CsaV3_1G030680 (gene) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTATCCTTGCATTAACGAAGGAGAGCGGGAAGAATTTGTTAGATCTAGAGTATGTCCACATTTTGAGGTATCAATGAACTTATAGATTTTTAGGTTTTAAATATTTGTTAAGAAACTTTATAAAACCCCAATACAATGTTATATTTGTGTAGGACAAAAGAAAAGTTCAACAAGAGAGAAGGAAGAAGAATAAGTATAACCATAAGCTTTCAAGAAAAGGTTATGCTAATCTTCGAGAGGAATTGGTAAGAAGTAGTTTATGTTTGAATTAGTCTGAAAAGCTTCTTAATCAATCTAATATAATGCATTGTATATATTGAAATGTAGAAAAATAACCCTTCAGAAGAAGGTGATCTTGATCGAGCTAGCATGTGGAAGAAGGCTCGTGTAGATAAGAAGAGAGAATATGACAATGAACACGTTCAAGAAATTATGAATTGTATAGTAAGATACATATTACAATTTTACATTCTTTAAAGTTTTTAAGTTTTATGAAATTAAGCTACATTTTTTTACATTTTTAGGATGAGATCTCAAAGACATATGTTGACAAAGAGCCATCTCCAAACGATGTTTTGACACAAGCTTTGGGTACAAAAGAGCTTAGTGGACTTTTACATGGAGTTGCCAGGTTTTTCACCCCAACTACTTACTTCCAATACAACAAAACACTCAAAGAAACGAAGTGA ATGTATCCTTGCATTAACGAAGGAGAGCGGGAAGAATTTGTTAGATCTAGAGTATGTCCACATTTTGAGGACAAAAGAAAAGTTCAACAAGAGAGAAGGAAGAAGAATAAGTATAACCATAAGCTTTCAAGAAAAGGTTATGCTAATCTTCGAGAGGAATTGAAAAATAACCCTTCAGAAGAAGGTGATCTTGATCGAGCTAGCATGTGGAAGAAGGCTCGTGTAGATAAGAAGAGAGAATATGACAATGAACACGTTCAAGAAATTATGAATTGTATAGATGAGATCTCAAAGACATATGTTGACAAAGAGCCATCTCCAAACGATGTTTTGACACAAGCTTTGGGTACAAAAGAGCTTAGTGGACTTTTACATGGAGTTGCCAGGTTTTTCACCCCAACTACTTACTTCCAATACAACAAAACACTCAAAGAAACGAAGTGA ATGTATCCTTGCATTAACGAAGGAGAGCGGGAAGAATTTGTTAGATCTAGAGTATGTCCACATTTTGAGGACAAAAGAAAAGTTCAACAAGAGAGAAGGAAGAAGAATAAGTATAACCATAAGCTTTCAAGAAAAGGTTATGCTAATCTTCGAGAGGAATTGAAAAATAACCCTTCAGAAGAAGGTGATCTTGATCGAGCTAGCATGTGGAAGAAGGCTCGTGTAGATAAGAAGAGAGAATATGACAATGAACACGTTCAAGAAATTATGAATTGTATAGATGAGATCTCAAAGACATATGTTGACAAAGAGCCATCTCCAAACGATGTTTTGACACAAGCTTTGGGTACAAAAGAGCTTAGTGGACTTTTACATGGAGTTGCCAGGTTTTTCACCCCAACTACTTACTTCCAATACAACAAAACACTCAAAGAAACGAAGTGA MYPCINEGEREEFVRSRVCPHFEDKRKVQQERRKKNKYNHKLSRKGYANLREELKNNPSEEGDLDRASMWKKARVDKKREYDNEHVQEIMNCIDEISKTYVDKEPSPNDVLTQALGTKELSGLLHGVARFFTPTTYFQYNKTLKETK
BLAST of CsaV3_1G030680 vs. NCBI nr
Match: PRQ37373.1 (putative transposase, Ptta/En/Spm, plant [Rosa chinensis]) HSP 1 Score: 107.5 bits (267), Expect = 4.1e-20 Identity = 66/148 (44.59%), Postives = 86/148 (58.11%), Query Frame = 0
BLAST of CsaV3_1G030680 vs. NCBI nr
Match: XP_011648488.1 (PREDICTED: uncharacterized protein LOC105434490 [Cucumis sativus]) HSP 1 Score: 101.7 bits (252), Expect = 2.2e-18 Identity = 52/60 (86.67%), Postives = 52/60 (86.67%), Query Frame = 0
BLAST of CsaV3_1G030680 vs. NCBI nr
Match: XP_024047605.1 (uncharacterized protein LOC18052269 isoform X2 [Citrus clementina] >XP_024047606.1 uncharacterized protein LOC18052269 isoform X2 [Citrus clementina] >XP_024047607.1 uncharacterized protein LOC18052269 isoform X2 [Citrus clementina] >XP_024047608.1 uncharacterized protein LOC18052269 isoform X2 [Citrus clementina] >XP_024047609.1 uncharacterized protein LOC18052269 isoform X2 [Citrus clementina] >XP_024047610.1 uncharacterized protein LOC18052269 isoform X2 [Citrus clementina] >XP_024047611.1 uncharacterized protein LOC18052269 isoform X2 [Citrus clementina] >XP_024047612.1 uncharacterized protein LOC18052269 isoform X2 [Citrus clementina] >XP_024047613.1 uncharacterized protein LOC18052269 isoform X2 [Citrus clementina] >XP_024047614.1 uncharacterized protein LOC18052269 isoform X2 [Citrus clementina] >XP_024047615.1 uncharacterized protein LOC18052269 isoform X2 [Citrus clementina]) HSP 1 Score: 98.2 bits (243), Expect = 2.5e-17 Identity = 64/144 (44.44%), Postives = 84/144 (58.33%), Query Frame = 0
BLAST of CsaV3_1G030680 vs. NCBI nr
Match: XP_024047616.1 (uncharacterized protein LOC18052269 isoform X3 [Citrus clementina]) HSP 1 Score: 98.2 bits (243), Expect = 2.5e-17 Identity = 64/144 (44.44%), Postives = 84/144 (58.33%), Query Frame = 0
BLAST of CsaV3_1G030680 vs. NCBI nr
Match: PIA35548.1 (hypothetical protein AQUCO_03500122v1 [Aquilegia coerulea]) HSP 1 Score: 97.8 bits (242), Expect = 3.2e-17 Identity = 63/144 (43.75%), Postives = 82/144 (56.94%), Query Frame = 0
BLAST of CsaV3_1G030680 vs. TrEMBL
Match: tr|A0A2P6QT63|A0A2P6QT63_ROSCH (Putative transposase, Ptta/En/Spm, plant OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0401831 PE=4 SV=1) HSP 1 Score: 107.5 bits (267), Expect = 2.7e-20 Identity = 66/148 (44.59%), Postives = 86/148 (58.11%), Query Frame = 0
BLAST of CsaV3_1G030680 vs. TrEMBL
Match: tr|A0A2G5CX95|A0A2G5CX95_AQUCA (Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_03500122v1 PE=4 SV=1) HSP 1 Score: 97.8 bits (242), Expect = 2.1e-17 Identity = 63/144 (43.75%), Postives = 82/144 (56.94%), Query Frame = 0
BLAST of CsaV3_1G030680 vs. TrEMBL
Match: tr|A0A2G5CW99|A0A2G5CW99_AQUCA (Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_03500122v1 PE=4 SV=1) HSP 1 Score: 97.8 bits (242), Expect = 2.1e-17 Identity = 63/144 (43.75%), Postives = 82/144 (56.94%), Query Frame = 0
BLAST of CsaV3_1G030680 vs. TrEMBL
Match: tr|A0A2G5CW92|A0A2G5CW92_AQUCA (Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_03500122v1 PE=4 SV=1) HSP 1 Score: 97.8 bits (242), Expect = 2.1e-17 Identity = 63/144 (43.75%), Postives = 82/144 (56.94%), Query Frame = 0
BLAST of CsaV3_1G030680 vs. TrEMBL
Match: tr|A0A2G5CW86|A0A2G5CW86_AQUCA (Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_03500122v1 PE=4 SV=1) HSP 1 Score: 97.8 bits (242), Expect = 2.1e-17 Identity = 63/144 (43.75%), Postives = 82/144 (56.94%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |