CsaV3_1G030680 (gene) Cucumber (Chinese Long) v3

NameCsaV3_1G030680
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionTransposase, Ptta/En/Spm
Locationchr1 : 17651536 .. 17652226 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATCCTTGCATTAACGAAGGAGAGCGGGAAGAATTTGTTAGATCTAGAGTATGTCCACATTTTGAGGTATCAATGAACTTATAGATTTTTAGGTTTTAAATATTTGTTAAGAAACTTTATAAAACCCCAATACAATGTTATATTTGTGTAGGACAAAAGAAAAGTTCAACAAGAGAGAAGGAAGAAGAATAAGTATAACCATAAGCTTTCAAGAAAAGGTTATGCTAATCTTCGAGAGGAATTGGTAAGAAGTAGTTTATGTTTGAATTAGTCTGAAAAGCTTCTTAATCAATCTAATATAATGCATTGTATATATTGAAATGTAGAAAAATAACCCTTCAGAAGAAGGTGATCTTGATCGAGCTAGCATGTGGAAGAAGGCTCGTGTAGATAAGAAGAGAGAATATGACAATGAACACGTTCAAGAAATTATGAATTGTATAGTAAGATACATATTACAATTTTACATTCTTTAAAGTTTTTAAGTTTTATGAAATTAAGCTACATTTTTTTACATTTTTAGGATGAGATCTCAAAGACATATGTTGACAAAGAGCCATCTCCAAACGATGTTTTGACACAAGCTTTGGGTACAAAAGAGCTTAGTGGACTTTTACATGGAGTTGCCAGGTTTTTCACCCCAACTACTTACTTCCAATACAACAAAACACTCAAAGAAACGAAGTGA

mRNA sequence

ATGTATCCTTGCATTAACGAAGGAGAGCGGGAAGAATTTGTTAGATCTAGAGTATGTCCACATTTTGAGGACAAAAGAAAAGTTCAACAAGAGAGAAGGAAGAAGAATAAGTATAACCATAAGCTTTCAAGAAAAGGTTATGCTAATCTTCGAGAGGAATTGAAAAATAACCCTTCAGAAGAAGGTGATCTTGATCGAGCTAGCATGTGGAAGAAGGCTCGTGTAGATAAGAAGAGAGAATATGACAATGAACACGTTCAAGAAATTATGAATTGTATAGATGAGATCTCAAAGACATATGTTGACAAAGAGCCATCTCCAAACGATGTTTTGACACAAGCTTTGGGTACAAAAGAGCTTAGTGGACTTTTACATGGAGTTGCCAGGTTTTTCACCCCAACTACTTACTTCCAATACAACAAAACACTCAAAGAAACGAAGTGA

Coding sequence (CDS)

ATGTATCCTTGCATTAACGAAGGAGAGCGGGAAGAATTTGTTAGATCTAGAGTATGTCCACATTTTGAGGACAAAAGAAAAGTTCAACAAGAGAGAAGGAAGAAGAATAAGTATAACCATAAGCTTTCAAGAAAAGGTTATGCTAATCTTCGAGAGGAATTGAAAAATAACCCTTCAGAAGAAGGTGATCTTGATCGAGCTAGCATGTGGAAGAAGGCTCGTGTAGATAAGAAGAGAGAATATGACAATGAACACGTTCAAGAAATTATGAATTGTATAGATGAGATCTCAAAGACATATGTTGACAAAGAGCCATCTCCAAACGATGTTTTGACACAAGCTTTGGGTACAAAAGAGCTTAGTGGACTTTTACATGGAGTTGCCAGGTTTTTCACCCCAACTACTTACTTCCAATACAACAAAACACTCAAAGAAACGAAGTGA

Protein sequence

MYPCINEGEREEFVRSRVCPHFEDKRKVQQERRKKNKYNHKLSRKGYANLREELKNNPSEEGDLDRASMWKKARVDKKREYDNEHVQEIMNCIDEISKTYVDKEPSPNDVLTQALGTKELSGLLHGVARFFTPTTYFQYNKTLKETK
BLAST of CsaV3_1G030680 vs. NCBI nr
Match: PRQ37373.1 (putative transposase, Ptta/En/Spm, plant [Rosa chinensis])

HSP 1 Score: 107.5 bits (267), Expect = 4.1e-20
Identity = 66/148 (44.59%), Postives = 86/148 (58.11%), Query Frame = 0

Query: 2   YPCINEGEREEFVRSRVCPHFEDKRKVQQERRKKNKYNHKLSRKGYANLREELKNNPSEE 61
           YP IN     EFV+SR    F +KRK QQERRK+NKY H+LSRKGYA L EEL N   +E
Sbjct: 182 YPFINADHWTEFVKSRTTLSFLEKRKAQQERRKQNKYPHRLSRKGYAGLEEELANEIDDE 241

Query: 62  GDLDRASMWKKARVDKKREYDNEHVQEIMNCIDEISKTYVDKEPS---PNDVLTQALGTK 121
            ++DRA++W K R  K   + +E  ++    ID + K     E S    +D+LT ALGT 
Sbjct: 242 -EIDRATLWIKGRQSKNGNFKDEETKKTAEKIDALKKRVATGELSIEGSDDILTLALGTP 301

Query: 122 ELSGLLHGVARFFTPTTYFQYNKTLKET 147
           E  G + GV     P+TYF   K  K++
Sbjct: 302 EHGGRVRGVGGQMNPSTYFNLPKRRKQS 328

BLAST of CsaV3_1G030680 vs. NCBI nr
Match: XP_011648488.1 (PREDICTED: uncharacterized protein LOC105434490 [Cucumis sativus])

HSP 1 Score: 101.7 bits (252), Expect = 2.2e-18
Identity = 52/60 (86.67%), Postives = 52/60 (86.67%), Query Frame = 0

Query: 69  MWKKARVDKKREYDNEHVQEIMNCIDEISKTYVDKEPSPNDVLTQALGTKELSGLLHGVA 128
           MWKKARVDKKREYDNEH        DEISKTYVDKEPSPNDVLTQALGTKELSGLLHGVA
Sbjct: 1   MWKKARVDKKREYDNEH--------DEISKTYVDKEPSPNDVLTQALGTKELSGLLHGVA 52

BLAST of CsaV3_1G030680 vs. NCBI nr
Match: XP_024047605.1 (uncharacterized protein LOC18052269 isoform X2 [Citrus clementina] >XP_024047606.1 uncharacterized protein LOC18052269 isoform X2 [Citrus clementina] >XP_024047607.1 uncharacterized protein LOC18052269 isoform X2 [Citrus clementina] >XP_024047608.1 uncharacterized protein LOC18052269 isoform X2 [Citrus clementina] >XP_024047609.1 uncharacterized protein LOC18052269 isoform X2 [Citrus clementina] >XP_024047610.1 uncharacterized protein LOC18052269 isoform X2 [Citrus clementina] >XP_024047611.1 uncharacterized protein LOC18052269 isoform X2 [Citrus clementina] >XP_024047612.1 uncharacterized protein LOC18052269 isoform X2 [Citrus clementina] >XP_024047613.1 uncharacterized protein LOC18052269 isoform X2 [Citrus clementina] >XP_024047614.1 uncharacterized protein LOC18052269 isoform X2 [Citrus clementina] >XP_024047615.1 uncharacterized protein LOC18052269 isoform X2 [Citrus clementina])

HSP 1 Score: 98.2 bits (243), Expect = 2.5e-17
Identity = 64/144 (44.44%), Postives = 84/144 (58.33%), Query Frame = 0

Query: 1   MYPCINEGEREEFVRSRVCPHFEDKRKVQQERRKKNKYNHKLSRKGYANLREELKNNPSE 60
           MY  I + + E FVR R    FE+  +  +ERR KN YNH LSRKGY  L+EEL+     
Sbjct: 131 MYDFIEQEDWEVFVRYRTSSAFEEISQKYRERRAKNIYNHCLSRKGYVGLKEELQQAAGN 190

Query: 61  EGDLDRASMWKKARVDKKREYDNEHVQEIMNCIDEISKTY---VDKEPSPNDVLTQALGT 120
             ++ R+++WK AR +KK  Y +E V+E  + IDEI+K     V      NDVLT ALGT
Sbjct: 191 NEEISRSTLWKAARKNKKGRYTSEVVREKADEIDEITKKSEEGVIATGGRNDVLTIALGT 250

Query: 121 KELSGLLHGVARFFTPTTYFQYNK 142
            E SG +    RF TP++YF   K
Sbjct: 251 PESSGRVRTGGRFATPSSYFGRKK 274

BLAST of CsaV3_1G030680 vs. NCBI nr
Match: XP_024047616.1 (uncharacterized protein LOC18052269 isoform X3 [Citrus clementina])

HSP 1 Score: 98.2 bits (243), Expect = 2.5e-17
Identity = 64/144 (44.44%), Postives = 84/144 (58.33%), Query Frame = 0

Query: 1   MYPCINEGEREEFVRSRVCPHFEDKRKVQQERRKKNKYNHKLSRKGYANLREELKNNPSE 60
           MY  I + + E FVR R    FE+  +  +ERR KN YNH LSRKGY  L+EEL+     
Sbjct: 131 MYDFIEQEDWEVFVRYRTSSAFEEISQKYRERRAKNIYNHCLSRKGYVGLKEELQQAAGN 190

Query: 61  EGDLDRASMWKKARVDKKREYDNEHVQEIMNCIDEISKTY---VDKEPSPNDVLTQALGT 120
             ++ R+++WK AR +KK  Y +E V+E  + IDEI+K     V      NDVLT ALGT
Sbjct: 191 NEEISRSTLWKAARKNKKGRYTSEVVREKADEIDEITKKSEEGVIATGGRNDVLTIALGT 250

Query: 121 KELSGLLHGVARFFTPTTYFQYNK 142
            E SG +    RF TP++YF   K
Sbjct: 251 PESSGRVRTGGRFATPSSYFGRKK 274

BLAST of CsaV3_1G030680 vs. NCBI nr
Match: PIA35548.1 (hypothetical protein AQUCO_03500122v1 [Aquilegia coerulea])

HSP 1 Score: 97.8 bits (242), Expect = 3.2e-17
Identity = 63/144 (43.75%), Postives = 82/144 (56.94%), Query Frame = 0

Query: 2   YPCINEGEREEFVRSRVCPHFEDKRKVQQERRKKNKYNHKLSRKGYANLREELKNNPSEE 61
           Y  I +   + FV+SR+   F+ K K+Q ERR KN YNH+L RKGY  L EELK +    
Sbjct: 298 YKFITQEHWDIFVKSRLSEDFQAKSKLQSERRAKNIYNHRLGRKGYVGLVEELKQSLGTS 357

Query: 62  GD-LDRASMWKKARVDKKREYDNEHVQEIMNCIDEISKTYVDKE---PSPNDVLTQALGT 121
            D LDR  +WKKAR +KK  Y ++ V+E    IDE++K   D        +D+LT ALGT
Sbjct: 358 VDKLDRCDLWKKARQNKKGLYLDDAVREKAELIDELTKQKKDGNLVIQVNDDILTLALGT 417

Query: 122 KELSGLLHGVARFFTPTTYFQYNK 142
            E SG +     F TP  YF + K
Sbjct: 418 PEHSGRVRAAGPFITPAAYFNHPK 441

BLAST of CsaV3_1G030680 vs. TrEMBL
Match: tr|A0A2P6QT63|A0A2P6QT63_ROSCH (Putative transposase, Ptta/En/Spm, plant OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0401831 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.7e-20
Identity = 66/148 (44.59%), Postives = 86/148 (58.11%), Query Frame = 0

Query: 2   YPCINEGEREEFVRSRVCPHFEDKRKVQQERRKKNKYNHKLSRKGYANLREELKNNPSEE 61
           YP IN     EFV+SR    F +KRK QQERRK+NKY H+LSRKGYA L EEL N   +E
Sbjct: 182 YPFINADHWTEFVKSRTTLSFLEKRKAQQERRKQNKYPHRLSRKGYAGLEEELANEIDDE 241

Query: 62  GDLDRASMWKKARVDKKREYDNEHVQEIMNCIDEISKTYVDKEPS---PNDVLTQALGTK 121
            ++DRA++W K R  K   + +E  ++    ID + K     E S    +D+LT ALGT 
Sbjct: 242 -EIDRATLWIKGRQSKNGNFKDEETKKTAEKIDALKKRVATGELSIEGSDDILTLALGTP 301

Query: 122 ELSGLLHGVARFFTPTTYFQYNKTLKET 147
           E  G + GV     P+TYF   K  K++
Sbjct: 302 EHGGRVRGVGGQMNPSTYFNLPKRRKQS 328

BLAST of CsaV3_1G030680 vs. TrEMBL
Match: tr|A0A2G5CX95|A0A2G5CX95_AQUCA (Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_03500122v1 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.1e-17
Identity = 63/144 (43.75%), Postives = 82/144 (56.94%), Query Frame = 0

Query: 2   YPCINEGEREEFVRSRVCPHFEDKRKVQQERRKKNKYNHKLSRKGYANLREELKNNPSEE 61
           Y  I +   + FV+SR+   F+ K K+Q ERR KN YNH+L RKGY  L EELK +    
Sbjct: 298 YKFITQEHWDIFVKSRLSEDFQAKSKLQSERRAKNIYNHRLGRKGYVGLVEELKQSLGTS 357

Query: 62  GD-LDRASMWKKARVDKKREYDNEHVQEIMNCIDEISKTYVDKE---PSPNDVLTQALGT 121
            D LDR  +WKKAR +KK  Y ++ V+E    IDE++K   D        +D+LT ALGT
Sbjct: 358 VDKLDRCDLWKKARQNKKGLYLDDAVREKAELIDELTKQKKDGNLVIQVNDDILTLALGT 417

Query: 122 KELSGLLHGVARFFTPTTYFQYNK 142
            E SG +     F TP  YF + K
Sbjct: 418 PEHSGRVRAAGPFITPAAYFNHPK 441

BLAST of CsaV3_1G030680 vs. TrEMBL
Match: tr|A0A2G5CW99|A0A2G5CW99_AQUCA (Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_03500122v1 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.1e-17
Identity = 63/144 (43.75%), Postives = 82/144 (56.94%), Query Frame = 0

Query: 2   YPCINEGEREEFVRSRVCPHFEDKRKVQQERRKKNKYNHKLSRKGYANLREELKNNPSEE 61
           Y  I +   + FV+SR+   F+ K K+Q ERR KN YNH+L RKGY  L EELK +    
Sbjct: 298 YKFITQEHWDIFVKSRLSEDFQAKSKLQSERRAKNIYNHRLGRKGYVGLVEELKQSLGTS 357

Query: 62  GD-LDRASMWKKARVDKKREYDNEHVQEIMNCIDEISKTYVDKE---PSPNDVLTQALGT 121
            D LDR  +WKKAR +KK  Y ++ V+E    IDE++K   D        +D+LT ALGT
Sbjct: 358 VDKLDRCDLWKKARQNKKGLYLDDAVREKAELIDELTKQKKDGNLVIQVNDDILTLALGT 417

Query: 122 KELSGLLHGVARFFTPTTYFQYNK 142
            E SG +     F TP  YF + K
Sbjct: 418 PEHSGRVRAAGPFITPAAYFNHPK 441

BLAST of CsaV3_1G030680 vs. TrEMBL
Match: tr|A0A2G5CW92|A0A2G5CW92_AQUCA (Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_03500122v1 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.1e-17
Identity = 63/144 (43.75%), Postives = 82/144 (56.94%), Query Frame = 0

Query: 2   YPCINEGEREEFVRSRVCPHFEDKRKVQQERRKKNKYNHKLSRKGYANLREELKNNPSEE 61
           Y  I +   + FV+SR+   F+ K K+Q ERR KN YNH+L RKGY  L EELK +    
Sbjct: 75  YKFITQEHWDIFVKSRLSEDFQAKSKLQSERRAKNIYNHRLGRKGYVGLVEELKQSLGTS 134

Query: 62  GD-LDRASMWKKARVDKKREYDNEHVQEIMNCIDEISKTYVDKE---PSPNDVLTQALGT 121
            D LDR  +WKKAR +KK  Y ++ V+E    IDE++K   D        +D+LT ALGT
Sbjct: 135 VDKLDRCDLWKKARQNKKGLYLDDAVREKAELIDELTKQKKDGNLVIQVNDDILTLALGT 194

Query: 122 KELSGLLHGVARFFTPTTYFQYNK 142
            E SG +     F TP  YF + K
Sbjct: 195 PEHSGRVRAAGPFITPAAYFNHPK 218

BLAST of CsaV3_1G030680 vs. TrEMBL
Match: tr|A0A2G5CW86|A0A2G5CW86_AQUCA (Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_03500122v1 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.1e-17
Identity = 63/144 (43.75%), Postives = 82/144 (56.94%), Query Frame = 0

Query: 2   YPCINEGEREEFVRSRVCPHFEDKRKVQQERRKKNKYNHKLSRKGYANLREELKNNPSEE 61
           Y  I +   + FV+SR+   F+ K K+Q ERR KN YNH+L RKGY  L EELK +    
Sbjct: 298 YKFITQEHWDIFVKSRLSEDFQAKSKLQSERRAKNIYNHRLGRKGYVGLVEELKQSLGTS 357

Query: 62  GD-LDRASMWKKARVDKKREYDNEHVQEIMNCIDEISKTYVDKE---PSPNDVLTQALGT 121
            D LDR  +WKKAR +KK  Y ++ V+E    IDE++K   D        +D+LT ALGT
Sbjct: 358 VDKLDRCDLWKKARQNKKGLYLDDAVREKAELIDELTKQKKDGNLVIQVNDDILTLALGT 417

Query: 122 KELSGLLHGVARFFTPTTYFQYNK 142
            E SG +     F TP  YF + K
Sbjct: 418 PEHSGRVRAAGPFITPAAYFNHPK 441

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PRQ37373.14.1e-2044.59putative transposase, Ptta/En/Spm, plant [Rosa chinensis][more]
XP_011648488.12.2e-1886.67PREDICTED: uncharacterized protein LOC105434490 [Cucumis sativus][more]
XP_024047605.12.5e-1744.44uncharacterized protein LOC18052269 isoform X2 [Citrus clementina] >XP_024047606... [more]
XP_024047616.12.5e-1744.44uncharacterized protein LOC18052269 isoform X3 [Citrus clementina][more]
PIA35548.13.2e-1743.75hypothetical protein AQUCO_03500122v1 [Aquilegia coerulea][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A2P6QT63|A0A2P6QT63_ROSCH2.7e-2044.59Putative transposase, Ptta/En/Spm, plant OS=Rosa chinensis OX=74649 GN=RchiOBHm_... [more]
tr|A0A2G5CX95|A0A2G5CX95_AQUCA2.1e-1743.75Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_03500122v1 PE=4... [more]
tr|A0A2G5CW99|A0A2G5CW99_AQUCA2.1e-1743.75Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_03500122v1 PE=4... [more]
tr|A0A2G5CW92|A0A2G5CW92_AQUCA2.1e-1743.75Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_03500122v1 PE=4... [more]
tr|A0A2G5CW86|A0A2G5CW86_AQUCA2.1e-1743.75Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_03500122v1 PE=4... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004252Probable_transposase_24
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G030680.1CsaV3_1G030680.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004252Probable transposase, Ptta/En/Spm, plantPFAMPF03004Transposase_24coord: 19..96
e-value: 1.2E-5
score: 25.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..46
NoneNo IPR availablePANTHERPTHR33018FAMILY NOT NAMEDcoord: 2..130

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G030680Cucsa.235670Cucumber (Gy14) v1cgycucB353
The following gene(s) are paralogous to this gene:

None