CsaV3_1G031080 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G031080
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionTransposon Ty3-I Gag-Pol polyprotein
Locationchr1 : 18270244 .. 18273977 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAGGACCTATCACACGAGGTAGGAAGGACCGACGATCCCCGACCCGACGATCGAAATCTAAGGGTCCGGATGCAAGGGAGCATGTCGAAACTCGCCTTGCCAACCTTGAGCAAAGTCTCGAGGATGTCCAGCACACGGTAGAAGAGTTGGGTGATAACTACGAAGAGCTTATTCAGGAGAATGTGGAAATCTCCGCAGCAACCAAGGAGCTCGTGGCCGACCTTGGAAAAACATTCCAAAAGGATTTGAAAGAGTTGTCATCAACCGTAACCACTTTGAAGACATTTGTTGAAGGTGAGTTACGCGAACTCTATTCTAGGTATATTTCCCTAGATGCAAAGGTAGATACTCTTTGCATGGAATGTCGTTCCAAGCACTTTGGTGGAGACGGTCCATCCACCAGTACACACACCGCTGTGCAAGGCACTACTCACATAAAAGTGCCGAAACCTGACACATACAATGGGGTGAGGAATGCCACGGTTGTGGAAAACTTCCTCTTTGGCCTTGACCGATACTATGTAGCTGTCGGTGTTCGAGATGATGAGGCCAAGATAAACAATGCCCCGACATTCCTAAGGGATGCCGCACAACTTTGGTGGCGTCGAAGATACGCTGACCAAAATGGGAATGCCATCCAGACGTGGGAACAATTCAAAGCCGAACTAAGAAAGCACTTCGTTCCCCACAATGCTGAAATGGAGTCAAGAGCCAAACTTCGAAGTCTAAGACACACAGGTAACATTCTCGACTATGTGAAGGAATTTACCACTATTATGCTTGAAATTAGTGATCTGCCCGAGAAGGAAGCCCTATTCCAATTTAGAGATGGATTGAAAGATTGGGCCAAGGTTGAGCTAGACCGTCGCAATGTCCAAACATTGGACGACGCTATAGCCGCAGCTGAGATGCTTATCGATTATACAACCCAATCAAAGGAGAGAAAACCTAGCCCAAGTAAACGTGAAGGCAATCACTACAAGCATAGAGACTCCGAGCAAAAGGAAAAGGGAAAGAAGGCATTCCAAAGACATGGCAAGTATCACAAAACTCAACAAGGTGAGTCGTCCAAACCTTCTCCCTGTTTTGTTTGTAATGGCCCTCATCGGACAAGAGACTGTCCGAATAGAAAAGCAATGAATGCACTTGTTGCCAAATTGCTCGAGTCCAAGCAAGGAGATGATACACCACAGATTGGTTCCTTGCAACACATTGGAGCTCTGAAACAGGCCAATCAAACAACTAAAGGAGGCCTACTCCATGGAAATGTAAAGATAAACGGGAGAGAGGCTATTGCCATGTTTGACACCGGTGCGAGTCATAACTTCATGAACGTGAATGAGGCTAAGAGAATAGGCCTCAAGTTCACAAACGAAGAGGGGACTGTCAAGGCGGTAAACTCAGAAGCACAAGCCATCAAAGGTGTAGCAAGAGGTGTAACAGTCAAGATCGGTGATTGGCAAGGTAAGCTCGACTTCACCGTGCTACCTATGGATGACTTTGACATTGTGCTTGGCTTAGGGTTCTTCGATAGAGTAATTGCTATCGTTGACTCCTCCGGATGTACCCTGACGATAGTGGATGGTCAAATAACGACCATCCCACTAAAGAAGGGAAAACCAACAATCAGATTGTCAGCCATGCTAAATAAGGAGGGAGTCGCCGAAACCCAACATCAAACAGTACCGTCGAGAGAGACAAATTCTAAACCAACAGTCCCAACAGAACACAAGGACGTTATGCTCGAGGCAAAGTCAGGAAACGCCGATGCAGTCAATAACGTCGTAAGCCAGAAGGCAAAACTGGCTGCTATAACCACCAGCATGTCCAGAAGTGACTTCCTTAACAGAATCAAGGAACGGCACGAAGAATGTGATATATCAAGGGCATGCCTGGCGAAGGCCGCCACTAAAATGAAAAAGTGGGCGGACCGGAAAAGGAGGGCTAGAGAGTACCAAGTAGGGGAAAAAGTAATGGTAAAGCTGCTACCAAACCAATTTAAATCCCTACGCAAGGTACATAAAGGCCTAATCCGAAGATACGAAGGACCCTTCTCTATCATTGAGAAAGTGGGCAAAGCAGCTTATCGATTGGAACTTCCTCCCAGACTGAAGATCCATAATGTCTTCCATGTGAGCATGTTGAAGCCTTTCTATGAAGACAAGGAGGATCCAAGCAGAGGTGAGTCCTCTCGTGCACCTACCGGCATGATCTCAGAGTTCGACAGGAAAATCAAGGAGATCTTAGCGGAGAGGAAGATACGAAGGAGAGGAGTTCCCAGTTATAACGAATATTTGATTGCTTGGGAAGGACTACCCGAAAGCGAAGCAAGTTGGGAAAAGGAAGACACCCTATGGCAATTTCAAGATGAAATCAGAAGATTTCAAGAAAGCGCAACGGGGACGTTGCGAAATCGAGTGGGGGAGGGTGTCACGCCCCAAAAATGACCCAACAAATTTTTCGCAAATTAAGGCTCCTTAGCATTGCCCAAGAGGAGCCAACCAAGTCCCAAGCAGTCCAAAGACCCAAGGAAGAGGAACCAGTTCACGCCAAGCCTATGACACGCCAATGTGCAGGAGACTGGCGCGCGCGGCTCTATCATGACATGGACGCGCGCGCGGCTCTGTCATGACATGGACGCGTGCGCGCGCAAGGGCGACAGGCAGACAAGCGGACGCGCACGGCAGATGGCGCGCGCGCGGCATGGACGTGCGCGCAAGGCCAGTCGGACGCGCGCGCTACACTAGCGCGCGCGGAAAGCGGACACGGAGCGCGCGGAGAAGCATCCGGGAACCTCTCGAAGGTTCCAGAAGAATCGCGAGCGGCCGAGAAGGCTCGCGAACACGCGCGAAGGCGCGCGCGCGCCAGACGCACGCAGACGCCTCCAGAAGCTTCTGGACAGTGTCATGAGCGCTCGGGAATTTTCCAGATTGCTTTTGCCGACCTTGTAAGGCGGTTTAGGGCTTGTAAATTGGTTGTATACTTCTATAAATACCCCAAAAGGGTCCATTTGTACAGACTACACAGAATCCTTGGGAATTCATCAACAAAGCTCTCTTAAGCATTTTATCAAACACCTTGTCTACAACTCTTTGCCTACTTCTTACCTACGGATTTCCTTCTTCCTTAGTTTGTTCCAACAAGTCCAATTACTCTTAGGCTTACATTGGTGCACCCCAACACCTTCGTGCCGCACGTTGGTTTTGTGATCAAAATAACCACGTGACATTATGCTTACTAAGACATGTTTATTTTAATAGTTTTCTTTTTCTTTTTAATAATTCTCTAGATTCTTTTCAAAAGAAGAAAACAAGTTATTAAAACATACAAAATAGTTGGTTTACTCTTCCGGCAATTAGGTAGCACGAACTTGAGCTGTAATCTAAGTTCTAGTTTGCCTCTAAAATCTTCTTGTACTAATTATTTACCAAATAAAACACCATCTCTAGTCTTTTTTGGAAAAAATATTCCTCGTAGCAACACATTTCCAATAGGTAGCACTTTCTTCAAAATGAAATGAAATACTATCAAGTGGAGTAGAATGACAGATATGAATATAGATCGAGGTTTACATTTAGGTTTTCTTGCAAAAGCACGAGTGGCAGATCGTGAACGTTTTGACCTTCATCATTATAATCATCAACAAACTCTCAATCTTTTCCTAGCTCTCTAGATTCAAATTTATCCTGGTCATCCACATTTTCTTTTTCATTATCTTCAGAATCATGCATAG

mRNA sequence

GAAGGACCTATCACACGAGGTAGGAAGGACCGACGATCCCCGACCCGACGATCGAAATCTAAGGGTCCGGATGCAAGGGAGCATGTCGAAACTCGCCTTGCCAACCTTGAGCAAAGTCTCGAGGATGTCCAGCACACGGTAGAAGAGTTGGGTGATAACTACGAAGAGCTTATTCAGGAGAATGTGGAAATCTCCGCAGCAACCAAGGAGCTCGTGGCCGACCTTGGAAAAACATTCCAAAAGGATTTGAAAGAGTTGTCATCAACCGTAACCACTTTGAAGACATTTGTTGAAGGTGAGTTACGCGAACTCTATTCTAGGTATATTTCCCTAGATGCAAAGGTAGATACTCTTTGCATGGAATGTCGTTCCAAGCACTTTGGTGGAGACGGTCCATCCACCAGTACACACACCGCTGTGCAAGGCACTACTCACATAAAAGTGCCGAAACCTGACACATACAATGGGGTGAGGAATGCCACGGTTGTGGAAAACTTCCTCTTTGGCCTTGACCGATACTATGTAGCTGTCGGTGTTCGAGATGATGAGGCCAAGATAAACAATGCCCCGACATTCCTAAGGGATGCCGCACAACTTTGGTGGCGTCGAAGATACGCTGACCAAAATGGGAATGCCATCCAGACGTGGGAACAATTCAAAGCCGAACTAAGAAAGCACTTCGTTCCCCACAATGCTGAAATGGAGTCAAGAGCCAAACTTCGAAGTCTAAGACACACAGGTAACATTCTCGACTATGTGAAGGAATTTACCACTATTATGCTTGAAATTAGTGATCTGCCCGAGAAGGAAGCCCTATTCCAATTTAGAGATGGATTGAAAGATTGGGCCAAGGTTGAGCTAGACCGTCGCAATGCCGCCACTAAAATGAAAAAGTGGGCGGACCGGAAAAGGAGGGCTAGAGAGTACCAAGTAGGGGAAAAAGTAATGGTAAAGCTGCTACCAAACCAATTTAAATCCCTACGCAAGGTACATAAAGGCCTAATCCGAAGATACGAAGGACCCTTCTCTATCATTGAGAAAGTGGGCAAAGCAGCTTATCGATTGGAACTTCCTCCCAGACTGAAGATCCATAATGTCTTCCATGTGAGCATGTTGAAGCCTTTCTATGAAGACAAGGAGGATCCAAGCAGAGGTGAGTCCTCTCGTGCACCTACCGGCATGATCTCAGAGTTCGACAGGAAAATCAAGGAGATCTTAGCGGAGAGGAAGATACGAAGGAGAGGAGTTCCCAGTTATAACGAATATTTGATTGCTTGGGAAGGACTACCCGAAAGCGAAGCAAGTTGGGAAAAGGAAGACACCCTATGGCAATTTCAAGATGAAATCAGAAGATTTCAAGAAAGCGCAACGGGGACGTTGCGAAATCGAAATCATGCATAG

Coding sequence (CDS)

GAAGGACCTATCACACGAGGTAGGAAGGACCGACGATCCCCGACCCGACGATCGAAATCTAAGGGTCCGGATGCAAGGGAGCATGTCGAAACTCGCCTTGCCAACCTTGAGCAAAGTCTCGAGGATGTCCAGCACACGGTAGAAGAGTTGGGTGATAACTACGAAGAGCTTATTCAGGAGAATGTGGAAATCTCCGCAGCAACCAAGGAGCTCGTGGCCGACCTTGGAAAAACATTCCAAAAGGATTTGAAAGAGTTGTCATCAACCGTAACCACTTTGAAGACATTTGTTGAAGGTGAGTTACGCGAACTCTATTCTAGGTATATTTCCCTAGATGCAAAGGTAGATACTCTTTGCATGGAATGTCGTTCCAAGCACTTTGGTGGAGACGGTCCATCCACCAGTACACACACCGCTGTGCAAGGCACTACTCACATAAAAGTGCCGAAACCTGACACATACAATGGGGTGAGGAATGCCACGGTTGTGGAAAACTTCCTCTTTGGCCTTGACCGATACTATGTAGCTGTCGGTGTTCGAGATGATGAGGCCAAGATAAACAATGCCCCGACATTCCTAAGGGATGCCGCACAACTTTGGTGGCGTCGAAGATACGCTGACCAAAATGGGAATGCCATCCAGACGTGGGAACAATTCAAAGCCGAACTAAGAAAGCACTTCGTTCCCCACAATGCTGAAATGGAGTCAAGAGCCAAACTTCGAAGTCTAAGACACACAGGTAACATTCTCGACTATGTGAAGGAATTTACCACTATTATGCTTGAAATTAGTGATCTGCCCGAGAAGGAAGCCCTATTCCAATTTAGAGATGGATTGAAAGATTGGGCCAAGGTTGAGCTAGACCGTCGCAATGCCGCCACTAAAATGAAAAAGTGGGCGGACCGGAAAAGGAGGGCTAGAGAGTACCAAGTAGGGGAAAAAGTAATGGTAAAGCTGCTACCAAACCAATTTAAATCCCTACGCAAGGTACATAAAGGCCTAATCCGAAGATACGAAGGACCCTTCTCTATCATTGAGAAAGTGGGCAAAGCAGCTTATCGATTGGAACTTCCTCCCAGACTGAAGATCCATAATGTCTTCCATGTGAGCATGTTGAAGCCTTTCTATGAAGACAAGGAGGATCCAAGCAGAGGTGAGTCCTCTCGTGCACCTACCGGCATGATCTCAGAGTTCGACAGGAAAATCAAGGAGATCTTAGCGGAGAGGAAGATACGAAGGAGAGGAGTTCCCAGTTATAACGAATATTTGATTGCTTGGGAAGGACTACCCGAAAGCGAAGCAAGTTGGGAAAAGGAAGACACCCTATGGCAATTTCAAGATGAAATCAGAAGATTTCAAGAAAGCGCAACGGGGACGTTGCGAAATCGAAATCATGCATAG

Protein sequence

EGPITRGRKDRRSPTRRSKSKGPDAREHVETRLANLEQSLEDVQHTVEELGDNYEELIQENVEISAATKELVADLGKTFQKDLKELSSTVTTLKTFVEGELRELYSRYISLDAKVDTLCMECRSKHFGGDGPSTSTHTAVQGTTHIKVPKPDTYNGVRNATVVENFLFGLDRYYVAVGVRDDEAKINNAPTFLRDAAQLWWRRRYADQNGNAIQTWEQFKAELRKHFVPHNAEMESRAKLRSLRHTGNILDYVKEFTTIMLEISDLPEKEALFQFRDGLKDWAKVELDRRNAATKMKKWADRKRRAREYQVGEKVMVKLLPNQFKSLRKVHKGLIRRYEGPFSIIEKVGKAAYRLELPPRLKIHNVFHVSMLKPFYEDKEDPSRGESSRAPTGMISEFDRKIKEILAERKIRRRGVPSYNEYLIAWEGLPESEASWEKEDTLWQFQDEIRRFQESATGTLRNRNHA
Homology
[Close]
BLAST of CsaV3_1G031080 vs. NCBI nr
Match: XP_008446938.1 (PREDICTED: uncharacterized protein LOC103489499 [Cucumis melo])

HSP 1 Score: 427.2 bits (1097), Expect = 7.3e-116
Identity = 202/294 (68.71%), Postives = 241/294 (81.97%), Query Frame = 0 

Query: 1   EGPITRGRKDRRSPTRRSKSKGPDAREHVETRLANLEQSLXXXXXXXXXXXXXXXXXIQE 60
           EGP+TRGRK++ SPTRRSKSKGP  REHV+TRL NLEQ +                 + E
Sbjct: 16  EGPVTRGRKEQHSPTRRSKSKGPAVREHVDTRLTNLEQGMEDVQLAVGRLSENFEELVLE 75

Query: 61  NVEISAATKELVADLGKTFQKDLKELSSTVTTLKTFVEGELRELYSRYISLDAKVDTLCM 120
           N EI++  KE++ D+G+TFQK+LKEL+STVTTLK FVEGEL  L+++ IS + ++D LC+
Sbjct: 76  NAEITSVAKEMIEDMGRTFQKELKELASTVTTLKAFVEGELHNLHTKSISFETRLDALCV 135

Query: 121 ECRSKHFGGDGPSTSTHTAVQGTTHIKVPKPDTYNGVRNATVVENFLFGLDRYYVAVGVR 180
           ECRSKH G + PS STH    GT++IKVPKPD YNGVRN+TVV+NFLF L+RY+VA+GVR
Sbjct: 136 ECRSKHLGSNAPSMSTHPTTSGTSNIKVPKPDVYNGVRNSTVVDNFLFSLERYFVALGVR 195

Query: 181 DDEAKINNAPTFLRDAAQLWWRRRYADQNGNAIQTWEQFKAELRKHFVPHNAEMESRAKL 240
           DDEA+IN+ PTFLRDAAQLWWRR+YADQ+GNAI +WEQFK ELRKHFVPHNAE+ESR KL
Sbjct: 196 DDEARINHVPTFLRDAAQLWWRRKYADQSGNAIHSWEQFKTELRKHFVPHNAEIESRGKL 255

Query: 241 RSLRHTGNILDYVKEFTTIMLEISDLPEKEALFQFRDGLKDWAKVELDRRNAAT 295
           R LRHT +ILDYVKEFTT+MLEI DLPEKEALFQF+DGLKDWAK+ELDRRN  T
Sbjct: 256 RRLRHTRSILDYVKEFTTLMLEIGDLPEKEALFQFKDGLKDWAKIELDRRNVQT 309

[Close]
BLAST of CsaV3_1G031080 vs. NCBI nr
Match: XP_008455798.1 (PREDICTED: uncharacterized protein LOC103495894 [Cucumis melo])

HSP 1 Score: 361.3 bits (926), Expect = 4.9e-96
Identity = 166/218 (76.15%), Postives = 195/218 (89.45%), Query Frame = 0 

Query: 77  KTFQKDLKELSSTVTTLKTFVEGELRELYSRYISLDAKVDTLCMECRSKHFGGDGPSTST 136
           +TFQ++LKEL+STVTTLK FVEGEL  L+++ IS + ++D LC+ECRSKH G + PSTST
Sbjct: 3   RTFQEELKELASTVTTLKAFVEGELHNLHTKSISFETRLDALCVECRSKHLGSNAPSTST 62

Query: 137 HTAVQGTTHIKVPKPDTYNGVRNATVVENFLFGLDRYYVAVGVRDDEAKINNAPTFLRDA 196
           H    GT++IKVPKPD YNGVRNAT+V+NFLFGL+RY+VA+GVRDDEA+IN+APTFLRDA
Sbjct: 63  HPTTSGTSNIKVPKPDVYNGVRNATIVDNFLFGLERYFVALGVRDDEARINHAPTFLRDA 122

Query: 197 AQLWWRRRYADQNGNAIQTWEQFKAELRKHFVPHNAEMESRAKLRSLRHTGNILDYVKEF 256
           AQLWWRR+YADQ+GN I +WEQFK ELRKHFVPHNAE+ESR KLR LRHTG+ILDYVKEF
Sbjct: 123 AQLWWRRKYADQSGNTIHSWEQFKTELRKHFVPHNAEIESRGKLRRLRHTGSILDYVKEF 182

Query: 257 TTIMLEISDLPEKEALFQFRDGLKDWAKVELDRRNAAT 295
           TT+MLEI DLPEKEALFQF+DGLKDWAK+ELDRRN  T
Sbjct: 183 TTLMLEIGDLPEKEALFQFKDGLKDWAKIELDRRNVQT 220

[Close]
BLAST of CsaV3_1G031080 vs. NCBI nr
Match: XP_008460615.1 (PREDICTED: uncharacterized protein LOC103499392 [Cucumis melo])

HSP 1 Score: 329.7 bits (844), Expect = 1.6e-86
Identity = 156/237 (65.82%), Postives = 188/237 (79.32%), Query Frame = 0 

Query: 58  IQENVEISAATKELVADLGKTFQKDLKELSSTVTTLKTFVEGELRELYSRYISLDAKVDT 117
           +QEN EI++  KE++ D+G+TFQ++LKEL+STVTTLK FVEGEL  L+++ IS + ++D 
Sbjct: 19  VQENAEITSVAKEMIEDMGRTFQEELKELASTVTTLKAFVEGELHNLHTKSISFETRLDA 78

Query: 118 LCMECRSKHFGGDGPSTSTHTAVQGTTHIKVPKPDTYNGVRNATVVENFLFGLDRYYVAV 177
           LC+ECRSKH G + PSTSTH    GT++IKVPKPD YNGVRNATVV+NFLFGL+RY+VA+
Sbjct: 79  LCVECRSKHLGSNAPSTSTHPTTSGTSNIKVPKPDVYNGVRNATVVDNFLFGLERYFVAL 138

Query: 178 GVRDDEAKINNAPTFLRDAAQLWWRRRYADQNGNAIQTWEQFKAELRKHFVPHNAEMESR 237
           GVRDDEA+IN+APTFLRDAAQLWWRR+YADQ+GNAI +WEQFKAELRKHFVPHNAE+ESR
Sbjct: 139 GVRDDEARINHAPTFLRDAAQLWWRRKYADQSGNAIHSWEQFKAELRKHFVPHNAEIESR 198

Query: 238 AKLRSLRHTGNILDYVKEFTTIMLEISDLPEKEALFQFRDGLKDWAKVELDRRNAAT 295
                                      DLPEKEALFQF+DGLKDWAK+ELDRRN  T
Sbjct: 199 --------------------------GDLPEKEALFQFKDGLKDWAKIELDRRNVQT 229


HSP 2 Score: 280.0 bits (715), Expect = 1.4e-71
Identity = 131/160 (81.88%), Postives = 152/160 (95.00%), Query Frame = 0 

Query: 292  AATKMKKWADRKRRAREYQVGEKVMVKLLPNQFKSLRKVHKGLIRRYEGPFSIIEKVGKA 351
            AA +MKKWAD+KRR +EY++G+KV+VKLLPNQFKSLRKVHKGL+RRYEGPFSIIE+VGKA
Sbjct: 1262 AARRMKKWADKKRRPKEYEIGDKVLVKLLPNQFKSLRKVHKGLVRRYEGPFSIIERVGKA 1321

Query: 352  AYRLELPPRLKIHNVFHVSMLKPFYEDKEDPSRGESSRAPTGMISEFDRKIKEILAERKI 411
            AY++ELPPRLKIHNVFHVSMLKPF+ED+EDP+R ++SRAPTG+I EFDRKIKEILAERKI
Sbjct: 1322 AYKVELPPRLKIHNVFHVSMLKPFHEDQEDPNRSKTSRAPTGVIIEFDRKIKEILAERKI 1381

Query: 412  RRRGVPSYNEYLIAWEGLPESEASWEKEDTLWQFQDEIRR 452
            RRRGVPS++EYLI WEGLPESEASWE+ED LWQFQ EI +
Sbjct: 1382 RRRGVPSHSEYLILWEGLPESEASWEREDMLWQFQAEIEK 1421

[Close]
BLAST of CsaV3_1G031080 vs. NCBI nr
Match: XP_008442289.1 (PREDICTED: uncharacterized protein LOC103486198 [Cucumis melo])

HSP 1 Score: 328.6 bits (841), Expect = 3.5e-86
Identity = 168/294 (57.14%), Postives = 200/294 (68.03%), Query Frame = 0 

Query: 1   EGPITRGRKDRRSPTRRSKSKGPDAREHVETRLANLEQSLXXXXXXXXXXXXXXXXXIQE 60
           EGP+TRGRK++ S TRRSKSKGP  REHV TRL NLEQ +                 +QE
Sbjct: 16  EGPVTRGRKEQHSSTRRSKSKGPAVREHVNTRLTNLEQGMEDVQLAVGRLSDNFEELVQE 75

Query: 61  NVEISAATKELVADLGKTFQKDLKELSSTVTTLKTFVEGELRELYSRYISLDAKVDTLCM 120
           N EI++  KE++ D+G+TFQK+LKEL+STVTTLK FVEGEL +LY++ ISL+ ++D LC+
Sbjct: 76  NAEITSVAKEMIEDMGRTFQKELKELASTVTTLKAFVEGELHDLYTKSISLETRLDALCV 135

Query: 121 ECRSKHFGGDGPSTSTHTAVQGTTHIKVPKPDTYNGVRNATVVENFLFGLDRYYVAVGVR 180
           ECRSKH G + PSTSTH    GT++IKVPKPD  NG                        
Sbjct: 136 ECRSKHLGSNAPSTSTHPTTSGTSNIKVPKPDIDNG------------------------ 195

Query: 181 DDEAKINNAPTFLRDAAQLWWRRRYADQNGNAIQTWEQFKAELRKHFVPHNAEMESRAKL 240
                         D+AQLW RR+YADQ  NA+ +WEQFK ELRKHFVPHNAE+ESR KL
Sbjct: 196 --------------DSAQLWCRRKYADQGENALHSWEQFKTELRKHFVPHNAEIESRGKL 255

Query: 241 RSLRHTGNILDYVKEFTTIMLEISDLPEKEALFQFRDGLKDWAKVELDRRNAAT 295
             LRHT +ILDYVKEFTT+MLEI DLPEKEALFQF+ GLKDWAK+ELD RN  T
Sbjct: 256 HPLRHTDSILDYVKEFTTLMLEIGDLPEKEALFQFKYGLKDWAKIELDHRNVQT 271

[Close]
BLAST of CsaV3_1G031080 vs. NCBI nr
Match: CAN80068.1 (hypothetical protein VITISV_019029 [Vitis vinifera])

HSP 1 Score: 243.8 bits (621), Expect = 1.1e-60
Identity = 124/205 (60.49%), Postives = 155/205 (75.61%), Query Frame = 0 

Query: 261 LEISDLPEKEALFQFRDG---LKDWAKVELDRRNAATKMKKWADRKRRAREYQVGEKVMV 320
           L I    +  A F+F  G     D A+  LD+  AA KMKKWAD+KRR  EY+VG+ V+V
Sbjct: 588 LTIGYTGKSPAAFKFAKGWHEQADIARSYLDK--AAKKMKKWADKKRRHTEYKVGDMVLV 647

Query: 321 KLLPNQFKSLRKVHKGLIRRYEGPFSIIEKVGKAAYRLELPPRLKIHNVFHVSMLKPFYE 380
           KLLP QFKSLR VHKGL+RRYEGPF I+ KVGK +Y++ELPPRLKIH VFH S LKP++E
Sbjct: 648 KLLPQQFKSLRPVHKGLVRRYEGPFPILGKVGKVSYKVELPPRLKIHLVFHASYLKPYHE 707

Query: 381 DKEDPSRGESSRAPTGMISEFDRKIKEILAERKIRRRGVPSYNEYLIAWEGLPESEASWE 440
           DK+DPSRG S RAPT +++ +D++++ ILA+R IRRRGVP   EYL+ W+GLPESEASWE
Sbjct: 708 DKDDPSRGLSKRAPTAVVTSYDKEVELILADRVIRRRGVPPATEYLVKWKGLPESEASWE 767

Query: 441 KEDTLWQFQDEIRRFQ-ESATGTLR 462
             + LWQFQ++I RF+ E AT T R
Sbjct: 768 PAEALWQFQEQIERFRAEGATRTAR 790

[Close]
BLAST of CsaV3_1G031080 vs. TrEMBL
Match: tr|A0A1S3BG92|A0A1S3BG92_CUCME (uncharacterized protein LOC103489499 OS=Cucumis melo OX=3656 GN=LOC103489499 PE=4 SV=1)

HSP 1 Score: 427.2 bits (1097), Expect = 4.8e-116
Identity = 202/294 (68.71%), Postives = 241/294 (81.97%), Query Frame = 0 

Query: 1   EGPITRGRKDRRSPTRRSKSKGPDAREHVETRLANLEQSLXXXXXXXXXXXXXXXXXIQE 60
           EGP+TRGRK++ SPTRRSKSKGP  REHV+TRL NLEQ +                 + E
Sbjct: 16  EGPVTRGRKEQHSPTRRSKSKGPAVREHVDTRLTNLEQGMEDVQLAVGRLSENFEELVLE 75

Query: 61  NVEISAATKELVADLGKTFQKDLKELSSTVTTLKTFVEGELRELYSRYISLDAKVDTLCM 120
           N EI++  KE++ D+G+TFQK+LKEL+STVTTLK FVEGEL  L+++ IS + ++D LC+
Sbjct: 76  NAEITSVAKEMIEDMGRTFQKELKELASTVTTLKAFVEGELHNLHTKSISFETRLDALCV 135

Query: 121 ECRSKHFGGDGPSTSTHTAVQGTTHIKVPKPDTYNGVRNATVVENFLFGLDRYYVAVGVR 180
           ECRSKH G + PS STH    GT++IKVPKPD YNGVRN+TVV+NFLF L+RY+VA+GVR
Sbjct: 136 ECRSKHLGSNAPSMSTHPTTSGTSNIKVPKPDVYNGVRNSTVVDNFLFSLERYFVALGVR 195

Query: 181 DDEAKINNAPTFLRDAAQLWWRRRYADQNGNAIQTWEQFKAELRKHFVPHNAEMESRAKL 240
           DDEA+IN+ PTFLRDAAQLWWRR+YADQ+GNAI +WEQFK ELRKHFVPHNAE+ESR KL
Sbjct: 196 DDEARINHVPTFLRDAAQLWWRRKYADQSGNAIHSWEQFKTELRKHFVPHNAEIESRGKL 255

Query: 241 RSLRHTGNILDYVKEFTTIMLEISDLPEKEALFQFRDGLKDWAKVELDRRNAAT 295
           R LRHT +ILDYVKEFTT+MLEI DLPEKEALFQF+DGLKDWAK+ELDRRN  T
Sbjct: 256 RRLRHTRSILDYVKEFTTLMLEIGDLPEKEALFQFKDGLKDWAKIELDRRNVQT 309

[Close]
BLAST of CsaV3_1G031080 vs. TrEMBL
Match: tr|A0A1S3C1B3|A0A1S3C1B3_CUCME (uncharacterized protein LOC103495894 OS=Cucumis melo OX=3656 GN=LOC103495894 PE=4 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 3.3e-96
Identity = 166/218 (76.15%), Postives = 195/218 (89.45%), Query Frame = 0 

Query: 77  KTFQKDLKELSSTVTTLKTFVEGELRELYSRYISLDAKVDTLCMECRSKHFGGDGPSTST 136
           +TFQ++LKEL+STVTTLK FVEGEL  L+++ IS + ++D LC+ECRSKH G + PSTST
Sbjct: 3   RTFQEELKELASTVTTLKAFVEGELHNLHTKSISFETRLDALCVECRSKHLGSNAPSTST 62

Query: 137 HTAVQGTTHIKVPKPDTYNGVRNATVVENFLFGLDRYYVAVGVRDDEAKINNAPTFLRDA 196
           H    GT++IKVPKPD YNGVRNAT+V+NFLFGL+RY+VA+GVRDDEA+IN+APTFLRDA
Sbjct: 63  HPTTSGTSNIKVPKPDVYNGVRNATIVDNFLFGLERYFVALGVRDDEARINHAPTFLRDA 122

Query: 197 AQLWWRRRYADQNGNAIQTWEQFKAELRKHFVPHNAEMESRAKLRSLRHTGNILDYVKEF 256
           AQLWWRR+YADQ+GN I +WEQFK ELRKHFVPHNAE+ESR KLR LRHTG+ILDYVKEF
Sbjct: 123 AQLWWRRKYADQSGNTIHSWEQFKTELRKHFVPHNAEIESRGKLRRLRHTGSILDYVKEF 182

Query: 257 TTIMLEISDLPEKEALFQFRDGLKDWAKVELDRRNAAT 295
           TT+MLEI DLPEKEALFQF+DGLKDWAK+ELDRRN  T
Sbjct: 183 TTLMLEIGDLPEKEALFQFKDGLKDWAKIELDRRNVQT 220

[Close]
BLAST of CsaV3_1G031080 vs. TrEMBL
Match: tr|A0A1S3CE17|A0A1S3CE17_CUCME (uncharacterized protein LOC103499392 OS=Cucumis melo OX=3656 GN=LOC103499392 PE=4 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 1.1e-86
Identity = 156/237 (65.82%), Postives = 188/237 (79.32%), Query Frame = 0 

Query: 58  IQENVEISAATKELVADLGKTFQKDLKELSSTVTTLKTFVEGELRELYSRYISLDAKVDT 117
           +QEN EI++  KE++ D+G+TFQ++LKEL+STVTTLK FVEGEL  L+++ IS + ++D 
Sbjct: 19  VQENAEITSVAKEMIEDMGRTFQEELKELASTVTTLKAFVEGELHNLHTKSISFETRLDA 78

Query: 118 LCMECRSKHFGGDGPSTSTHTAVQGTTHIKVPKPDTYNGVRNATVVENFLFGLDRYYVAV 177
           LC+ECRSKH G + PSTSTH    GT++IKVPKPD YNGVRNATVV+NFLFGL+RY+VA+
Sbjct: 79  LCVECRSKHLGSNAPSTSTHPTTSGTSNIKVPKPDVYNGVRNATVVDNFLFGLERYFVAL 138

Query: 178 GVRDDEAKINNAPTFLRDAAQLWWRRRYADQNGNAIQTWEQFKAELRKHFVPHNAEMESR 237
           GVRDDEA+IN+APTFLRDAAQLWWRR+YADQ+GNAI +WEQFKAELRKHFVPHNAE+ESR
Sbjct: 139 GVRDDEARINHAPTFLRDAAQLWWRRKYADQSGNAIHSWEQFKAELRKHFVPHNAEIESR 198

Query: 238 AKLRSLRHTGNILDYVKEFTTIMLEISDLPEKEALFQFRDGLKDWAKVELDRRNAAT 295
                                      DLPEKEALFQF+DGLKDWAK+ELDRRN  T
Sbjct: 199 --------------------------GDLPEKEALFQFKDGLKDWAKIELDRRNVQT 229


HSP 2 Score: 280.0 bits (715), Expect = 9.6e-72
Identity = 131/160 (81.88%), Postives = 152/160 (95.00%), Query Frame = 0 

Query: 292  AATKMKKWADRKRRAREYQVGEKVMVKLLPNQFKSLRKVHKGLIRRYEGPFSIIEKVGKA 351
            AA +MKKWAD+KRR +EY++G+KV+VKLLPNQFKSLRKVHKGL+RRYEGPFSIIE+VGKA
Sbjct: 1262 AARRMKKWADKKRRPKEYEIGDKVLVKLLPNQFKSLRKVHKGLVRRYEGPFSIIERVGKA 1321

Query: 352  AYRLELPPRLKIHNVFHVSMLKPFYEDKEDPSRGESSRAPTGMISEFDRKIKEILAERKI 411
            AY++ELPPRLKIHNVFHVSMLKPF+ED+EDP+R ++SRAPTG+I EFDRKIKEILAERKI
Sbjct: 1322 AYKVELPPRLKIHNVFHVSMLKPFHEDQEDPNRSKTSRAPTGVIIEFDRKIKEILAERKI 1381

Query: 412  RRRGVPSYNEYLIAWEGLPESEASWEKEDTLWQFQDEIRR 452
            RRRGVPS++EYLI WEGLPESEASWE+ED LWQFQ EI +
Sbjct: 1382 RRRGVPSHSEYLILWEGLPESEASWEREDMLWQFQAEIEK 1421

[Close]
BLAST of CsaV3_1G031080 vs. TrEMBL
Match: tr|A0A1S3B5C5|A0A1S3B5C5_CUCME (uncharacterized protein LOC103486198 OS=Cucumis melo OX=3656 GN=LOC103486198 PE=4 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 2.3e-86
Identity = 168/294 (57.14%), Postives = 200/294 (68.03%), Query Frame = 0 

Query: 1   EGPITRGRKDRRSPTRRSKSKGPDAREHVETRLANLEQSLXXXXXXXXXXXXXXXXXIQE 60
           EGP+TRGRK++ S TRRSKSKGP  REHV TRL NLEQ +                 +QE
Sbjct: 16  EGPVTRGRKEQHSSTRRSKSKGPAVREHVNTRLTNLEQGMEDVQLAVGRLSDNFEELVQE 75

Query: 61  NVEISAATKELVADLGKTFQKDLKELSSTVTTLKTFVEGELRELYSRYISLDAKVDTLCM 120
           N EI++  KE++ D+G+TFQK+LKEL+STVTTLK FVEGEL +LY++ ISL+ ++D LC+
Sbjct: 76  NAEITSVAKEMIEDMGRTFQKELKELASTVTTLKAFVEGELHDLYTKSISLETRLDALCV 135

Query: 121 ECRSKHFGGDGPSTSTHTAVQGTTHIKVPKPDTYNGVRNATVVENFLFGLDRYYVAVGVR 180
           ECRSKH G + PSTSTH    GT++IKVPKPD  NG                        
Sbjct: 136 ECRSKHLGSNAPSTSTHPTTSGTSNIKVPKPDIDNG------------------------ 195

Query: 181 DDEAKINNAPTFLRDAAQLWWRRRYADQNGNAIQTWEQFKAELRKHFVPHNAEMESRAKL 240
                         D+AQLW RR+YADQ  NA+ +WEQFK ELRKHFVPHNAE+ESR KL
Sbjct: 196 --------------DSAQLWCRRKYADQGENALHSWEQFKTELRKHFVPHNAEIESRGKL 255

Query: 241 RSLRHTGNILDYVKEFTTIMLEISDLPEKEALFQFRDGLKDWAKVELDRRNAAT 295
             LRHT +ILDYVKEFTT+MLEI DLPEKEALFQF+ GLKDWAK+ELD RN  T
Sbjct: 256 HPLRHTDSILDYVKEFTTLMLEIGDLPEKEALFQFKYGLKDWAKIELDHRNVQT 271

[Close]
BLAST of CsaV3_1G031080 vs. TrEMBL
Match: tr|A5AHG7|A5AHG7_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_019029 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 7.6e-61
Identity = 124/205 (60.49%), Postives = 155/205 (75.61%), Query Frame = 0 

Query: 261 LEISDLPEKEALFQFRDG---LKDWAKVELDRRNAATKMKKWADRKRRAREYQVGEKVMV 320
           L I    +  A F+F  G     D A+  LD+  AA KMKKWAD+KRR  EY+VG+ V+V
Sbjct: 588 LTIGYTGKSPAAFKFAKGWHEQADIARSYLDK--AAKKMKKWADKKRRHTEYKVGDMVLV 647

Query: 321 KLLPNQFKSLRKVHKGLIRRYEGPFSIIEKVGKAAYRLELPPRLKIHNVFHVSMLKPFYE 380
           KLLP QFKSLR VHKGL+RRYEGPF I+ KVGK +Y++ELPPRLKIH VFH S LKP++E
Sbjct: 648 KLLPQQFKSLRPVHKGLVRRYEGPFPILGKVGKVSYKVELPPRLKIHLVFHASYLKPYHE 707

Query: 381 DKEDPSRGESSRAPTGMISEFDRKIKEILAERKIRRRGVPSYNEYLIAWEGLPESEASWE 440
           DK+DPSRG S RAPT +++ +D++++ ILA+R IRRRGVP   EYL+ W+GLPESEASWE
Sbjct: 708 DKDDPSRGLSKRAPTAVVTSYDKEVELILADRVIRRRGVPPATEYLVKWKGLPESEASWE 767

Query: 441 KEDTLWQFQDEIRRFQ-ESATGTLR 462
             + LWQFQ++I RF+ E AT T R
Sbjct: 768 PAEALWQFQEQIERFRAEGATRTAR 790

The following BLAST results are available for this feature:
BLAST of CsaV3_1G031080 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008446938.17.3e-11668.71PREDICTED: uncharacterized protein LOC103489499 [Cucumis melo][more]
XP_008455798.14.9e-9676.15PREDICTED: uncharacterized protein LOC103495894 [Cucumis melo][more]
XP_008460615.11.6e-8665.82PREDICTED: uncharacterized protein LOC103499392 [Cucumis melo][more]
XP_008442289.13.5e-8657.14PREDICTED: uncharacterized protein LOC103486198 [Cucumis melo][more]
CAN80068.11.1e-6060.49hypothetical protein VITISV_019029 [Vitis vinifera][more]
BLAST of CsaV3_1G031080 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G031080 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G031080 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BG92|A0A1S3BG92_CUCME4.8e-11668.71uncharacterized protein LOC103489499 OS=Cucumis melo OX=3656 GN=LOC103489499 PE=... [more]
tr|A0A1S3C1B3|A0A1S3C1B3_CUCME3.3e-9676.15uncharacterized protein LOC103495894 OS=Cucumis melo OX=3656 GN=LOC103495894 PE=... [more]
tr|A0A1S3CE17|A0A1S3CE17_CUCME1.1e-8665.82uncharacterized protein LOC103499392 OS=Cucumis melo OX=3656 GN=LOC103499392 PE=... [more]
tr|A0A1S3B5C5|A0A1S3B5C5_CUCME2.3e-8657.14uncharacterized protein LOC103486198 OS=Cucumis melo OX=3656 GN=LOC103486198 PE=... [more]
tr|A5AHG7|A5AHG7_VITVI7.6e-6160.49Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_019029 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR016197Chromo-like_dom_sf
IPR005162Retrotrans_gag_dom
IPR023780Chromo_domain
IPR000953Chromo/chromo_shadow_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G031080.1CsaV3_1G031080.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 26..67
NoneNo IPR availableGENE3DG3DSA:2.40.50.40coord: 401..457
e-value: 2.7E-10
score: 41.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28
NoneNo IPR availablePANTHERPTHR44369FAMILY NOT NAMEDcoord: 272..441
NoneNo IPR availablePANTHERPTHR44369:SF2SUBFAMILY NOT NAMEDcoord: 272..441
IPR000953Chromo/chromo shadow domainSMARTSM00298chromo_7coord: 399..457
e-value: 0.002
score: 27.4
IPR000953Chromo/chromo shadow domainPROSITEPS50013CHROMO_2coord: 400..464
score: 11.2
IPR000953Chromo/chromo shadow domainCDDcd00024CHROMOcoord: 401..454
e-value: 4.73195E-8
score: 48.7995
IPR023780Chromo domainPFAMPF00385Chromocoord: 402..454
e-value: 4.4E-9
score: 36.0
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 189..281
e-value: 6.4E-17
score: 61.5
IPR016197Chromo-like domain superfamilySUPERFAMILYSSF54160Chromo domain-likecoord: 362..455

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G031080Silver-seed gourdcarcucB0040
CsaV3_1G031080Silver-seed gourdcarcucB0144
CsaV3_1G031080Cucumber (Gy14) v2cgybcucB001
CsaV3_1G031080Cucurbita maxima (Rimu)cmacucB0073
CsaV3_1G031080Cucurbita maxima (Rimu)cmacucB0116
CsaV3_1G031080Cucurbita moschata (Rifu)cmocucB0060
CsaV3_1G031080Cucurbita moschata (Rifu)cmocucB0104
CsaV3_1G031080Cucurbita pepo (Zucchini)cpecucB0434
CsaV3_1G031080Cucurbita pepo (Zucchini)cpecucB0800
CsaV3_1G031080Wild cucumber (PI 183967)cpicucB000
CsaV3_1G031080Bottle gourd (USVL1VR-Ls)cuclsiB072
CsaV3_1G031080Melon (DHL92) v3.5.1cucmeB058
CsaV3_1G031080Melon (DHL92) v3.6.1cucmedB055
CsaV3_1G031080Watermelon (Charleston Gray)cucwcgB078
CsaV3_1G031080Watermelon (97103) v1cucwmB095
CsaV3_1G031080Watermelon (97103) v2cucwmbB067
CsaV3_1G031080Wax gourdcucwgoB108