CsaV3_1G030720 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G030720
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionGag-pro-like protein
Locationchr1 : 17675736 .. 17676078 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
GCAACAGAAGAAGCTTTAGAGTGTTCTTTTCGCTCTTTTGAAATTGCTCATGCAACTATGATGGAAGCAACTGCAGGTGAAGTAATAAAGTCACACATGCCTAAAGTTACGACAAAAAGGATGATGAGAAGTGGAGGATATGGTTTGAATCAAAGCTTGGAAACACTTCTAAATACACCAAGCAATGAAGGGAGATTTGGTTTGGGTTATATGCCAAACGTATATGATAAAATTAGGCTTCAAAAAGAAAAGAAGAAAAGGTGTTTGGAAAAGCAAGGGATGATGGTGTTTGATCCAAGTCTAAAATTTATACCAGCATTATATGATACTTTCAAGAGTGCTG

mRNA sequence

GCAACAGAAGAAGCTTTAGAGTGTTCTTTTCGCTCTTTTGAAATTGCTCATGCAACTATGATGGAAGCAACTGCAGGTGAAGTAATAAAGTCACACATGCCTAAAGTTACGACAAAAAGGATGATGAGAAGTGGAGGATATGGTTTGAATCAAAGCTTGGAAACACTTCTAAATACACCAAGCAATGAAGGGAGATTTGGTTTGGGTTATATGCCAAACGTATATGATAAAATTAGGCTTCAAAAAGAAAAGAAGAAAAGGTGTTTGGAAAAGCAAGGGATGATGGTGTTTGATCCAAGTCTAAAATTTATACCAGCATTATATGATACTTTCAAGAGTGCTG

Coding sequence (CDS)

GCAACAGAAGAAGCTTTAGAGTGTTCTTTTCGCTCTTTTGAAATTGCTCATGCAACTATGATGGAAGCAACTGCAGGTGAAGTAATAAAGTCACACATGCCTAAAGTTACGACAAAAAGGATGATGAGAAGTGGAGGATATGGTTTGAATCAAAGCTTGGAAACACTTCTAAATACACCAAGCAATGAAGGGAGATTTGGTTTGGGTTATATGCCAAACGTATATGATAAAATTAGGCTTCAAAAAGAAAAGAAGAAAAGGTGTTTGGAAAAGCAAGGGATGATGGTGTTTGATCCAAGTCTAAAATTTATACCAGCATTATATGATACTTTCAAGAGTGCTG

Protein sequence

ATEEALECSFRSFEIAHATMMEATAGEVIKSHMPKVTTKRMMRSGGYGLNQSLETLLNTPSNEGRFGLGYMPNVYDKIRLQKEKKKRCLEKQGMMVFDPSLKFIPALYDTFKSAX
Homology
[Close]
BLAST of CsaV3_1G030720 vs. NCBI nr
Match: XP_016903535.1 (PREDICTED: uncharacterized protein LOC103504025 [Cucumis melo])

HSP 1 Score: 92.4 bits (228), Expect = 1.1e-15
Identity = 43/61 (70.49%), Postives = 50/61 (81.97%), Query Frame = 0 

Query: 54  ETLLNTPSNEGRFGLGYMPNVYDKIRLQKEKKKRCLEKQGMMVFDPSLKFIPALYDTFKS 113
           +TLL TPSN+GRFGLGY P++YDKIRLQ+EKKK+ L K  M  FDPS+K IP LYD FKS
Sbjct: 595 KTLLKTPSNDGRFGLGYKPSIYDKIRLQEEKKKKRLAKLEMREFDPSIKLIPELYDIFKS 654

Query: 114 A 115
           A
Sbjct: 655 A 655

[Close]
BLAST of CsaV3_1G030720 vs. NCBI nr
Match: KYP36696.1 (hypothetical protein KK1_042162 [Cajanus cajan])

HSP 1 Score: 66.6 bits (161), Expect = 6.2e-08
Identity = 46/121 (38.02%), Postives = 66/121 (54.55%), Query Frame = 0 

Query: 1   ATEEALECSFRSFEIAHATMMEATAGEVIKSHMPKVTTKRMMRSG---GYGLNQSLE--- 60
           ATEEALE SF+S EI     +E+  G    S    +  K MM  G   G GL + LE   
Sbjct: 355 ATEEALETSFQSLEIISTAYVESPMGSPQSSSASMMVAKVMMNGGYQPGLGLGKCLEGVT 414

Query: 61  TLLNTPSNEGRFGLGYMPNVYDKIRLQKEKKKRCLEKQGMMVFDPSLKFIPA--LYDTFK 114
            L++ P N+ R+GLGY P   DK R+ +E K++ L +  +   +P ++ IP   LY +F+
Sbjct: 415 KLIDLPENKNRWGLGYKPTQADKRRMAEENKEKRLAR--LENREPKVQKIPICHLYQSFR 473

[Close]
BLAST of CsaV3_1G030720 vs. NCBI nr
Match: XP_020205364.1 (uncharacterized protein LOC109790590, partial [Cajanus cajan])

HSP 1 Score: 66.6 bits (161), Expect = 6.2e-08
Identity = 46/121 (38.02%), Postives = 66/121 (54.55%), Query Frame = 0 

Query: 1   ATEEALECSFRSFEIAHATMMEATAGEVIKSHMPKVTTKRMMRSG---GYGLNQSLE--- 60
           ATEEALE SF+S EI     +E+  G    S    +  K MM  G   G GL + LE   
Sbjct: 719 ATEEALETSFQSLEIISTAYVESPMGSPQSSSASMMVAKVMMNGGYQPGLGLGKCLEGVT 778

Query: 61  TLLNTPSNEGRFGLGYMPNVYDKIRLQKEKKKRCLEKQGMMVFDPSLKFIPA--LYDTFK 114
            L++ P N+ R+GLGY P   DK R+ +E K++ L +  +   +P ++ IP   LY +F+
Sbjct: 779 KLIDLPENKNRWGLGYKPTQADKRRMAEENKEKRLAR--LENREPKVQKIPICHLYQSFR 837

[Close]
BLAST of CsaV3_1G030720 vs. NCBI nr
Match: XP_017978308.1 (PREDICTED: uncharacterized protein LOC108662447 [Theobroma cacao])

HSP 1 Score: 62.4 bits (150), Expect = 1.2e-06
Identity = 48/125 (38.40%), Postives = 67/125 (53.60%), Query Frame = 0 

Query: 1   ATEEALECSFRSFEIAHATMMEATAGEVIKSHMPKVTTKRMMRS-------GGYGLNQSL 60
           ATEE  ECSFRSFE  +AT +     +VI +    V TK  ++         G GL ++L
Sbjct: 344 ATEEVPECSFRSFEFVNATYVGER--KVIPTPRLSVATKMGVKQTAGKGCRAGLGLGKNL 403

Query: 61  ETL---LNTPSNEGRFGLGYMPNVYDKIRLQKEKK-KRCLEKQGMMVFDPSLKFIPALYD 115
           + +   L    NE +FGLGY P   +K +L  +KK KR  + +G    D   + IP LY+
Sbjct: 404 QGINRPLTPIKNEEKFGLGYKPTKEEKRKLTAQKKIKRMAQLEGKEE-DFEERTIPHLYE 463

[Close]
BLAST of CsaV3_1G030720 vs. NCBI nr
Match: OMO97258.1 (hypothetical protein CCACVL1_04620 [Corchorus capsularis])

HSP 1 Score: 62.4 bits (150), Expect = 1.2e-06
Identity = 41/114 (35.96%), Postives = 59/114 (51.75%), Query Frame = 0 

Query: 3   EEALECSFRSFEIAHATMMEATAGEVIKSHMPKVTTKRMMRSG-GYGLN-QSLETLLNTP 62
           E + ECSFR+FE+A    M      V+     +   KR    G G G++ Q +   +  P
Sbjct: 402 EGSYECSFRAFEVAETIPMSMIDHSVMSI---RFLMKRGFEEGKGLGMDLQGITKAVEVP 461

Query: 63  SNEGRFGLGYMPNVYDKIRLQKEKKKRCLEKQGMMVFDPSLKFIPALYDTFKSA 115
           ++EG FGLG+ P   D    ++  K R L + G  V +  +KF P LY+TFKSA
Sbjct: 462 THEGPFGLGFKPTAKDWAEAEERMKLRRLVRMGHRVEEKKMKF-PPLYETFKSA 511

[Close]
BLAST of CsaV3_1G030720 vs. TrEMBL
Match: tr|A0A1S4E6E2|A0A1S4E6E2_CUCME (uncharacterized protein LOC103504025 OS=Cucumis melo OX=3656 GN=LOC103504025 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 7.0e-16
Identity = 43/61 (70.49%), Postives = 50/61 (81.97%), Query Frame = 0 

Query: 54  ETLLNTPSNEGRFGLGYMPNVYDKIRLQKEKKKRCLEKQGMMVFDPSLKFIPALYDTFKS 113
           +TLL TPSN+GRFGLGY P++YDKIRLQ+EKKK+ L K  M  FDPS+K IP LYD FKS
Sbjct: 595 KTLLKTPSNDGRFGLGYKPSIYDKIRLQEEKKKKRLAKLEMREFDPSIKLIPELYDIFKS 654

Query: 114 A 115
           A
Sbjct: 655 A 655

[Close]
BLAST of CsaV3_1G030720 vs. TrEMBL
Match: tr|A0A151R2D5|A0A151R2D5_CAJCA (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_042162 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 4.1e-08
Identity = 46/121 (38.02%), Postives = 66/121 (54.55%), Query Frame = 0 

Query: 1   ATEEALECSFRSFEIAHATMMEATAGEVIKSHMPKVTTKRMMRSG---GYGLNQSLE--- 60
           ATEEALE SF+S EI     +E+  G    S    +  K MM  G   G GL + LE   
Sbjct: 355 ATEEALETSFQSLEIISTAYVESPMGSPQSSSASMMVAKVMMNGGYQPGLGLGKCLEGVT 414

Query: 61  TLLNTPSNEGRFGLGYMPNVYDKIRLQKEKKKRCLEKQGMMVFDPSLKFIPA--LYDTFK 114
            L++ P N+ R+GLGY P   DK R+ +E K++ L +  +   +P ++ IP   LY +F+
Sbjct: 415 KLIDLPENKNRWGLGYKPTQADKRRMAEENKEKRLAR--LENREPKVQKIPICHLYQSFR 473

[Close]
BLAST of CsaV3_1G030720 vs. TrEMBL
Match: tr|A0A1R3JQX3|A0A1R3JQX3_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_04620 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 7.7e-07
Identity = 41/114 (35.96%), Postives = 59/114 (51.75%), Query Frame = 0 

Query: 3   EEALECSFRSFEIAHATMMEATAGEVIKSHMPKVTTKRMMRSG-GYGLN-QSLETLLNTP 62
           E + ECSFR+FE+A    M      V+     +   KR    G G G++ Q +   +  P
Sbjct: 402 EGSYECSFRAFEVAETIPMSMIDHSVMSI---RFLMKRGFEEGKGLGMDLQGITKAVEVP 461

Query: 63  SNEGRFGLGYMPNVYDKIRLQKEKKKRCLEKQGMMVFDPSLKFIPALYDTFKSA 115
           ++EG FGLG+ P   D    ++  K R L + G  V +  +KF P LY+TFKSA
Sbjct: 462 THEGPFGLGFKPTAKDWAEAEERMKLRRLVRMGHRVEEKKMKF-PPLYETFKSA 511

[Close]
BLAST of CsaV3_1G030720 vs. TrEMBL
Match: tr|A0A061ESA1|A0A061ESA1_THECC (Gag-pro-like protein OS=Theobroma cacao OX=3641 GN=TCM_022266 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.7e-06
Identity = 47/125 (37.60%), Postives = 67/125 (53.60%), Query Frame = 0 

Query: 1   ATEEALECSFRSFEIAHATMMEATAGEVIKSHMPKVTTKRMMRS-------GGYGLNQSL 60
           ATEE  ECSFRSFE  +AT +     +VI +    V TK  ++         G GL ++L
Sbjct: 770 ATEEVPECSFRSFEFVNATYIGEK--KVIPTPRLSVATKMGVKQTVGKGCRAGLGLGKNL 829

Query: 61  ETL---LNTPSNEGRFGLGYMPNVYDKIRLQKEKK-KRCLEKQGMMVFDPSLKFIPALYD 115
           + +   L    NE RFGLGY P   ++ +L  +KK KR  + +G    +   + IP LY+
Sbjct: 830 QGINRPLTPMKNEERFGLGYKPTKEERRKLTAQKKIKRMAQLEGKEE-EFGERTIPHLYE 889

[Close]
BLAST of CsaV3_1G030720 vs. TrEMBL
Match: tr|A0A061EXR3|A0A061EXR3_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_024883 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.2e-06
Identity = 47/125 (37.60%), Postives = 67/125 (53.60%), Query Frame = 0 

Query: 1    ATEEALECSFRSFEIAHATMMEATAGEVIKSHMPKVTTKRMMRSG-------GYGLNQSL 60
            ATEE  ECSFRSFE  +AT +     +VI +    V TK  ++         G GL ++L
Sbjct: 1619 ATEEVPECSFRSFEFVNATYVGER--KVIPTPRLSVATKMGVKQTVGKGCRVGLGLGKNL 1678

Query: 61   ETL---LNTPSNEGRFGLGYMPNVYDKIRLQKEKK-KRCLEKQGMMVFDPSLKFIPALYD 115
            + +   L    NE RFGLGY P   ++ +L  +KK KR  + +G    +   + IP LY+
Sbjct: 1679 QGINRPLTPMKNEERFGLGYKPTKEERRKLTAQKKIKRMAQLEGKKE-EFGERTIPHLYE 1738

The following BLAST results are available for this feature:
BLAST of CsaV3_1G030720 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016903535.11.1e-1570.49PREDICTED: uncharacterized protein LOC103504025 [Cucumis melo][more]
KYP36696.16.2e-0838.02hypothetical protein KK1_042162 [Cajanus cajan][more]
XP_020205364.16.2e-0838.02uncharacterized protein LOC109790590, partial [Cajanus cajan][more]
XP_017978308.11.2e-0638.40PREDICTED: uncharacterized protein LOC108662447 [Theobroma cacao][more]
OMO97258.11.2e-0635.96hypothetical protein CCACVL1_04620 [Corchorus capsularis][more]
BLAST of CsaV3_1G030720 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G030720 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G030720 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4E6E2|A0A1S4E6E2_CUCME7.0e-1670.49uncharacterized protein LOC103504025 OS=Cucumis melo OX=3656 GN=LOC103504025 PE=... [more]
tr|A0A151R2D5|A0A151R2D5_CAJCA4.1e-0838.02Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_042162 PE=4 SV=1[more]
tr|A0A1R3JQX3|A0A1R3JQX3_COCAP7.7e-0735.96Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_04620 PE=4 ... [more]
tr|A0A061ESA1|A0A061ESA1_THECC1.7e-0637.60Gag-pro-like protein OS=Theobroma cacao OX=3641 GN=TCM_022266 PE=4 SV=1[more]
tr|A0A061EXR3|A0A061EXR3_THECC2.2e-0637.60Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_024883 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G030720.1CsaV3_1G030720.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G030720Cucumber (Chinese Long) v3cuccucB009
CsaV3_1G030720Silver-seed gourdcarcucB0039
CsaV3_1G030720Silver-seed gourdcarcucB0040
CsaV3_1G030720Silver-seed gourdcarcucB0144
CsaV3_1G030720Silver-seed gourdcarcucB0603
CsaV3_1G030720Cucumber (Gy14) v2cgybcucB001
CsaV3_1G030720Cucumber (Gy14) v2cgybcucB059
CsaV3_1G030720Cucumber (Gy14) v1cgycucB353
CsaV3_1G030720Cucurbita maxima (Rimu)cmacucB0073
CsaV3_1G030720Cucurbita maxima (Rimu)cmacucB0110
CsaV3_1G030720Cucurbita maxima (Rimu)cmacucB0116
CsaV3_1G030720Cucurbita moschata (Rifu)cmocucB0060
CsaV3_1G030720Cucurbita moschata (Rifu)cmocucB0104
CsaV3_1G030720Cucurbita pepo (Zucchini)cpecucB0105
CsaV3_1G030720Cucurbita pepo (Zucchini)cpecucB0434
CsaV3_1G030720Cucurbita pepo (Zucchini)cpecucB0800
CsaV3_1G030720Wild cucumber (PI 183967)cpicucB000
CsaV3_1G030720Wild cucumber (PI 183967)cpicucB073
CsaV3_1G030720Bottle gourd (USVL1VR-Ls)cuclsiB010
CsaV3_1G030720Bottle gourd (USVL1VR-Ls)cuclsiB072
CsaV3_1G030720Melon (DHL92) v3.5.1cucmeB058
CsaV3_1G030720Melon (DHL92) v3.5.1cucmeB082
CsaV3_1G030720Melon (DHL92) v3.6.1cucmedB055
CsaV3_1G030720Melon (DHL92) v3.6.1cucmedB076
CsaV3_1G030720Watermelon (Charleston Gray)cucwcgB009
CsaV3_1G030720Watermelon (Charleston Gray)cucwcgB078
CsaV3_1G030720Watermelon (97103) v1cucwmB090
CsaV3_1G030720Watermelon (97103) v1cucwmB095
CsaV3_1G030720Watermelon (97103) v2cucwmbB067
CsaV3_1G030720Wax gourdcucwgoB108