CsaV3_1G030260 (gene) Cucumber (Chinese Long) v3

NameCsaV3_1G030260
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionTransposon Ty3-I Gag-Pol polyprotein
Locationchr1 : 17054985 .. 17055147 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTACCGCAACGGGCAGTGGGGTTCGGCGCGAAAACAACTTCCGCAGGTGGACCGATTCTGAGCTCCAAGCACGACGAGAAAAGGGACTTTGCTATCAGTGTGACGAACCGTTTAGCAAGGGACATCGCTGCAAAAACAAAGAGCTCCGCCTTTACCTTGTAG

mRNA sequence

GTTACCGCAACGGGCAGTGGGGTTCGGCGCGAAAACAACTTCCGCAGGTGGACCGATTCTGAGCTCCAAGCACGACGAGAAAAGGGACTTTGCTATCAGTGTGACGAACCGTTTAGCAAGGGACATCGCTGCAAAAACAAAGAGCTCCGCCTTTACCTTGTAG

Coding sequence (CDS)

GTTACCGCAACGGGCAGTGGGGTTCGGCGCGAAAACAACTTCCGCAGGTGGACCGATTCTGAGCTCCAAGCACGACGAGAAAAGGGACTTTGCTATCAGTGTGACGAACCGTTTAGCAAGGGACATCGCTGCAAAAACAAAGAGCTCCGCCTTTACCTTGTAG

Protein sequence

VTATGSGVRRENNFRRWTDSELQARREKGLCYQCDEPFSKGHRCKNKELRLYLVX
BLAST of CsaV3_1G030260 vs. NCBI nr
Match: ADN34016.1 (ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 85.5 bits (210), Expect = 6.2e-14
Identity = 36/50 (72.00%), Postives = 45/50 (90.00%), Query Frame = 0

Query: 5   GSGVRRENNFRRWTDSELQARREKGLCYQCDEPFSKGHRCKNKELRLYLV 55
           G G RRE ++RRW DS+LQAR+EKGLCY+CD+PFSKGHRCKN+EL+L +V
Sbjct: 280 GGGGRREPSYRRWIDSKLQARKEKGLCYRCDKPFSKGHRCKNRELKLCVV 329

BLAST of CsaV3_1G030260 vs. NCBI nr
Match: XP_024028604.1 (uncharacterized protein LOC112093764 [Morus notabilis])

HSP 1 Score: 65.1 bits (157), Expect = 8.6e-08
Identity = 30/53 (56.60%), Postives = 39/53 (73.58%), Query Frame = 0

Query: 2   TATGSGVRRENNFRRWTDSELQARREKGLCYQCDEPFSKGHRCKNKELRLYLV 55
           T+TG G     +FRR TD E+Q RR KGLCY+CDE +  GHRCKN++L++ LV
Sbjct: 306 TSTGEG--GGASFRRLTDDEIQRRRAKGLCYRCDEKYGPGHRCKNQQLQVLLV 356

BLAST of CsaV3_1G030260 vs. NCBI nr
Match: XP_024018362.1 (uncharacterized protein LOC112090683 [Morus notabilis])

HSP 1 Score: 64.7 bits (156), Expect = 1.1e-07
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 0

Query: 14  FRRWTDSELQARREKGLCYQCDEPFSKGHRCKNKELRLYLV 55
           F+R TD E Q RR KGLCY+CDE FS GHRCKN++L++ LV
Sbjct: 320 FKRMTDEEYQRRRAKGLCYRCDEKFSPGHRCKNRQLQVLLV 360

BLAST of CsaV3_1G030260 vs. NCBI nr
Match: CAN65491.1 (hypothetical protein VITISV_003157 [Vitis vinifera])

HSP 1 Score: 64.3 bits (155), Expect = 1.5e-07
Identity = 31/45 (68.89%), Postives = 37/45 (82.22%), Query Frame = 0

Query: 10  RENNFRRWTDSELQARREKGLCYQCDEPFSKGHRCKNKELRLYLV 55
           RE   +R T+SELQARREKG+C++CDE FS GHRCK KELR+ LV
Sbjct: 174 REIPIKRLTESELQARREKGICFKCDEKFSLGHRCK-KELRVLLV 217

BLAST of CsaV3_1G030260 vs. NCBI nr
Match: XP_019446853.1 (PREDICTED: uncharacterized protein LOC109350125 [Lupinus angustifolius])

HSP 1 Score: 63.9 bits (154), Expect = 1.9e-07
Identity = 27/48 (56.25%), Postives = 36/48 (75.00%), Query Frame = 0

Query: 4   TGSGVRRENNFRRWTDSELQARREKGLCYQCDEPFSKGHRCKNKELRL 52
           T S   R   FR  T SEL+ +R+KGLC++CDEP+S+ HRCKNK+LR+
Sbjct: 307 TASSRARGGEFRHLTSSELKDKRDKGLCFKCDEPYSREHRCKNKQLRM 354

BLAST of CsaV3_1G030260 vs. TrEMBL
Match: tr|E5GC18|E5GC18_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 4.1e-14
Identity = 36/50 (72.00%), Postives = 45/50 (90.00%), Query Frame = 0

Query: 5   GSGVRRENNFRRWTDSELQARREKGLCYQCDEPFSKGHRCKNKELRLYLV 55
           G G RRE ++RRW DS+LQAR+EKGLCY+CD+PFSKGHRCKN+EL+L +V
Sbjct: 280 GGGGRREPSYRRWIDSKLQARKEKGLCYRCDKPFSKGHRCKNRELKLCVV 329

BLAST of CsaV3_1G030260 vs. TrEMBL
Match: tr|A5BCT4|A5BCT4_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_003157 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 9.7e-08
Identity = 31/45 (68.89%), Postives = 37/45 (82.22%), Query Frame = 0

Query: 10  RENNFRRWTDSELQARREKGLCYQCDEPFSKGHRCKNKELRLYLV 55
           RE   +R T+SELQARREKG+C++CDE FS GHRCK KELR+ LV
Sbjct: 174 REIPIKRLTESELQARREKGICFKCDEKFSLGHRCK-KELRVLLV 217

BLAST of CsaV3_1G030260 vs. TrEMBL
Match: tr|A5B2I6|A5B2I6_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_043911 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 8.2e-07
Identity = 31/46 (67.39%), Postives = 37/46 (80.43%), Query Frame = 0

Query: 9    RRENNFRRWTDSELQARREKGLCYQCDEPFSKGHRCKNKELRLYLV 55
            RRE   +R T+SELQARREKGL ++C+E FS GHRCK KELR+ LV
Sbjct: 971  RREIPIKRLTESELQARREKGLWFKCEEKFSPGHRCK-KELRVLLV 1015

BLAST of CsaV3_1G030260 vs. TrEMBL
Match: tr|W9R6D8|W9R6D8_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_026170 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.4e-06
Identity = 25/41 (60.98%), Postives = 33/41 (80.49%), Query Frame = 0

Query: 14  FRRWTDSELQARREKGLCYQCDEPFSKGHRCKNKELRLYLV 55
           FRR  D+ELQA+REKGLCY+CD  +  GHRC N+EL++ +V
Sbjct: 198 FRRMIDAELQAKREKGLCYRCDGKYYVGHRCPNRELQVLIV 238

BLAST of CsaV3_1G030260 vs. TrEMBL
Match: tr|A0A2I0VA20|A0A2I0VA20_9ASPA (Putative mitochondrial protein OS=Dendrobium catenatum OX=906689 GN=MA16_Dca024112 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.1e-06
Identity = 25/44 (56.82%), Postives = 34/44 (77.27%), Query Frame = 0

Query: 11 ENNFRRWTDSELQARREKGLCYQCDEPFSKGHRCKNKELRLYLV 55
          +  FRR T++EL+ +R KGLCY+CDE F  GHRCK+K L++ LV
Sbjct: 55 KGEFRRLTEAELKDKRAKGLCYRCDEKFGPGHRCKDKLLQVLLV 98

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
ADN34016.16.2e-1472.00ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo][more]
XP_024028604.18.6e-0856.60uncharacterized protein LOC112093764 [Morus notabilis][more]
XP_024018362.11.1e-0765.85uncharacterized protein LOC112090683 [Morus notabilis][more]
CAN65491.11.5e-0768.89hypothetical protein VITISV_003157 [Vitis vinifera][more]
XP_019446853.11.9e-0756.25PREDICTED: uncharacterized protein LOC109350125 [Lupinus angustifolius][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|E5GC18|E5GC18_CUCME4.1e-1472.00Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=... [more]
tr|A5BCT4|A5BCT4_VITVI9.7e-0868.89Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_003157 PE=4 SV=1[more]
tr|A5B2I6|A5B2I6_VITVI8.2e-0767.39Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_043911 PE=4 SV=1[more]
tr|W9R6D8|W9R6D8_9ROSA1.4e-0660.98Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_026170 PE=4 SV=1[more]
tr|A0A2I0VA20|A0A2I0VA20_9ASPA3.1e-0656.82Putative mitochondrial protein OS=Dendrobium catenatum OX=906689 GN=MA16_Dca0241... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G030260.1CsaV3_1G030260.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G030260Cucumber (Chinese Long) v3cuccucB006
CsaV3_1G030260Cucumber (Chinese Long) v3cuccucB028
CsaV3_1G030260Cucumber (Chinese Long) v3cuccucB061
CsaV3_1G030260Silver-seed gourdcarcucB0041
CsaV3_1G030260Silver-seed gourdcarcucB0143
CsaV3_1G030260Silver-seed gourdcarcucB0285
CsaV3_1G030260Silver-seed gourdcarcucB0602
CsaV3_1G030260Cucumber (Gy14) v2cgybcucB001
CsaV3_1G030260Cucumber (Gy14) v2cgybcucB057
CsaV3_1G030260Cucumber (Gy14) v1cgycucB188
CsaV3_1G030260Cucumber (Gy14) v1cgycucB455
CsaV3_1G030260Cucurbita maxima (Rimu)cmacucB0070
CsaV3_1G030260Cucurbita maxima (Rimu)cmacucB0118
CsaV3_1G030260Cucurbita maxima (Rimu)cmacucB0190
CsaV3_1G030260Cucurbita maxima (Rimu)cmacucB0925
CsaV3_1G030260Cucurbita moschata (Rifu)cmocucB0056
CsaV3_1G030260Cucurbita moschata (Rifu)cmocucB0106
CsaV3_1G030260Cucurbita moschata (Rifu)cmocucB0174
CsaV3_1G030260Cucurbita moschata (Rifu)cmocucB0917
CsaV3_1G030260Cucurbita pepo (Zucchini)cpecucB0102
CsaV3_1G030260Cucurbita pepo (Zucchini)cpecucB0433
CsaV3_1G030260Cucurbita pepo (Zucchini)cpecucB0802
CsaV3_1G030260Cucurbita pepo (Zucchini)cpecucB1000
CsaV3_1G030260Wild cucumber (PI 183967)cpicucB000
CsaV3_1G030260Wild cucumber (PI 183967)cpicucB070
CsaV3_1G030260Wild cucumber (PI 183967)cpicucB200
CsaV3_1G030260Wild cucumber (PI 183967)cpicucB421
CsaV3_1G030260Bottle gourd (USVL1VR-Ls)cuclsiB006
CsaV3_1G030260Bottle gourd (USVL1VR-Ls)cuclsiB070
CsaV3_1G030260Melon (DHL92) v3.5.1cucmeB057
CsaV3_1G030260Melon (DHL92) v3.5.1cucmeB079
CsaV3_1G030260Melon (DHL92) v3.5.1cucmeB088
CsaV3_1G030260Melon (DHL92) v3.6.1cucmedB054
CsaV3_1G030260Melon (DHL92) v3.6.1cucmedB073
CsaV3_1G030260Watermelon (Charleston Gray)cucwcgB076
CsaV3_1G030260Watermelon (Charleston Gray)cucwcgB008
CsaV3_1G030260Watermelon (97103) v1cucwmB086
CsaV3_1G030260Watermelon (97103) v1cucwmB093
CsaV3_1G030260Watermelon (97103) v2cucwmbB018
CsaV3_1G030260Watermelon (97103) v2cucwmbB065
CsaV3_1G030260Watermelon (97103) v2cucwmbB092
CsaV3_1G030260Wax gourdcucwgoB002
CsaV3_1G030260Wax gourdcucwgoB084
CsaV3_1G030260Wax gourdcucwgoB107