CsaV3_1G031300 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G031300
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 18494374 .. 18494604 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTATATATACGAAGGATCCCTCTTCTCCTTATTTCTCATCGCCAATCAAAATGGGGGATTTTGGGCTTGCTTTGAAGTTGGCAGCTGATTGTGCTCCGGCGGTTGCAACGGCTTCAAATGTGGTTATGACGGTTGCACCATTTCTGGCCCCTGTTGTAGCTCCTGTTATGGTTGCAGCCACTGTTGTTACGTCGGTCACCGGCGTTTTGAAGATTTTTGGAATTTGA

mRNA sequence

ATGGCTATATATACGAAGGATCCCTCTTCTCCTTATTTCTCATCGCCAATCAAAATGGGGGATTTTGGGCTTGCTTTGAAGTTGGCAGCTGATTGTGCTCCGGCGGTTGCAACGGCTTCAAATGTGGTTATGACGGTTGCACCATTTCTGGCCCCTGTTGTAGCTCCTGTTATGGTTGCAGCCACTGTTGTTACGTCGGTCACCGGCGTTTTGAAGATTTTTGGAATTTGA

Coding sequence (CDS)

ATGGCTATATATACGAAGGATCCCTCTTCTCCTTATTTCTCATCGCCAATCAAAATGGGGGATTTTGGGCTTGCTTTGAAGTTGGCAGCTGATTGTGCTCCGGCGGTTGCAACGGCTTCAAATGTGGTTATGACGGTTGCACCATTTCTGGCCCCTGTTGTAGCTCCTGTTATGGTTGCAGCCACTGTTGTTACGTCGGTCACCGGCGTTTTGAAGATTTTTGGAATTTGA

Protein sequence

MAIYTKDPSSPYFSSPIKMGDFGLALKLAADCAPAVATASNVVMTVAPFLAPVVAPVMVAATVVTSVTGVLKIFGI
Homology
[Close]
BLAST of CsaV3_1G031300 vs. NCBI nr
Match: KGN65426.1 (hypothetical protein Csa_1G420870 [Cucumis sativus])

HSP 1 Score: 82.4 bits (202), Expect = 7.3e-13
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0 

Query: 1  MAIYTKDPSSPYFSSPIKMGDFGLALKLAADCAPAVXXXXXXXXXXXXXXXXXXXXXXXX 60
          MAIYTKDPSSPYFSSPIKMGDFGLALKLAADCAPAVXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1  MAIYTKDPSSPYFSSPIKMGDFGLALKLAADCAPAVXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61 XXXXXXXTGVLKIFGI 77
          XXXXXXXTGVLKIFGI
Sbjct: 61 XXXXXXXTGVLKIFGI 76

[Close]
BLAST of CsaV3_1G031300 vs. TrEMBL
Match: tr|A0A0A0LZP7|A0A0A0LZP7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G420870 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 4.8e-13
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0 

Query: 1  MAIYTKDPSSPYFSSPIKMGDFGLALKLAADCAPAVXXXXXXXXXXXXXXXXXXXXXXXX 60
          MAIYTKDPSSPYFSSPIKMGDFGLALKLAADCAPAVXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1  MAIYTKDPSSPYFSSPIKMGDFGLALKLAADCAPAVXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61 XXXXXXXTGVLKIFGI 77
          XXXXXXXTGVLKIFGI
Sbjct: 61 XXXXXXXTGVLKIFGI 76

The following BLAST results are available for this feature:
BLAST of CsaV3_1G031300 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN65426.17.3e-13100.00hypothetical protein Csa_1G420870 [Cucumis sativus][more]
BLAST of CsaV3_1G031300 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G031300 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G031300 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LZP7|A0A0A0LZP7_CUCSA4.8e-13100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G420870 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G031300.1CsaV3_1G031300.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G031300CSPI01G20020Wild cucumber (PI 183967)cpicucB000
CsaV3_1G031300MELO3C017493Melon (DHL92) v3.5.1cucmeB043
CsaV3_1G031300MELO3C017493.2Melon (DHL92) v3.6.1cucmedB040
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G031300Cucumber (Chinese Long) v3cuccucB014
CsaV3_1G031300Silver-seed gourdcarcucB0826
CsaV3_1G031300Cucumber (Gy14) v2cgybcucB001
CsaV3_1G031300Cucumber (Gy14) v2cgybcucB063
CsaV3_1G031300Cucumber (Gy14) v1cgycucB093
CsaV3_1G031300Cucumber (Gy14) v1cgycucB098
CsaV3_1G031300Cucurbita maxima (Rimu)cmacucB0068
CsaV3_1G031300Cucurbita maxima (Rimu)cmacucB0113
CsaV3_1G031300Cucurbita moschata (Rifu)cmocucB0055
CsaV3_1G031300Cucurbita moschata (Rifu)cmocucB0101
CsaV3_1G031300Cucurbita pepo (Zucchini)cpecucB0430
CsaV3_1G031300Cucurbita pepo (Zucchini)cpecucB0797
CsaV3_1G031300Wild cucumber (PI 183967)cpicucB077
CsaV3_1G031300Bottle gourd (USVL1VR-Ls)cuclsiB013
CsaV3_1G031300Bottle gourd (USVL1VR-Ls)cuclsiB076
CsaV3_1G031300Watermelon (Charleston Gray)cucwcgB075
CsaV3_1G031300Watermelon (97103) v1cucwmB085
CsaV3_1G031300Watermelon (97103) v1cucwmB092
CsaV3_1G031300Watermelon (97103) v2cucwmbB064
CsaV3_1G031300Wax gourdcucwgoB004
CsaV3_1G031300Wax gourdcucwgoB106