CsaV3_1G031630 (gene) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TTCAAATTAGGAGAGTATATCAAAGGGGGAGACATTCAAGGGATTCTAAAAAGTAAAATAAAAATACTTCCTTAATTATCTTAACAAACATCTAAAATGACTACTTTATTCACTTCCCATTTACATCCCAAACTCTCCTCATTATTTACCCTCAAATTTTTACTTTCAAAATATTCTCAACACAAAAAGCTATGGCAGCAAAAGATCACACTCTTCATCGTCTCTCTGAAAAACCCTTCTCATTACTTCAAGCAAATCAATTATTTGTCCACAAAATCCTTTCCAGAAACTCGTCATTTGGCCGCTCTGCCCGTCTCCCTGCCTGTGGCCTCCCCGGTCAAGTCCCTTTCAATTGGGAAGCCCAGCCCGGCCTCCCTAAAAACCAACCTTCGGATAATCCCCCGCCAGTTAAACTCCCTCCGCCCTCATCCTCCGCCTTGGGCCTCTCCAAAACTCCTCACGTAGTCCCTAAGCAAGCGCCGGTAAAGATTTGGTTTTGGAATAAGCAGAGGAGAAAATCGAGGCGTGCAGTTAAGAAAAGCGGTGCGCTTGGATCGTCCTCACCGAGACGACATGTCGATCGTGACAGTGAGTTTTGTAGAAAAAAATCAAACGACGAGTCGTCGTCGTCCTCGTCTTTGTCATGTATTTCTTATTCCATGTCTTCGAATTCTTCTTCGGCTTCCTCGTCAGATCGTTACAACAACCGACGGCGCTACAAACTCGGTAGCCTTGCTAAAGAGTTCATACGGTGGGCCTTTTAATTAAGATTATTATCATTACTATTATTATTATCATTATCATCATCATTATAAATTTCTCAAGTTCTTATCTTCGGAATAATGTAATTTAATTTTTGTGTATTCTTGTCGAATGGAAAATTTTTGTATTGG ATGGCAGCAAAAGATCACACTCTTCATCGTCTCTCTGAAAAACCCTTCTCATTACTTCAAGCAAATCAATTATTTGTCCACAAAATCCTTTCCAGAAACTCGTCATTTGGCCGCTCTGCCCGTCTCCCTGCCTGTGGCCTCCCCGGTCAAGTCCCTTTCAATTGGGAAGCCCAGCCCGGCCTCCCTAAAAACCAACCTTCGGATAATCCCCCGCCAGTTAAACTCCCTCCGCCCTCATCCTCCGCCTTGGGCCTCTCCAAAACTCCTCACGTAGTCCCTAAGCAAGCGCCGGTAAAGATTTGGTTTTGGAATAAGCAGAGGAGAAAATCGAGGCGTGCAGTTAAGAAAAGCGGTGCGCTTGGATCGTCCTCACCGAGACGACATGTCGATCGTGACAGTGAGTTTTGTAGAAAAAAATCAAACGACGAGTCGTCGTCGTCCTCGTCTTTGTCATGTATTTCTTATTCCATGTCTTCGAATTCTTCTTCGGCTTCCTCGTCAGATCGTTACAACAACCGACGGCGCTACAAACTCGGTAGCCTTGCTAAAGAGTTCATACGGTGGGCCTTTTAA ATGGCAGCAAAAGATCACACTCTTCATCGTCTCTCTGAAAAACCCTTCTCATTACTTCAAGCAAATCAATTATTTGTCCACAAAATCCTTTCCAGAAACTCGTCATTTGGCCGCTCTGCCCGTCTCCCTGCCTGTGGCCTCCCCGGTCAAGTCCCTTTCAATTGGGAAGCCCAGCCCGGCCTCCCTAAAAACCAACCTTCGGATAATCCCCCGCCAGTTAAACTCCCTCCGCCCTCATCCTCCGCCTTGGGCCTCTCCAAAACTCCTCACGTAGTCCCTAAGCAAGCGCCGGTAAAGATTTGGTTTTGGAATAAGCAGAGGAGAAAATCGAGGCGTGCAGTTAAGAAAAGCGGTGCGCTTGGATCGTCCTCACCGAGACGACATGTCGATCGTGACAGTGAGTTTTGTAGAAAAAAATCAAACGACGAGTCGTCGTCGTCCTCGTCTTTGTCATGTATTTCTTATTCCATGTCTTCGAATTCTTCTTCGGCTTCCTCGTCAGATCGTTACAACAACCGACGGCGCTACAAACTCGGTAGCCTTGCTAAAGAGTTCATACGGTGGGCCTTTTAA MAAKDHTLHRLSEKPFSLLQANQLFVHKILSRNSSFGRSARLPACGLPGQVPFNWEAQPGLPKNQPSDNPPPVKLPPPSSSALGLSKTPHVVPKQAPVKIWFWNKQRRKSRRAVKKSGALGSSSPRRHVDRDSEFCRKKSNDESSSSSSLSCISYSMSSNSSSASSSDRYNNRRRYKLGSLAKEFIRWAF
BLAST of CsaV3_1G031630 vs. NCBI nr
Match: KGN65459.1 (hypothetical protein Csa_1G423170 [Cucumis sativus]) HSP 1 Score: 296.6 bits (758), Expect = 6.1e-77 Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0
BLAST of CsaV3_1G031630 vs. NCBI nr
Match: XP_022987494.1 (uncharacterized protein LOC111485037 [Cucurbita maxima]) HSP 1 Score: 171.4 bits (433), Expect = 3.0e-39 Identity = 139/188 (73.94%), Postives = 151/188 (80.32%), Query Frame = 0
BLAST of CsaV3_1G031630 vs. NCBI nr
Match: PON79564.1 (hypothetical protein TorRG33x02_235730 [Trema orientalis]) HSP 1 Score: 73.6 bits (179), Expect = 8.4e-10 Identity = 54/129 (41.86%), Postives = 69/129 (53.49%), Query Frame = 0
BLAST of CsaV3_1G031630 vs. NCBI nr
Match: PON75928.1 (hypothetical protein PanWU01x14_038790 [Parasponia andersonii]) HSP 1 Score: 70.5 bits (171), Expect = 7.1e-09 Identity = 53/135 (39.26%), Postives = 70/135 (51.85%), Query Frame = 0
BLAST of CsaV3_1G031630 vs. NCBI nr
Match: XP_018831087.1 (PREDICTED: uncharacterized protein LOC108998834 [Juglans regia]) HSP 1 Score: 69.7 bits (169), Expect = 1.2e-08 Identity = 45/104 (43.27%), Postives = 60/104 (57.69%), Query Frame = 0
BLAST of CsaV3_1G031630 vs. TAIR10
Match: AT4G25845.1 (BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 4B (TAIR:AT4G25850.2)) HSP 1 Score: 41.2 bits (95), Expect = 8.4e-04 Identity = 28/59 (47.46%), Postives = 34/59 (57.63%), Query Frame = 0
BLAST of CsaV3_1G031630 vs. TrEMBL
Match: tr|A0A0A0LWV3|A0A0A0LWV3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G423170 PE=4 SV=1) HSP 1 Score: 296.6 bits (758), Expect = 4.0e-77 Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0
BLAST of CsaV3_1G031630 vs. TrEMBL
Match: tr|A0A2N9IVX0|A0A2N9IVX0_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS56262 PE=4 SV=1) HSP 1 Score: 75.9 bits (185), Expect = 1.1e-10 Identity = 50/119 (42.02%), Postives = 68/119 (57.14%), Query Frame = 0
BLAST of CsaV3_1G031630 vs. TrEMBL
Match: tr|A0A2P5E1Z5|A0A2P5E1Z5_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_235730 PE=4 SV=1) HSP 1 Score: 73.6 bits (179), Expect = 5.6e-10 Identity = 54/129 (41.86%), Postives = 69/129 (53.49%), Query Frame = 0
BLAST of CsaV3_1G031630 vs. TrEMBL
Match: tr|A0A2P5DRL6|A0A2P5DRL6_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_038790 PE=4 SV=1) HSP 1 Score: 70.5 bits (171), Expect = 4.7e-09 Identity = 53/135 (39.26%), Postives = 70/135 (51.85%), Query Frame = 0
BLAST of CsaV3_1G031630 vs. TrEMBL
Match: tr|A0A2I4FHG1|A0A2I4FHG1_9ROSI (uncharacterized protein LOC108998834 OS=Juglans regia OX=51240 GN=LOC108998834 PE=4 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 8.0e-09 Identity = 45/104 (43.27%), Postives = 60/104 (57.69%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |