CsaV3_1G030950 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G030950
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 17978527 .. 17978880 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTCCTCTTATCCAAAACACAAATTTCAAAACATTTAGCCAGATTTTACTTTTTATACTCAAATTAGAAACATGTCTCACAAAAGGTGGCTCAGATGGCTCGAATGAGGGAAGGGGAGGGGAGGCTCGGGTAAAGGGGCTTGACTTAGACGAGGGACGCGCCGATGAACGGATGGAGAGACTCGATCAGACTTCACGCAGCGTGGTCAAAATGAAGACGACAGCCGCGGACGAGGCATGTAGTGCGTGGAGGAGGATCGACATAGATGCACAACGAGAGATATGGACTTGCTTGCAGCATCAAGTGGCATCGTTTGAGTGGAACAATGGGCGACGAATGTTCGAACCTTAA

mRNA sequence

ATGTCTCCTCTTATCCAAAACACAAATTTCAAAACATTTAGCCAGATTTTACTTTTTATACTCAAATTAGAAACATGTCTCACAAAAGGTGGCTCAGATGGCTCGAATGAGGGAAGGGGAGGGGAGGCTCGGGTAAAGGGGCTTGACTTAGACGAGGGACGCGCCGATGAACGGATGGAGAGACTCGATCAGACTTCACGCAGCGTGGTCAAAATGAAGACGACAGCCGCGGACGAGGCATGTAGTGCGTGGAGGAGGATCGACATAGATGCACAACGAGAGATATGGACTTGCTTGCAGCATCAAGTGGCATCGTTTGAGTGGAACAATGGGCGACGAATGTTCGAACCTTAA

Coding sequence (CDS)

ATGTCTCCTCTTATCCAAAACACAAATTTCAAAACATTTAGCCAGATTTTACTTTTTATACTCAAATTAGAAACATGTCTCACAAAAGGTGGCTCAGATGGCTCGAATGAGGGAAGGGGAGGGGAGGCTCGGGTAAAGGGGCTTGACTTAGACGAGGGACGCGCCGATGAACGGATGGAGAGACTCGATCAGACTTCACGCAGCGTGGTCAAAATGAAGACGACAGCCGCGGACGAGGCATGTAGTGCGTGGAGGAGGATCGACATAGATGCACAACGAGAGATATGGACTTGCTTGCAGCATCAAGTGGCATCGTTTGAGTGGAACAATGGGCGACGAATGTTCGAACCTTAA

Protein sequence

MSPLIQNTNFKTFSQILLFILKLETCLTKGGSDGSNEGRGGEARVKGLDLDEGRADERMERLDQTSRSVVKMKTTAADEACSAWRRIDIDAQREIWTCLQHQVASFEWNNGRRMFEP
Homology
[Close]
BLAST of CsaV3_1G030950 vs. NCBI nr
Match: KGN65385.1 (hypothetical protein Csa_1G397640 [Cucumis sativus])

HSP 1 Score: 239.2 bits (609), Expect = 7.1e-60
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0 

Query: 1   MSPLIQNTNFKTFSQILLFILKLETCLTKGGSDGSNEGRGGEARVKGLDLDEGRADERME 60
           MSPLIQNTNFKTFSQILLFILKLETCLTKGGSDGSNEGRGGEARVKGLDLDEGRADERME
Sbjct: 1   MSPLIQNTNFKTFSQILLFILKLETCLTKGGSDGSNEGRGGEARVKGLDLDEGRADERME 60

Query: 61  RLDQTSRSVVKMKTTAADEACSAWRRIDIDAQREIWTCLQHQVASFEWNNGRRMFEP 118
           RLDQTSRSVVKMKTTAADEACSAWRRIDIDAQREIWTCLQHQVASFEWNNGRRMFEP
Sbjct: 61  RLDQTSRSVVKMKTTAADEACSAWRRIDIDAQREIWTCLQHQVASFEWNNGRRMFEP 117

[Close]
BLAST of CsaV3_1G030950 vs. TrEMBL
Match: tr|A0A0A0LTY5|A0A0A0LTY5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G397640 PE=4 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 4.7e-60
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0 

Query: 1   MSPLIQNTNFKTFSQILLFILKLETCLTKGGSDGSNEGRGGEARVKGLDLDEGRADERME 60
           MSPLIQNTNFKTFSQILLFILKLETCLTKGGSDGSNEGRGGEARVKGLDLDEGRADERME
Sbjct: 1   MSPLIQNTNFKTFSQILLFILKLETCLTKGGSDGSNEGRGGEARVKGLDLDEGRADERME 60

Query: 61  RLDQTSRSVVKMKTTAADEACSAWRRIDIDAQREIWTCLQHQVASFEWNNGRRMFEP 118
           RLDQTSRSVVKMKTTAADEACSAWRRIDIDAQREIWTCLQHQVASFEWNNGRRMFEP
Sbjct: 61  RLDQTSRSVVKMKTTAADEACSAWRRIDIDAQREIWTCLQHQVASFEWNNGRRMFEP 117

The following BLAST results are available for this feature:
BLAST of CsaV3_1G030950 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN65385.17.1e-60100.00hypothetical protein Csa_1G397640 [Cucumis sativus][more]
BLAST of CsaV3_1G030950 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G030950 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G030950 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LTY5|A0A0A0LTY5_CUCSA4.7e-60100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G397640 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G030950.1CsaV3_1G030950.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 30..50

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G030950CSPI01G19610Wild cucumber (PI 183967)cpicucB000
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G030950Cucumber (Chinese Long) v3cuccucB009
CsaV3_1G030950Silver-seed gourdcarcucB0040
CsaV3_1G030950Silver-seed gourdcarcucB0144
CsaV3_1G030950Silver-seed gourdcarcucB0603
CsaV3_1G030950Cucumber (Gy14) v2cgybcucB001
CsaV3_1G030950Cucumber (Gy14) v2cgybcucB059
CsaV3_1G030950Cucumber (Gy14) v1cgycucB155
CsaV3_1G030950Cucumber (Gy14) v1cgycucB353
CsaV3_1G030950Cucurbita maxima (Rimu)cmacucB0073
CsaV3_1G030950Cucurbita maxima (Rimu)cmacucB0116
CsaV3_1G030950Cucurbita moschata (Rifu)cmocucB0060
CsaV3_1G030950Cucurbita moschata (Rifu)cmocucB0104
CsaV3_1G030950Cucurbita pepo (Zucchini)cpecucB0105
CsaV3_1G030950Cucurbita pepo (Zucchini)cpecucB0434
CsaV3_1G030950Cucurbita pepo (Zucchini)cpecucB0800
CsaV3_1G030950Wild cucumber (PI 183967)cpicucB073
CsaV3_1G030950Bottle gourd (USVL1VR-Ls)cuclsiB010
CsaV3_1G030950Bottle gourd (USVL1VR-Ls)cuclsiB072
CsaV3_1G030950Melon (DHL92) v3.5.1cucmeB058
CsaV3_1G030950Melon (DHL92) v3.5.1cucmeB082
CsaV3_1G030950Melon (DHL92) v3.6.1cucmedB055
CsaV3_1G030950Melon (DHL92) v3.6.1cucmedB076
CsaV3_1G030950Watermelon (Charleston Gray)cucwcgB009
CsaV3_1G030950Watermelon (Charleston Gray)cucwcgB078
CsaV3_1G030950Watermelon (97103) v1cucwmB090
CsaV3_1G030950Watermelon (97103) v1cucwmB095
CsaV3_1G030950Watermelon (97103) v2cucwmbB019
CsaV3_1G030950Watermelon (97103) v2cucwmbB067
CsaV3_1G030950Wax gourdcucwgoB108