CsaV3_1G030650 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G030650
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr1 : 17588340 .. 17588573 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCTTTGTTGATGTCGACTGGGCATTGGATCCTGATGACAGACGCTCGACATCTAGAATATTTGTGTACTTTTATGGAAATTTAGTCACTTGGGGATCTAAAAAGAAGCACAGTGTGTCTATATCAAGTACTGAAGCAGCATTTTGCTGCCTTGCAAATGCAGCCATTGAACTTGTATGGTTAACCTCTCTTCAAAGAACTAAAGATCTTTCTACCGAAACCACCAATATTGTG

mRNA sequence

GCCTTTGTTGATGTCGACTGGGCATTGGATCCTGATGACAGACGCTCGACATCTAGAATATTTGTGTACTTTTATGGAAATTTAGTCACTTGGGGATCTAAAAAGAAGCACAGTGTGTCTATATCAAGTACTGAAGCAGCATTTTGCTGCCTTGCAAATGCAGCCATTGAACTTGTATGGTTAACCTCTCTTCAAAGAACTAAAGATCTTTCTACCGAAACCACCAATATTGTG

Coding sequence (CDS)

GCCTTTGTTGATGTCGACTGGGCATTGGATCCTGATGACAGACGCTCGACATCTAGAATATTTGTGTACTTTTATGGAAATTTAGTCACTTGGGGATCTAAAAAGAAGCACAGTGTGTCTATATCAAGTACTGAAGCAGCATTTTGCTGCCTTGCAAATGCAGCCATTGAACTTGTATGGTTAACCTCTCTTCAAAGAACTAAAGATCTTTCTACCGAAACCACCAATATTGTG

Protein sequence

AFVDVDWALDPDDRRSTSRIFVYFYGNLVTWGSKKKHSVSISSTEAAFCCLANAAIELVWLTSLQRTKDLSTETTNIV

Homology

[Close]

BLAST of CsaV3_1G030650 vs. NCBI nr
Match: XP_011648487.1 (PREDICTED: probable sulfate transporter 3.5 [Cucumis sativus])

HSP 1 Score: 160.6 bits (405), Expect = 2.1e-36
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1   AFVDVDWALDPDDRRSTSRIFVYFYGNLVTWGSKKKHSVSISSTEAAFCCLANAAIELVW 60
           AFVDVDWALDPDDRRSTSRIFVYFYGNLVTWGSKKKHSVSISSTEAAFCCLANAAIELVW
Sbjct: 47  AFVDVDWALDPDDRRSTSRIFVYFYGNLVTWGSKKKHSVSISSTEAAFCCLANAAIELVW 106

Query: 61  LTSLQRTKDLSTETTNIV 79
           LTSLQRTKDLSTETTNIV
Sbjct: 107 LTSLQRTKDLSTETTNIV 124

[Close]

BLAST of CsaV3_1G030650 vs. NCBI nr
Match: XP_022154958.1 (uncharacterized protein LOC111022102 [Momordica charantia])

HSP 1 Score: 90.1 bits (222), Expect = 3.5e-15
Identity = 44/70 (62.86%), Postives = 53/70 (75.71%), Query Frame = 0


Query: 2   FVDVDWALDPDDRRSTSRIFVYFYGNLVTWGSKKKHSVSISSTEAAFCCLANAAIELVWL 61
           F D DWA + DDR+STS   +YF GNLVTWGS K+H +S SSTEA FCC+ANAA +L+WL
Sbjct: 110 FADDDWASNLDDRKSTSSYCIYFGGNLVTWGSMKQHIISGSSTEAEFCCIANAATKLIWL 169

Query: 62  TSLQRTKDLS 72
            S  R K+LS
Sbjct: 170 HS--RLKELS 177

[Close]

BLAST of CsaV3_1G030650 vs. NCBI nr
Match: XP_016902754.1 (PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Cucumis melo])

HSP 1 Score: 84.3 bits (207), Expect = 1.9e-13
Identity = 40/63 (63.49%), Postives = 46/63 (73.02%), Query Frame = 0


Query: 2   FVDVDWALDPDDRRSTSRIFVYFYGNLVTWGSKKKHSVSISSTEAAFCCLANAAIELVWL 61
           F D DWA DPDDR+STS  +VYF  NLV+WGSKK   +S SSTEA + CLA  A ELVW+
Sbjct: 129 FADADWASDPDDRKSTSGFYVYFGNNLVSWGSKKHSIISRSSTEAEYRCLALLATELVWI 188

Query: 62  TSL 65
            SL
Sbjct: 189 RSL 191

[Close]

BLAST of CsaV3_1G030650 vs. NCBI nr
Match: XP_022135935.1 (uncharacterized protein LOC111007767 [Momordica charantia])

HSP 1 Score: 83.6 bits (205), Expect = 3.3e-13
Identity = 39/63 (61.90%), Postives = 47/63 (74.60%), Query Frame = 0


Query: 2   FVDVDWALDPDDRRSTSRIFVYFYGNLVTWGSKKKHSVSISSTEAAFCCLANAAIELVWL 61
           +VD  WA DPDDR+STS   V+F GNLVTWGSKK+  +S SS E  + CLA AA EL+WL
Sbjct: 40  YVDAGWASDPDDRKSTSGFCVFFGGNLVTWGSKKQSIISRSSMEVEYRCLATAATELIWL 99

Query: 62  TSL 65
           +SL
Sbjct: 100 SSL 102

[Close]

BLAST of CsaV3_1G030650 vs. NCBI nr
Match: KYP76690.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 82.8 bits (203), Expect = 5.7e-13
Identity = 39/77 (50.65%), Postives = 54/77 (70.13%), Query Frame = 0


Query: 1   AFVDVDWALDPDDRRSTSRIFVYFYGNLVTWGSKKKHSVSISSTEAAFCCLANAAIELVW 60
           AF D DWA DPDDRRSTSR  V+F  NLV+W SKK+  V+ SSTEA +  +A+A IE++W
Sbjct: 100 AFCDADWASDPDDRRSTSRFCVFFGPNLVSWSSKKQSLVARSSTEAEYRSMAHATIEIIW 159

Query: 61  LTSLQRTKDLSTETTNI 78
           + SL +   + ++T  +
Sbjct: 160 IQSLLKELGIVSDTPTL 176

[Close]

BLAST of CsaV3_1G030650 vs. TAIR10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein)

HSP 1 Score: 56.6 bits (135), Expect = 7.9e-09
Identity = 31/76 (40.79%), Postives = 44/76 (57.89%), Query Frame = 0


Query: 1   AFVDVDWALDPDDRRSTSRIFVYFYGNLVTWGSKKKHSVSISSTEAAFCCLANAAIELVW 60
           AF D DWA     RRST+    +   N+++W +K++ +VS SSTE  +  LA  A EL W
Sbjct: 166 AFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

Query: 61  LTSLQRTKDLSTETTN 77
            +S  R++D S   TN
Sbjct: 226 -SSASRSRDPSAMNTN 240

[Close]

BLAST of CsaV3_1G030650 vs. TAIR10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8)

HSP 1 Score: 44.7 bits (104), Expect = 3.1e-05
Identity = 25/69 (36.23%), Postives = 37/69 (53.62%), Query Frame = 0


Query: 2   FVDVDWALDPDDRRSTSRIFVYFYGNLVTWGSKKKHSVSISSTEAAFCCLANAAIELVWL 61
           F D  +    D RRST+   ++   +L++W SKK+  VS SS EA +  L+ A  E++WL
Sbjct: 445 FSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWL 504

Query: 62  TSLQRTKDL 71
               R   L
Sbjct: 505 AQFFRELQL 513

[Close]

BLAST of CsaV3_1G030650 vs. Swiss-Prot
Match: sp|Q9ZT94|POLR2_ARATH (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.1e-07
Identity = 29/64 (45.31%), Postives = 39/64 (60.94%), Query Frame = 0


Query: 1    AFVDVDWALDPDDRRSTSRIFVYFYGNLVTWGSKKKHSVSISSTEAAFCCLANAAIELVW 60
            A+ D DWA D DD  ST+   VY   + ++W SKK+  V  SSTEA +  +AN + EL W
Sbjct: 1294 AYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSELQW 1353

Query: 61   LTSL 65
            + SL
Sbjct: 1354 ICSL 1357

[Close]

BLAST of CsaV3_1G030650 vs. Swiss-Prot
Match: sp|P92519|M810_ARATH (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.4e-07
Identity = 31/76 (40.79%), Postives = 44/76 (57.89%), Query Frame = 0


Query: 1   AFVDVDWALDPDDRRSTSRIFVYFYGNLVTWGSKKKHSVSISSTEAAFCCLANAAIELVW 60
           AF D DWA     RRST+    +   N+++W +K++ +VS SSTE  +  LA  A EL W
Sbjct: 166 AFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

Query: 61  LTSLQRTKDLSTETTN 77
            +S  R++D S   TN
Sbjct: 226 -SSASRSRDPSAMNTN 240

[Close]

BLAST of CsaV3_1G030650 vs. Swiss-Prot
Match: sp|Q94HW2|POLR1_ARATH (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.9e-07
Identity = 28/64 (43.75%), Postives = 39/64 (60.94%), Query Frame = 0


Query: 1    AFVDVDWALDPDDRRSTSRIFVYFYGNLVTWGSKKKHSVSISSTEAAFCCLANAAIELVW 60
            A+ D DWA D DD  ST+   VY   + ++W SKK+  V  SSTEA +  +AN + E+ W
Sbjct: 1311 AYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQW 1370

Query: 61   LTSL 65
            + SL
Sbjct: 1371 ICSL 1374

[Close]

BLAST of CsaV3_1G030650 vs. Swiss-Prot
Match: sp|P04146|COPIA_DROME (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 53.9 bits (128), Expect = 9.2e-07
Identity = 29/73 (39.73%), Postives = 44/73 (60.27%), Query Frame = 0


Query: 2    FVDVDWALDPDDRRSTS-RIFVYFYGNLVTWGSKKKHSVSISSTEAAFCCLANAAIELVW 61
            +VD DWA    DR+ST+  +F  F  NL+ W +K+++SV+ SSTEA +  L  A  E +W
Sbjct: 1251 YVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALW 1310

Query: 62   LTSLQRTKDLSTE 74
            L  L  + ++  E
Sbjct: 1311 LKFLLTSINIKLE 1323

[Close]

BLAST of CsaV3_1G030650 vs. TrEMBL
Match: tr|A0A1S4E3F1|A0A1S4E3F1_CUCME (uncharacterized mitochondrial protein AtMg00810-like OS=Cucumis melo OX=3656 GN=LOC107991866 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.3e-13
Identity = 40/63 (63.49%), Postives = 46/63 (73.02%), Query Frame = 0


Query: 2   FVDVDWALDPDDRRSTSRIFVYFYGNLVTWGSKKKHSVSISSTEAAFCCLANAAIELVWL 61
           F D DWA DPDDR+STS  +VYF  NLV+WGSKK   +S SSTEA + CLA  A ELVW+
Sbjct: 129 FADADWASDPDDRKSTSGFYVYFGNNLVSWGSKKHSIISRSSTEAEYRCLALLATELVWI 188

Query: 62  TSL 65
            SL
Sbjct: 189 RSL 191

[Close]

BLAST of CsaV3_1G030650 vs. TrEMBL
Match: tr|A0A151UBI9|A0A151UBI9_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=3821 GN=KK1_020942 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.7e-13
Identity = 39/77 (50.65%), Postives = 54/77 (70.13%), Query Frame = 0


Query: 1   AFVDVDWALDPDDRRSTSRIFVYFYGNLVTWGSKKKHSVSISSTEAAFCCLANAAIELVW 60
           AF D DWA DPDDRRSTSR  V+F  NLV+W SKK+  V+ SSTEA +  +A+A IE++W
Sbjct: 100 AFCDADWASDPDDRRSTSRFCVFFGPNLVSWSSKKQSLVARSSTEAEYRSMAHATIEIIW 159

Query: 61  LTSLQRTKDLSTETTNI 78
           + SL +   + ++T  +
Sbjct: 160 IQSLLKELGIVSDTPTL 176

[Close]

BLAST of CsaV3_1G030650 vs. TrEMBL
Match: tr|A0A1S4E598|A0A1S4E598_CUCME (uncharacterized mitochondrial protein AtMg00810-like OS=Cucumis melo OX=3656 GN=LOC107992166 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.4e-12
Identity = 38/63 (60.32%), Postives = 45/63 (71.43%), Query Frame = 0


Query: 2   FVDVDWALDPDDRRSTSRIFVYFYGNLVTWGSKKKHSVSISSTEAAFCCLANAAIELVWL 61
           FVD DWA DPDDR+STS   VYF  NLV+WGSKK+  +  SST+A + CL   A ELVW+
Sbjct: 157 FVDADWASDPDDRKSTSGFCVYFGNNLVSWGSKKQSIIDRSSTKAEYRCLTLLATELVWI 216

Query: 62  TSL 65
            SL
Sbjct: 217 RSL 219

[Close]

BLAST of CsaV3_1G030650 vs. TrEMBL
Match: tr|A0A2N9FEL3|A0A2N9FEL3_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS13470 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 9.2e-12
Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = 0


Query: 1   AFVDVDWALDPDDRRSTSRIFVYFYGNLVTWGSKKKHSVSISSTEAAFCCLANAAIELVW 60
           AF D DWA DP DRRSTSR+ V+   NL+TW +KK+H++S SSTEA +  LA  A EL W
Sbjct: 440 AFTDADWAGDPSDRRSTSRVIVFLGHNLITWLAKKQHTISRSSTEAEYRSLATGAAELAW 499

Query: 61  L 62
           L
Sbjct: 500 L 500

[Close]

BLAST of CsaV3_1G030650 vs. TrEMBL
Match: tr|A6XN12|A6XN12_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.6e-11
Identity = 37/78 (47.44%), Postives = 51/78 (65.38%), Query Frame = 0


Query: 1   AFVDVDWALDPDDRRSTSRIFVYFYGNLVTWGSKKKHSVSISSTEAAFCCLANAAIELVW 60
           AF D DWA  PDDRRST    +Y   NLV+W +KK+H+V+ SSTEA +  +AN + E+ W
Sbjct: 39  AFCDADWAGCPDDRRSTGGFAIYLGCNLVSWSAKKQHTVARSSTEAEYRAIANTSTEITW 98

Query: 61  LTSLQRTKDLSTETTNIV 79
           L SL +    ST T+ ++
Sbjct: 99  LRSLLQELGFSTSTSPVL 116

The following BLAST results are available for this feature:

BLAST of CsaV3_1G030650 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011648487.1	2.1e-36	100.00	PREDICTED: probable sulfate transporter 3.5 [Cucumis sativus]	[more]
XP_022154958.1	3.5e-15	62.86	uncharacterized protein LOC111022102 [Momordica charantia]	[more]
XP_016902754.1	1.9e-13	63.49	PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Cucumis melo]	[more]
XP_022135935.1	3.3e-13	61.90	uncharacterized protein LOC111007767 [Momordica charantia]	[more]
KYP76690.1	5.7e-13	50.65	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]	[more]

BLAST of CsaV3_1G030650 vs. TAIR10


Match Name	E-value	Identity	Description
ATMG00810.1	7.9e-09	40.79	DNA/RNA polymerases superfamily protein	[more]
AT4G23160.1	3.1e-05	36.23	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]

BLAST of CsaV3_1G030650 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9ZT94\|POLR2_ARATH	1.1e-07	45.31	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
sp\|P92519\|M810_ARATH	1.4e-07	40.79	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]
sp\|Q94HW2\|POLR1_ARATH	1.9e-07	43.75	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
sp\|P04146\|COPIA_DROME	9.2e-07	39.73	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]

BLAST of CsaV3_1G030650 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4E3F1\|A0A1S4E3F1_CUCME	1.3e-13	63.49	uncharacterized mitochondrial protein AtMg00810-like OS=Cucumis melo OX=3656 GN=...	[more]
tr\|A0A151UBI9\|A0A151UBI9_CAJCA	3.7e-13	50.65	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=...	[more]
tr\|A0A1S4E598\|A0A1S4E598_CUCME	2.4e-12	60.32	uncharacterized mitochondrial protein AtMg00810-like OS=Cucumis melo OX=3656 GN=...	[more]
tr\|A0A2N9FEL3\|A0A2N9FEL3_FAGSY	9.2e-12	59.02	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS13470 PE=4 SV=1	[more]
tr\|A6XN12\|A6XN12_PRUPE	1.6e-11	47.44	Uncharacterized protein OS=Prunus persica OX=3760 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G030650.1	CsaV3_1G030650.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 2..64
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 1..64 e-value: 7.70066E-24 score: 87.5237

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G030650	Melon (DHL92) v3.6.1	cucmedB055
CsaV3_1G030650	Melon (DHL92) v3.6.1	cucmedB076
CsaV3_1G030650	Watermelon (Charleston Gray)	cucwcgB009
CsaV3_1G030650	Watermelon (Charleston Gray)	cucwcgB078
CsaV3_1G030650	Watermelon (97103) v1	cucwmB090
CsaV3_1G030650	Watermelon (97103) v1	cucwmB095
CsaV3_1G030650	Watermelon (97103) v2	cucwmbB067
CsaV3_1G030650	Wax gourd	cucwgoB108
CsaV3_1G030650	Cucumber (Chinese Long) v3	cuccucB009
CsaV3_1G030650	Silver-seed gourd	carcucB0040
CsaV3_1G030650	Silver-seed gourd	carcucB0144
CsaV3_1G030650	Silver-seed gourd	carcucB0603
CsaV3_1G030650	Cucumber (Gy14) v2	cgybcucB001
CsaV3_1G030650	Cucumber (Gy14) v2	cgybcucB059
CsaV3_1G030650	Cucumber (Gy14) v1	cgycucB353
CsaV3_1G030650	Cucurbita maxima (Rimu)	cmacucB0073
CsaV3_1G030650	Cucurbita maxima (Rimu)	cmacucB0116
CsaV3_1G030650	Cucurbita moschata (Rifu)	cmocucB0060
CsaV3_1G030650	Cucurbita moschata (Rifu)	cmocucB0104
CsaV3_1G030650	Cucurbita pepo (Zucchini)	cpecucB0105
CsaV3_1G030650	Cucurbita pepo (Zucchini)	cpecucB0434
CsaV3_1G030650	Cucurbita pepo (Zucchini)	cpecucB0800
CsaV3_1G030650	Wild cucumber (PI 183967)	cpicucB000
CsaV3_1G030650	Wild cucumber (PI 183967)	cpicucB073
CsaV3_1G030650	Bottle gourd (USVL1VR-Ls)	cuclsiB010
CsaV3_1G030650	Bottle gourd (USVL1VR-Ls)	cuclsiB072
CsaV3_1G030650	Melon (DHL92) v3.5.1	cucmeB058
CsaV3_1G030650	Melon (DHL92) v3.5.1	cucmeB082