CsaV3_1G031100 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G031100
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Armadillo repeat-containing protein 7
Location	chr1 : 18285091 .. 18286445 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAGGTATTAAATCTCTATTTCTGATATTACTGTGATTTGTTTCAGAGCTCTCCATGGATGTTTGCCTACTTATCCCCTTCTCTAGAACAATTTTACTGAATTGTAATTTTGTGAGCAGCTAAATGTTCTGGAGCTGTTTTTGGACTGTTTCATAATTTTAAATTATTTGATTTAGATGTGAGTACTGTTTGTTCTACCGATTGGATGACTACCTGACCACAGATACATCTACTGTTACTTTTTTCATGCAGACCCTGCTAATGCTTCTCTTATAACTCAGTGTGGTGGAATTCCCCTCATCATTGAATGCTTGTCAAGTCCTGTAAACCTTGTGTGTGTTGCTTCTTGTCAGGTTTTCAGTCTTTGGTTCATAAAAGGCATTGCCCAAAAGGTTTTTTGGGAAAAATAATTAGGGCCCTACTGTATGAAAATTAACTTTTGGTAACTTCTTTAACTAAAATTTTAAACATGATTCAGCATTCTATTTCTTTTCGTTCGGTAAGAGACAAGAGTACTAATAGGAATATCTTTAGAACAGTAATAAGGATCTTTGTAAGGGTATAGTGGTAGTTAGCTGAGAGTCTTGGTTACAAATATAGATAGTTAGATATCTTTAAGGGAAAGCCATATTTTGATGGGTCAGTCCATAGTGGGCGGATTGTGGAAGGAGATAGCCCATTCAAAAGGCTGCTAGATATTGTAGGTTGCTTTTTATATTGCATTGTATTAGCATCTTTGTCTTTTCTGTGCTTGGATACCGAACACATTCTTTTATCAAATATCGAATTTCAATGTATTTTTTCTCTTGGATATGCATGATATTTTTATCATTTGCTAATATATGGAAACCTTGACTATTGAAAATTGATTTGTTGATCTAGTCCAATGTATCTCCACCTCATTTTTTCTAAAGGATCTACTAATATCTCGACTAAATCATCTGATAAATGGATCACTTTTACTATTCTGTCAAATTGTATCACCTGTGGTTGAATCAGTGATTGATATTCCCTTTGGTTTTGATCAAAATAAAGTGTCGAACTTATTTCAATTTGAGGTGAATCATGCAGTTAGCTTCCTTTTTGTATTTTATGGAGGTACATTAGTGACATAGAATGTGTAGAATTTAGCCACATTTGAAAATCCATTCATTCGTGGCAAACTTAACAATTCTTATCAGGTGAATTATGCACTTGGCGCCATATATTACCTCTGCAATACATCAAACAAAGAGGAGATTATGAAACCAGAAGTTGTAGATGTCATCAACAAATACGCAGTGGCTGAGAGTGTGAGCTTTAGTAATCTATCTAAAGCAATTCTGGACAAGCACCTATCTAACAGAAACTGA

mRNA sequence

ATGCCAGACCCTGCTAATGCTTCTCTTATAACTCAGTGTGGTGGAATTCCCCTCATCATTGAATGCTTGTCAAGTCCTGTAAACCTTGTGTGTGTTGCTTCTTGTCAGGTGAATTATGCACTTGGCGCCATATATTACCTCTGCAATACATCAAACAAAGAGGAGATTATGAAACCAGAAGTTGTAGATGTCATCAACAAATACGCAGTGGCTGAGAGTGTGAGCTTTAGTAATCTATCTAAAGCAATTCTGGACAAGCACCTATCTAACAGAAACTGA

Coding sequence (CDS)

ATGCCAGACCCTGCTAATGCTTCTCTTATAACTCAGTGTGGTGGAATTCCCCTCATCATTGAATGCTTGTCAAGTCCTGTAAACCTTGTGTGTGTTGCTTCTTGTCAGGTGAATTATGCACTTGGCGCCATATATTACCTCTGCAATACATCAAACAAAGAGGAGATTATGAAACCAGAAGTTGTAGATGTCATCAACAAATACGCAGTGGCTGAGAGTGTGAGCTTTAGTAATCTATCTAAAGCAATTCTGGACAAGCACCTATCTAACAGAAACTGA

Protein sequence

MPDPANASLITQCGGIPLIIECLSSPVNLVCVASCQVNYALGAIYYLCNTSNKEEIMKPEVVDVINKYAVAESVSFSNLSKAILDKHLSNRN

Homology

[Close]

BLAST of CsaV3_1G031100 vs. NCBI nr
Match: XP_011648493.1 (PREDICTED: armadillo repeat-containing protein 7-like [Cucumis sativus])

HSP 1 Score: 176.0 bits (445), Expect = 5.9e-41
Identity = 87/89 (97.75%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 4   PANASLITQCGGIPLIIECLSSPVNLVCVASCQVNYALGAIYYLCNTSNKEEIMKPEVVD 63
           PANAS+ITQCGGIPLIIECLSSPVNLVCVASCQVNYALGAIYYLCNTSNKEEIMKPEVVD
Sbjct: 38  PANASIITQCGGIPLIIECLSSPVNLVCVASCQVNYALGAIYYLCNTSNKEEIMKPEVVD 97

Query: 64  VINKYAVAESVSFSNLSKAILDKHLSNRN 93
           VINKYAVAESVSFSNL+KAILDKHLSNRN
Sbjct: 98  VINKYAVAESVSFSNLAKAILDKHLSNRN 126

[Close]

BLAST of CsaV3_1G031100 vs. NCBI nr
Match: XP_004301610.1 (PREDICTED: armadillo repeat-containing protein 7-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 125.2 bits (313), Expect = 1.2e-25
Identity = 63/91 (69.23%), Postives = 76/91 (83.52%), Query Frame = 0


Query: 2   PDPANASLITQCGGIPLIIECLSSPV-NLVCVASCQVNYALGAIYYLCNTSNKEEIMKPE 61
           PDPANA+++TQ GGIPL+I+CLSSPV N        VNYA+G++YYLCNTSNKEEIMKPE
Sbjct: 92  PDPANAAIVTQSGGIPLVIQCLSSPVSNPPLPVRNTVNYAIGSLYYLCNTSNKEEIMKPE 151

Query: 62  VVDVINKYAVAE--SVSFSNLSKAILDKHLS 90
           VVD++ +YA AE  SVSFSNL+KA LDKH+S
Sbjct: 152 VVDIMKRYAAAEGASVSFSNLAKAFLDKHVS 182

[Close]

BLAST of CsaV3_1G031100 vs. NCBI nr
Match: XP_022729317.1 (armadillo repeat-containing protein 7 isoform X1 [Durio zibethinus])

HSP 1 Score: 123.6 bits (309), Expect = 3.4e-25
Identity = 62/89 (69.66%), Postives = 74/89 (83.15%), Query Frame = 0


Query: 3   DPANASLITQCGGIPLIIECLSSPVNLVCVASCQVNYALGAIYYLCNTSNKEEIMKPEVV 62
           DPANA++ITQCGGIPL+I+CLSSPV         VNYALGA+YYLCN SN+EEI+KPEVV
Sbjct: 93  DPANAAIITQCGGIPLVIQCLSSPVRNT------VNYALGALYYLCNKSNREEILKPEVV 152

Query: 63  DVINKYAVAE--SVSFSNLSKAILDKHLS 90
           DVI +YA A+  +VSFSNL+KA LDKH+S
Sbjct: 153 DVIERYAAAQTINVSFSNLAKAFLDKHVS 175

[Close]

BLAST of CsaV3_1G031100 vs. NCBI nr
Match: XP_022729318.1 (armadillo repeat-containing protein 7 isoform X2 [Durio zibethinus])

HSP 1 Score: 123.6 bits (309), Expect = 3.4e-25
Identity = 62/89 (69.66%), Postives = 74/89 (83.15%), Query Frame = 0


Query: 3   DPANASLITQCGGIPLIIECLSSPVNLVCVASCQVNYALGAIYYLCNTSNKEEIMKPEVV 62
           DPANA++ITQCGGIPL+I+CLSSPV         VNYALGA+YYLCN SN+EEI+KPEVV
Sbjct: 60  DPANAAIITQCGGIPLVIQCLSSPVRNT------VNYALGALYYLCNKSNREEILKPEVV 119

Query: 63  DVINKYAVAE--SVSFSNLSKAILDKHLS 90
           DVI +YA A+  +VSFSNL+KA LDKH+S
Sbjct: 120 DVIERYAAAQTINVSFSNLAKAFLDKHVS 142

[Close]

BLAST of CsaV3_1G031100 vs. NCBI nr
Match: XP_017627539.1 (PREDICTED: armadillo repeat-containing protein 7 isoform X3 [Gossypium arboreum])

HSP 1 Score: 122.9 bits (307), Expect = 5.9e-25
Identity = 61/89 (68.54%), Postives = 74/89 (83.15%), Query Frame = 0


Query: 3   DPANASLITQCGGIPLIIECLSSPVNLVCVASCQVNYALGAIYYLCNTSNKEEIMKPEVV 62
           DPANA++ITQCGGIPL+I+CLSSPV         VNYALGA+YYLCN SN+EEI+KPEV+
Sbjct: 60  DPANAAIITQCGGIPLVIKCLSSPVRNT------VNYALGALYYLCNKSNREEILKPEVI 119

Query: 63  DVINKYAVAESV--SFSNLSKAILDKHLS 90
           DVI +YA A++V  SFSNL+KA LDKH+S
Sbjct: 120 DVIERYAAAQTVNASFSNLAKAFLDKHVS 142

[Close]

BLAST of CsaV3_1G031100 vs. TAIR10
Match: AT5G37290.1 (ARM repeat superfamily protein)

HSP 1 Score: 62.4 bits (150), Expect = 1.7e-10
Identity = 31/50 (62.00%), Postives = 41/50 (82.00%), Query Frame = 0


Query: 43  AIYYLC--NTSNKEEIMKPEVVDVINKYAVAE--SVSFSNLSKAILDKHL 89
           A+YY+C  N + +EEI++PEVVD+I +YA AE  SVSFSNL+KA LDKH+
Sbjct: 127 ALYYMCDYNRATREEILRPEVVDLIERYAAAESVSVSFSNLAKAFLDKHV 176

[Close]

BLAST of CsaV3_1G031100 vs. TrEMBL
Match: tr|A0A2P5SCW5|A0A2P5SCW5_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD06098 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 3.9e-25
Identity = 61/89 (68.54%), Postives = 74/89 (83.15%), Query Frame = 0


Query: 3   DPANASLITQCGGIPLIIECLSSPVNLVCVASCQVNYALGAIYYLCNTSNKEEIMKPEVV 62
           DPANA++ITQCGGIPL+I+CLSSPV         VNYALGA+YYLCN SN+EEI+KPEV+
Sbjct: 35  DPANAAIITQCGGIPLVIKCLSSPVRNT------VNYALGALYYLCNKSNREEILKPEVI 94

Query: 63  DVINKYAVAESV--SFSNLSKAILDKHLS 90
           DVI +YA A++V  SFSNL+KA LDKHL+
Sbjct: 95  DVIERYAAAQTVNASFSNLAKAFLDKHLT 117

[Close]

BLAST of CsaV3_1G031100 vs. TrEMBL
Match: tr|A0A251Q039|A0A251Q039_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G143200 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.9e-24
Identity = 61/89 (68.54%), Postives = 72/89 (80.90%), Query Frame = 0


Query: 3   DPANASLITQCGGIPLIIECLSSPVNLVCVASCQVNYALGAIYYLCNTSNKEEIMKPEVV 62
           DPANA +ITQCGGIPL+I+CLSSPV         VNYA+G++YYLCN SNK EIMKPEVV
Sbjct: 66  DPANAVIITQCGGIPLVIQCLSSPVRNT------VNYAIGSLYYLCNASNKGEIMKPEVV 125

Query: 63  DVINKYAVAE--SVSFSNLSKAILDKHLS 90
           DV+ +YA AE  S+SFSNL+KA LDKH+S
Sbjct: 126 DVMKRYAAAEEVSLSFSNLAKAFLDKHVS 148

[Close]

BLAST of CsaV3_1G031100 vs. TrEMBL
Match: tr|A0A061GXH2|A0A061GXH2_THECC (ARM repeat superfamily protein isoform 3 OS=Theobroma cacao OX=3641 GN=TCM_041735 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.5e-24
Identity = 60/89 (67.42%), Postives = 73/89 (82.02%), Query Frame = 0


Query: 3   DPANASLITQCGGIPLIIECLSSPVNLVCVASCQVNYALGAIYYLCNTSNKEEIMKPEVV 62
           DPANA+++TQC GIPL+I+CLSSPV         VNYALGA+YYLCN SN+EEI+KPEVV
Sbjct: 34  DPANAAILTQCDGIPLVIQCLSSPVRNT------VNYALGALYYLCNKSNREEILKPEVV 93

Query: 63  DVINKYAVAE--SVSFSNLSKAILDKHLS 90
           DVI +YA A+  +VSFSNL+KA LDKH+S
Sbjct: 94  DVIERYAAAQTVNVSFSNLAKAFLDKHVS 116

[Close]

BLAST of CsaV3_1G031100 vs. TrEMBL
Match: tr|A0A061F372|A0A061F372_THECC (ARM repeat superfamily protein OS=Theobroma cacao OX=3641 GN=TCM_026566 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 7.3e-24
Identity = 58/87 (66.67%), Postives = 70/87 (80.46%), Query Frame = 0


Query: 3   DPANASLITQCGGIPLIIECLSSPVNLVCVASCQVNYALGAIYYLCNTSNKEEIMKPEVV 62
           DPAN ++ITQC GIPL I+CLSSPV         VNYALGA YYLCN +N+EEI+KPEVV
Sbjct: 26  DPANGAIITQCDGIPLAIQCLSSPV------INTVNYALGAFYYLCNKANREEILKPEVV 85

Query: 63  DVINKYAVAESVSFSNLSKAILDKHLS 90
           DVI +YA +++VSFSNL+KA LDKH+S
Sbjct: 86  DVIERYAASQNVSFSNLAKAFLDKHVS 106

[Close]

BLAST of CsaV3_1G031100 vs. TrEMBL
Match: tr|A0A2P2JC85|A0A2P2JC85_RHIMU (Uncharacterized protein MANES_02G134600 OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 9.0e-22
Identity = 55/87 (63.22%), Postives = 68/87 (78.16%), Query Frame = 0


Query: 3   DPANASLITQCGGIPLIIECLSSPVNLVCVASCQVNYALGAIYYLCNTSNKEEIMKPEVV 62
           D ANA+++T+CGGI  II+CLSSP+         V YALGA+YYLC  SNKEEI+KPEV+
Sbjct: 93  DSANAAVVTECGGILHIIQCLSSPIRNT------VKYALGALYYLCYASNKEEILKPEVI 152

Query: 63  DVINKYAVAESVSFSNLSKAILDKHLS 90
           DVI +YA A+SV FSNL+KA LDKH+S
Sbjct: 153 DVIKRYAEADSVDFSNLAKAFLDKHVS 173

The following BLAST results are available for this feature:

BLAST of CsaV3_1G031100 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011648493.1	5.9e-41	97.75	PREDICTED: armadillo repeat-containing protein 7-like [Cucumis sativus]	[more]
XP_004301610.1	1.2e-25	69.23	PREDICTED: armadillo repeat-containing protein 7-like [Fragaria vesca subsp. ves...	[more]
XP_022729317.1	3.4e-25	69.66	armadillo repeat-containing protein 7 isoform X1 [Durio zibethinus]	[more]
XP_022729318.1	3.4e-25	69.66	armadillo repeat-containing protein 7 isoform X2 [Durio zibethinus]	[more]
XP_017627539.1	5.9e-25	68.54	PREDICTED: armadillo repeat-containing protein 7 isoform X3 [Gossypium arboreum]	[more]

BLAST of CsaV3_1G031100 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G37290.1	1.7e-10	62.00	ARM repeat superfamily protein	[more]

BLAST of CsaV3_1G031100 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G031100 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2P5SCW5\|A0A2P5SCW5_GOSBA	3.9e-25	68.54	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD06098 PE=4 SV...	[more]
tr\|A0A251Q039\|A0A251Q039_PRUPE	1.9e-24	68.54	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G143200 PE=4 SV=1	[more]
tr\|A0A061GXH2\|A0A061GXH2_THECC	2.5e-24	67.42	ARM repeat superfamily protein isoform 3 OS=Theobroma cacao OX=3641 GN=TCM_04173...	[more]
tr\|A0A061F372\|A0A061F372_THECC	7.3e-24	66.67	ARM repeat superfamily protein OS=Theobroma cacao OX=3641 GN=TCM_026566 PE=4 SV=...	[more]
tr\|A0A2P2JC85\|A0A2P2JC85_RHIMU	9.0e-22	63.22	Uncharacterized protein MANES_02G134600 OS=Rhizophora mucronata OX=61149 PE=4 SV...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR011989	ARM-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G031100.1	CsaV3_1G031100.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011989	Armadillo-like helical	GENE3D	G3DSA:1.25.10.10		coord: 1..91 e-value: 1.6E-5 score: 26.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G031100	CsGy1G019560	Cucumber (Gy14) v2	cgybcucB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G031100	Cucurbita maxima (Rimu)	cmacucB0073
CsaV3_1G031100	Cucurbita moschata (Rifu)	cmocucB0060
CsaV3_1G031100	Cucurbita pepo (Zucchini)	cpecucB0434
CsaV3_1G031100	Cucurbita pepo (Zucchini)	cpecucB0800
CsaV3_1G031100	Wild cucumber (PI 183967)	cpicucB000
CsaV3_1G031100	Bottle gourd (USVL1VR-Ls)	cuclsiB072
CsaV3_1G031100	Melon (DHL92) v3.5.1	cucmeB058
CsaV3_1G031100	Melon (DHL92) v3.6.1	cucmedB055
CsaV3_1G031100	Watermelon (Charleston Gray)	cucwcgB078
CsaV3_1G031100	Watermelon (97103) v1	cucwmB095
CsaV3_1G031100	Watermelon (97103) v2	cucwmbB067
CsaV3_1G031100	Wax gourd	cucwgoB108
CsaV3_1G031100	Silver-seed gourd	carcucB0144