60/104 (57.69%), Query Frame = 0

Query: 14  KPFSLLQANQLFVHKILSRNSSFGRSARLPACGLPGQVPFNWEAQPGLPKNQPSDNPPPV 73
           K +SLLQ ++ F HKILS NSS G S+R+        VPF WE QPG PK+ P+D   P 
Sbjct: 12  KRYSLLQGDE-FNHKILSGNSSVGYSSRIYYHRSNEGVPFKWEMQPGTPKDPPNDEGIPP 71

Query: 74  KLPPPSSSALGLSKTPHVVPKQAPVKIW----FWNKQRRKSRRA 114
             PPP+  +LGL K P +  +    K W    FWNK ++  +R+
Sbjct: 72  LSPPPAVLSLGLPK-PCIKVQPNKAKTWPRIRFWNKSKKNKQRS 113

BLAST of CsaV3_1G031630 vs. TAIR10
Match: AT4G25845.1 (BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 4B (TAIR:AT4G25850.2))

HSP 1 Score: 41.2 bits (95), Expect = 8.4e-04
Identity = 28/59 (47.46%), Postives = 34/59 (57.63%), Query Frame = 0

Query: 30 LSRNSSFGRSARLPACGLPGQVPFNWEAQPGLPKN-QPSDNPPPVKLPPPSSSALGLSK 88
          +SRNSS G         +P  VPF WE QPG P N QP +  PP+  PPP+  +LGL K
Sbjct: 12 ISRNSSVGYYDE----RMPEGVPFEWEMQPGTPINTQPREVVPPLS-PPPAMLSLGLPK 65

BLAST of CsaV3_1G031630 vs. TrEMBL
Match: tr|A0A0A0LWV3|A0A0A0LWV3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G423170 PE=4 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 4.0e-77
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0

Query: 1   MAAKDHTLHRLSEKPFSLLQANQLFVHKILSRNSSFGRSARLPACGLPGQVPFNWEAQPG 60
           MAAKDHTLHRLSEKPFSLLQANQLFVHKILSRNSSFGRSARLPACGLPGQVPFNWEAQPG
Sbjct: 1   MAAKDHTLHRLSEKPFSLLQANQLFVHKILSRNSSFGRSARLPACGLPGQVPFNWEAQPG 60

Query: 61  LPKNQPSDNPPPVKLPPPSSSALGLSKTPHVVPKQAPVKIWFWNKQRRKSRRAVKKSGAL 120
           LPKNQPSDNPPPVKLPPPSSSALGLSKTPHVVPKQAPVKIWFWNKQRRKSRRAVKKSGAL
Sbjct: 61  LPKNQPSDNPPPVKLPPPSSSALGLSKTPHVVPKQAPVKIWFWNKQRRKSRRAVKKSGAL 120

Query: 121 GSSSPRRHVDRDSEFCRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYKLGS 180
           GSSSPRRHVDRDSEFCRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYKLGS
Sbjct: 121 GSSSPRRHVDRDSEFCRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYKLGS 180

Query: 181 LAKEFIRWAF 191
           LAKEFIRWAF
Sbjct: 181 LAKEFIRWAF 190

BLAST of CsaV3_1G031630 vs. TrEMBL
Match: tr|A0A2N9IVX0|A0A2N9IVX0_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS56262 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.1e-10
Identity = 50/119 (42.02%), Postives = 68/119 (57.14%), Query Frame = 0

Query: 13  EKPFSLLQANQLFVHKILSRNSSFGRSARLPACGLPGQVPFNWEAQPGLPKNQP-SDNPP 72
           +KP S+LQ++Q FV++ILSR+ S GRS RL     PG VPF WE +PG  KN P +D  P
Sbjct: 5   QKPNSVLQSDQYFVNRILSRDPSVGRSTRLYYRN-PGGVPFKWEVKPGKAKNPPQNDALP 64

Query: 73  PVKLPPPSSSALGLSKTPHVVPKQAPVKIWFWNKQRRKSRRAVKKSGALGSSSPRRHVD 131
           P+  PPP+        +   V   A  K+WFW K+ +K+ +A KK     S  P   +D
Sbjct: 65  PIIEPPPAEQYHHQELSTPKVYMPARPKLWFW-KKFKKNLKAAKKVQTTKSDQPMPDID 121

BLAST of CsaV3_1G031630 vs. TrEMBL
Match: tr|A0A2P5E1Z5|A0A2P5E1Z5_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_235730 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 5.6e-10
Identity = 54/129 (41.86%), Postives = 69/129 (53.49%), Query Frame = 0

Query: 8   LHRLSEKP-FSLLQANQLFVHKILSRNSSFG---RSARLPACGLPGQVPFNWEAQPGLPK 67
           L + SEKP  S+LQAN+LFV KILSRNSS G    S  L       +VPF WE+QPG PK
Sbjct: 5   LRKTSEKPSVSVLQANELFVKKILSRNSSIGDNTTSHHLSNFKTRAEVPFKWESQPGKPK 64

Query: 68  NQP-------SDNPPPVKLPPPSSSALGLSKTPHVVPKQAPVKIWFWNK-QRRKSRRAVK 125
           + P       + +PP V LP P+  A G+   P  V         FW K  +R+ ++ VK
Sbjct: 65  DPPKGTAHQLTGSPPAVDLPQPAVVARGVHAPPPAVAPNVSGGRPFWKKLGKRRQKQVVK 124

BLAST of CsaV3_1G031630 vs. TrEMBL
Match: tr|A0A2P5DRL6|A0A2P5DRL6_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_038790 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 4.7e-09
Identity = 53/135 (39.26%), Postives = 70/135 (51.85%), Query Frame = 0

Query: 8   LHRLSEKP-FSLLQANQLFVHKILSRNSSFG---RSARLPACGLPGQVPFNWEAQPGLPK 67
           L + SEKP  S+LQAN+LFV KILSRNSS G    S  L       +VPF WE+QPG PK
Sbjct: 5   LRKTSEKPSVSVLQANELFVKKILSRNSSIGDNTTSHHLSNFKTRAEVPFKWESQPGKPK 64

Query: 68  NQP-------SDNPPPVKLPPPSSSALGLSKTPHVVPKQAPVKIWFWNK-QRRKSRRAVK 127
           + P       + +PP V  P  +  A G+   P  V         FW K  +R+ ++ V+
Sbjct: 65  DPPKGTAHQFTGSPPAVDQPQSAVVARGVHAPPRPVAPNVSGGRRFWKKLSKRRQKQVVE 124

Query: 128 KSGALGSSSPRRHVD 131
           K    G S+  R +D
Sbjct: 125 KVEPAGPSAATRGLD 139

BLAST of CsaV3_1G031630 vs. TrEMBL
Match: tr|A0A2I4FHG1|A0A2I4FHG1_9ROSI (uncharacterized protein LOC108998834 OS=Juglans regia OX=51240 GN=LOC108998834 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 8.0e-09
Identity = 45/104 (43.27%), Postives = 60/104 (57.69%), Query Frame = 0

Query: 14  KPFSLLQANQLFVHKILSRNSSFGRSARLPACGLPGQVPFNWEAQPGLPKNQPSDNPPPV 73
           K +SLLQ ++ F HKILS NSS G S+R+        VPF WE QPG PK+ P+D   P 
Sbjct: 12  KRYSLLQGDE-FNHKILSGNSSVGYSSRIYYHRSNEGVPFKWEMQPGTPKDPPNDEGIPP 71

Query: 74  KLPPPSSSALGLSKTPHVVPKQAPVKIW----FWNKQRRKSRRA 114
             PPP+  +LGL K P +  +    K W    FWNK ++  +R+
Sbjct: 72  LSPPPAVLSLGLPK-PCIKVQPNKAKTWPRIRFWNKSKKNKQRS 113

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN65459.16.1e-77100.00hypothetical protein Csa_1G423170 [Cucumis sativus][more]
XP_022987494.13.0e-3973.94uncharacterized protein LOC111485037 [Cucurbita maxima][more]
PON79564.18.4e-1041.86hypothetical protein TorRG33x02_235730 [Trema orientalis][more]
PON75928.17.1e-0939.26hypothetical protein PanWU01x14_038790 [Parasponia andersonii][more]
XP_018831087.11.2e-0843.27PREDICTED: uncharacterized protein LOC108998834 [Juglans regia][more]
Match NameE-valueIdentityDescription
AT4G25845.18.4e-0447.46BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-rela... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0LWV3|A0A0A0LWV3_CUCSA4.0e-77100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G423170 PE=4 SV=1[more]
tr|A0A2N9IVX0|A0A2N9IVX0_FAGSY1.1e-1042.02Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS56262 PE=4 SV=1[more]
tr|A0A2P5E1Z5|A0A2P5E1Z5_9ROSA5.6e-1041.86Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_235730 PE=4 S... [more]
tr|A0A2P5DRL6|A0A2P5DRL6_PARAD4.7e-0939.26Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_038790 PE... [more]
tr|A0A2I4FHG1|A0A2I4FHG1_9ROSI8.0e-0943.27uncharacterized protein LOC108998834 OS=Juglans regia OX=51240 GN=LOC108998834 P... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G031630.1CsaV3_1G031630.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 125..141
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 112..170
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 142..169
NoneNo IPR availablePANTHERPTHR33257FAMILY NOT NAMEDcoord: 10..167
NoneNo IPR availablePANTHERPTHR33257:SF6SUBFAMILY NOT NAMEDcoord: 10..167

The following gene(s) are paralogous to this gene:

None