CsaV3_1G030490 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G030490
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionTransmembrane protein, putative
Locationchr1 : 17417362 .. 17417570 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAATCTTACCCCCTTTCTGTTTAGGTCACTCGTAAGGCTGCTACTATCCCTAATTGTCCAGCCTGTGGCCTCTGTCTCAACCTTGCTTTTCTACAGTGACATTCTTCCTCAGCATATGGTTTCAGAGCGACTTGTTCGACATGAATTGCTTGATCGAGAAAACTACCTATTCCATTTTCTTGTTAACTTTTTGAAGTGCTTTTGGTGA

mRNA sequence

AATCTTACCCCCTTTCTGTTTAGGTCACTCGTAAGGCTGCTACTATCCCTAATTGTCCAGCCTGTGGCCTCTGTCTCAACCTTGCTTTTCTACAGTGACATTCTTCCTCAGCATATGGTTTCAGAGCGACTTGTTCGACATGAATTGCTTGATCGAGAAAACTACCTATTCCATTTTCTTGTTAACTTTTTGAAGTGCTTTTGGTG

Coding sequence (CDS)

AATCTTACCCCCTTTCTGTTTAGGTCACTCGTAAGGCTGCTACTATCCCTAATTGTCCAGCCTGTGGCCTCTGTCTCAACCTTGCTTTTCTACAGTGACATTCTTCCTCAGCATATGGTTTCAGAGCGACTTGTTCGACATGAATTGCTTGATCGAGAAAACTACCTATTCCATTTTCTTGTTAACTTTTTGAAGTGCTTTTGGTG

Protein sequence

NLTPFLFRSLVRLLLSLIVQPVASVSTLLFYSDILPQHMVSERLVRHELLDRENYLFHFLVNFLKCFWX
Homology
[Close]
BLAST of CsaV3_1G030490 vs. NCBI nr
Match: KGN65350.1 (hypothetical protein Csa_1G366970 [Cucumis sativus])

HSP 1 Score: 133.3 bits (334), Expect = 3.2e-28
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 1  NLTPFLFRSLVRLLLSLIVQPVASVSTLLFYSDILPQHMVSERLVRHELLDRENYLFHFL 60
          NLTPFLFRSLVRLLLSLIVQPVASVSTLLFYSDILPQHMVSERLVRHELLDRENYLFHFL
Sbjct: 2  NLTPFLFRSLVRLLLSLIVQPVASVSTLLFYSDILPQHMVSERLVRHELLDRENYLFHFL 61

Query: 61 VNFLKCFW 69
          VNFLKCFW
Sbjct: 62 VNFLKCFW 69

[Close]
BLAST of CsaV3_1G030490 vs. NCBI nr
Match: PQM39313.1 (hypothetical protein Pyn_28550 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 107.8 bits (268), Expect = 1.5e-20
Identity = 51/68 (75.00%), Postives = 63/68 (92.65%), Query Frame = 0 

Query: 1  NLTPFLFRSLVRLLLSLIVQPVASVSTLLFYSDILPQHMVSERLVRHELLDRENYLFHFL 60
          +LTP +FRSL+RLL SLI +P ASVSTLL+YS++LPQ+++ ERLVRHELLDRENYLFHFL
Sbjct: 2  SLTPLMFRSLMRLLTSLIGEPAASVSTLLYYSELLPQNIILERLVRHELLDRENYLFHFL 61

Query: 61 VNFLKCFW 69
          +NFL+CFW
Sbjct: 62 INFLRCFW 69

[Close]
BLAST of CsaV3_1G030490 vs. NCBI nr
Match: PQQ09806.1 (hypothetical protein Pyn_16745 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 107.8 bits (268), Expect = 1.5e-20
Identity = 51/68 (75.00%), Postives = 63/68 (92.65%), Query Frame = 0 

Query: 1  NLTPFLFRSLVRLLLSLIVQPVASVSTLLFYSDILPQHMVSERLVRHELLDRENYLFHFL 60
          +LTP +FRSL+RLL SLI +P ASVSTLL+YS++LPQ+++ ERLVRHELLDRENYLFHFL
Sbjct: 2  SLTPLMFRSLMRLLTSLIGEPAASVSTLLYYSELLPQNIILERLVRHELLDRENYLFHFL 61

Query: 61 VNFLKCFW 69
          +NFL+CFW
Sbjct: 62 INFLRCFW 69

[Close]
BLAST of CsaV3_1G030490 vs. NCBI nr
Match: XP_002281062.2 (PREDICTED: uncharacterized protein LOC100257802 isoform X1 [Vitis vinifera])

HSP 1 Score: 106.7 bits (265), Expect = 3.2e-20
Identity = 50/68 (73.53%), Postives = 63/68 (92.65%), Query Frame = 0 

Query: 1   NLTPFLFRSLVRLLLSLIVQPVASVSTLLFYSDILPQHMVSERLVRHELLDRENYLFHFL 60
           +LTP +FRSLVRL+ SL+ QP AS+STLL+YSD+LPQ++V ERLV+HELLD+ENYLFHFL
Sbjct: 73  SLTPLMFRSLVRLVSSLVGQPAASISTLLYYSDLLPQNIVLERLVQHELLDQENYLFHFL 132

Query: 61  VNFLKCFW 69
           +NFL+CFW
Sbjct: 133 INFLRCFW 140

[Close]
BLAST of CsaV3_1G030490 vs. NCBI nr
Match: CBI28080.3 (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 106.7 bits (265), Expect = 3.2e-20
Identity = 50/68 (73.53%), Postives = 63/68 (92.65%), Query Frame = 0 

Query: 1   NLTPFLFRSLVRLLLSLIVQPVASVSTLLFYSDILPQHMVSERLVRHELLDRENYLFHFL 60
           +LTP +FRSLVRL+ SL+ QP AS+STLL+YSD+LPQ++V ERLV+HELLD+ENYLFHFL
Sbjct: 72  SLTPLMFRSLVRLVSSLVGQPAASISTLLYYSDLLPQNIVLERLVQHELLDQENYLFHFL 131

Query: 61  VNFLKCFW 69
           +NFL+CFW
Sbjct: 132 INFLRCFW 139

[Close]
BLAST of CsaV3_1G030490 vs. TrEMBL
Match: tr|A0A0A0LTU9|A0A0A0LTU9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G366970 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.1e-28
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 1  NLTPFLFRSLVRLLLSLIVQPVASVSTLLFYSDILPQHMVSERLVRHELLDRENYLFHFL 60
          NLTPFLFRSLVRLLLSLIVQPVASVSTLLFYSDILPQHMVSERLVRHELLDRENYLFHFL
Sbjct: 2  NLTPFLFRSLVRLLLSLIVQPVASVSTLLFYSDILPQHMVSERLVRHELLDRENYLFHFL 61

Query: 61 VNFLKCFW 69
          VNFLKCFW
Sbjct: 62 VNFLKCFW 69

[Close]
BLAST of CsaV3_1G030490 vs. TrEMBL
Match: tr|D7TBP5|D7TBP5_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_11s0016g04000 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.1e-20
Identity = 50/68 (73.53%), Postives = 63/68 (92.65%), Query Frame = 0 

Query: 1   NLTPFLFRSLVRLLLSLIVQPVASVSTLLFYSDILPQHMVSERLVRHELLDRENYLFHFL 60
           +LTP +FRSLVRL+ SL+ QP AS+STLL+YSD+LPQ++V ERLV+HELLD+ENYLFHFL
Sbjct: 72  SLTPLMFRSLVRLVSSLVGQPAASISTLLYYSDLLPQNIVLERLVQHELLDQENYLFHFL 131

Query: 61  VNFLKCFW 69
           +NFL+CFW
Sbjct: 132 INFLRCFW 139

[Close]
BLAST of CsaV3_1G030490 vs. TrEMBL
Match: tr|A0A2P6RJI3|A0A2P6RJI3_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0090511 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 4.8e-20
Identity = 52/68 (76.47%), Postives = 61/68 (89.71%), Query Frame = 0 

Query: 1  NLTPFLFRSLVRLLLSLIVQPVASVSTLLFYSDILPQHMVSERLVRHELLDRENYLFHFL 60
          +L P +FRSLVRLL SLI  P AS+STLLFYS++LPQ++V ERLVRHELLD+ENYLFHFL
Sbjct: 2  SLGPLMFRSLVRLLTSLIRDPAASISTLLFYSELLPQNIVLERLVRHELLDQENYLFHFL 61

Query: 61 VNFLKCFW 69
          VNFL+CFW
Sbjct: 62 VNFLRCFW 69

[Close]
BLAST of CsaV3_1G030490 vs. TrEMBL
Match: tr|A0A2P4HLM4|A0A2P4HLM4_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_01822 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.4e-19
Identity = 51/68 (75.00%), Postives = 59/68 (86.76%), Query Frame = 0 

Query: 1  NLTPFLFRSLVRLLLSLIVQPVASVSTLLFYSDILPQHMVSERLVRHELLDRENYLFHFL 60
          +LTP +FRSL+RLL SLI  P ASVSTLLFYSD+LPQ+ V ERLV+HELL  ENYLFHFL
Sbjct: 2  SLTPLMFRSLLRLLTSLIGDPAASVSTLLFYSDLLPQNTVLERLVQHELLHEENYLFHFL 61

Query: 61 VNFLKCFW 69
          +NFL+CFW
Sbjct: 62 INFLRCFW 69

[Close]
BLAST of CsaV3_1G030490 vs. TrEMBL
Match: tr|A0A2C9UBY3|A0A2C9UBY3_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_16G116500 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 4.0e-19
Identity = 48/67 (71.64%), Postives = 61/67 (91.04%), Query Frame = 0 

Query: 2   LTPFLFRSLVRLLLSLIVQPVASVSTLLFYSDILPQHMVSERLVRHELLDRENYLFHFLV 61
           LTP +FRS+VRLL SLI +P AS+ST+LFYS++LPQ+++ ERLVRHELLD EN+LFHF+V
Sbjct: 55  LTPVMFRSVVRLLTSLISEPAASISTILFYSELLPQNIILERLVRHELLDNENHLFHFVV 114

Query: 62  NFLKCFW 69
           NFL+CFW
Sbjct: 115 NFLRCFW 121

The following BLAST results are available for this feature:
BLAST of CsaV3_1G030490 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN65350.13.2e-28100.00hypothetical protein Csa_1G366970 [Cucumis sativus][more]
PQM39313.11.5e-2075.00hypothetical protein Pyn_28550 [Prunus yedoensis var. nudiflora][more]
PQQ09806.11.5e-2075.00hypothetical protein Pyn_16745 [Prunus yedoensis var. nudiflora][more]
XP_002281062.23.2e-2073.53PREDICTED: uncharacterized protein LOC100257802 isoform X1 [Vitis vinifera][more]
CBI28080.33.2e-2073.53unnamed protein product, partial [Vitis vinifera][more]
BLAST of CsaV3_1G030490 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G030490 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G030490 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LTU9|A0A0A0LTU9_CUCSA2.1e-28100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G366970 PE=4 SV=1[more]
tr|D7TBP5|D7TBP5_VITVI2.1e-2073.53Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_11s0016g04000 PE=4 SV=... [more]
tr|A0A2P6RJI3|A0A2P6RJI3_ROSCH4.8e-2076.47Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0090511 PE=4... [more]
tr|A0A2P4HLM4|A0A2P4HLM4_QUESU2.4e-1975.00Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_01822 PE=4 SV=1[more]
tr|A0A2C9UBY3|A0A2C9UBY3_MANES4.0e-1971.64Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_16G116500 PE=4 SV=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G030490.1CsaV3_1G030490.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37900FAMILY NOT NAMEDcoord: 2..68

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G030490Cucsa.235540Cucumber (Gy14) v1cgycucB353
CsaV3_1G030490Cla97C06G118240Watermelon (97103) v2cucwmbB082
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G030490Cucumber (Gy14) v2cgybcucB001
CsaV3_1G030490Cucurbita maxima (Rimu)cmacucB0073
CsaV3_1G030490Cucurbita maxima (Rimu)cmacucB0116
CsaV3_1G030490Cucurbita moschata (Rifu)cmocucB0060
CsaV3_1G030490Cucurbita moschata (Rifu)cmocucB0104
CsaV3_1G030490Cucurbita pepo (Zucchini)cpecucB0434
CsaV3_1G030490Cucurbita pepo (Zucchini)cpecucB0800
CsaV3_1G030490Wild cucumber (PI 183967)cpicucB000
CsaV3_1G030490Wild cucumber (PI 183967)cpicucB073
CsaV3_1G030490Bottle gourd (USVL1VR-Ls)cuclsiB010
CsaV3_1G030490Bottle gourd (USVL1VR-Ls)cuclsiB072
CsaV3_1G030490Melon (DHL92) v3.5.1cucmeB058
CsaV3_1G030490Melon (DHL92) v3.5.1cucmeB082
CsaV3_1G030490Melon (DHL92) v3.6.1cucmedB055
CsaV3_1G030490Melon (DHL92) v3.6.1cucmedB076
CsaV3_1G030490Watermelon (Charleston Gray)cucwcgB009
CsaV3_1G030490Watermelon (97103) v1cucwmB090
CsaV3_1G030490Watermelon (97103) v1cucwmB108
CsaV3_1G030490Wax gourdcucwgoB108
CsaV3_1G030490Silver-seed gourdcarcucB0040
CsaV3_1G030490Silver-seed gourdcarcucB0144
CsaV3_1G030490Silver-seed gourdcarcucB0603