CsaV3_1G030740 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G030740
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 17718747 .. 17719345 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAAGCAGGAAAGAATGCAAAAAGCAAAGGCTTCGGGCACCGCCCACCTGCGGGTGACGAGACTATTTTGGGCTGACAGCCTTGTCCTTTGTCTTCCATCAACTAATATTATATTATATAACAGTGGCATGGATGAAGATGGGTTTTCAATTATTGGAGCCCATCACTTCATTTCTCTCATCACCTTTTAAATTATTGAAATTTTTCTTTCCATCCTTTTCTTTTTCTTTTTAAAAATAATTATTGATGTAAACATGGTTTTAATTTAAAGTCTAAAATTTTATGTCAATTGACAGTATCAATATAGTAGGAAGAATACCGCCGTCCATTGTAACTATTCTTTTAAAATAAAATCTTGATTCAAACTTTAAATTGATATACTTATCAAAATTTGGTTCTTAGTTTATGTAAAAAGAACTTAAAATGATTTTGTAAATGGATAGTTAGTTTGGTATGTAAAGTTATATGGTGCTTATGGGCCATGTGAGGAAGGGGTGTTTCAGGAAATTCAGCTAGGGGGGGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGGGATTCAAGGAGTCATGTTATGCACGTGCGAATCACGTGAGTTAA

mRNA sequence

ATGAGAAGCAGGAAAGAATGCAAAAAGCAAAGGCTTCGGGCACCGCCCACCTGCGGTATCAATATAGTAGGAAGAATACCGCCGTCCATTTTAGTTTGGTATGTAAAGTTATATGGTGCTTATGGGCCATGTGAGGAAGGGGTGTTTCAGGAAATTCAGCTAGGGGGGGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGGGATTCAAGGAGTCATGTTATGCACGTGCGAATCACGTGAGTTAA

Coding sequence (CDS)

ATGAGAAGCAGGAAAGAATGCAAAAAGCAAAGGCTTCGGGCACCGCCCACCTGCGGTATCAATATAGTAGGAAGAATACCGCCGTCCATTTTAGTTTGGTATGTAAAGTTATATGGTGCTTATGGGCCATGTGAGGAAGGGGTGTTTCAGGAAATTCAGCTAGGGGGGGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGGGATTCAAGGAGTCATGTTATGCACGTGCGAATCACGTGAGTTAA

Protein sequence

MRSRKECKKQRLRAPPTCGINIVGRIPPSILVWYVKLYGAYGPCEEGVFQEIQLGGERRGEERRGEGFKESCYARANHVS
Homology
[Close]
BLAST of CsaV3_1G030740 vs. NCBI nr
Match: KGN65365.1 (hypothetical protein Csa_1G384020 [Cucumis sativus])

HSP 1 Score: 126.3 bits (316), Expect = 4.6e-26
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0 

Query: 1  MRSRKECKKQRLRAPPTCGINIVGRIPPSILVWYVKLYGAYGPCEEGVFQEIQLGGER 59
          MRSRKECKKQRLRAPPTCGINIVGRIPPSILVWYVKLYGAYGPCEEGVFQEIQLGGER
Sbjct: 1  MRSRKECKKQRLRAPPTCGINIVGRIPPSILVWYVKLYGAYGPCEEGVFQEIQLGGER 58

[Close]
BLAST of CsaV3_1G030740 vs. TrEMBL
Match: tr|A0A0A0LTW4|A0A0A0LTW4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G384020 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 3.1e-26
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0 

Query: 1  MRSRKECKKQRLRAPPTCGINIVGRIPPSILVWYVKLYGAYGPCEEGVFQEIQLGGER 59
          MRSRKECKKQRLRAPPTCGINIVGRIPPSILVWYVKLYGAYGPCEEGVFQEIQLGGER
Sbjct: 1  MRSRKECKKQRLRAPPTCGINIVGRIPPSILVWYVKLYGAYGPCEEGVFQEIQLGGER 58

The following BLAST results are available for this feature:
BLAST of CsaV3_1G030740 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN65365.14.6e-26100.00hypothetical protein Csa_1G384020 [Cucumis sativus][more]
BLAST of CsaV3_1G030740 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G030740 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G030740 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LTW4|A0A0A0LTW4_CUCSA3.1e-26100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G384020 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G030740.1CsaV3_1G030740.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G030740Cucurbita pepo (Zucchini)cpecucB0105
CsaV3_1G030740Cucurbita pepo (Zucchini)cpecucB0434
CsaV3_1G030740Cucurbita pepo (Zucchini)cpecucB0800
CsaV3_1G030740Wild cucumber (PI 183967)cpicucB000
CsaV3_1G030740Wild cucumber (PI 183967)cpicucB073
CsaV3_1G030740Bottle gourd (USVL1VR-Ls)cuclsiB010
CsaV3_1G030740Bottle gourd (USVL1VR-Ls)cuclsiB072
CsaV3_1G030740Melon (DHL92) v3.5.1cucmeB058
CsaV3_1G030740Melon (DHL92) v3.5.1cucmeB082
CsaV3_1G030740Melon (DHL92) v3.6.1cucmedB055
CsaV3_1G030740Melon (DHL92) v3.6.1cucmedB076
CsaV3_1G030740Watermelon (Charleston Gray)cucwcgB009
CsaV3_1G030740Watermelon (Charleston Gray)cucwcgB078
CsaV3_1G030740Watermelon (97103) v1cucwmB090
CsaV3_1G030740Watermelon (97103) v1cucwmB095
CsaV3_1G030740Watermelon (97103) v2cucwmbB019
CsaV3_1G030740Watermelon (97103) v2cucwmbB067
CsaV3_1G030740Wax gourdcucwgoB108
CsaV3_1G030740Cucumber (Chinese Long) v3cuccucB009
CsaV3_1G030740Silver-seed gourdcarcucB0039
CsaV3_1G030740Silver-seed gourdcarcucB0040
CsaV3_1G030740Silver-seed gourdcarcucB0144
CsaV3_1G030740Silver-seed gourdcarcucB0603
CsaV3_1G030740Cucumber (Gy14) v2cgybcucB001
CsaV3_1G030740Cucumber (Gy14) v2cgybcucB059
CsaV3_1G030740Cucumber (Gy14) v1cgycucB155
CsaV3_1G030740Cucumber (Gy14) v1cgycucB353
CsaV3_1G030740Cucurbita maxima (Rimu)cmacucB0073
CsaV3_1G030740Cucurbita maxima (Rimu)cmacucB0110
CsaV3_1G030740Cucurbita maxima (Rimu)cmacucB0116
CsaV3_1G030740Cucurbita moschata (Rifu)cmocucB0060
CsaV3_1G030740Cucurbita moschata (Rifu)cmocucB0104