CsaV3_1G030240 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G030240
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionFasciclin-like arabinogalactan protein
Locationchr1 : 17025219 .. 17025452 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTCCACATCGTCTTGGACTACTAAGATCCCGCAAAACTCCACAAGATCTCCAACGGGACCACTCTTTGCACTACGCTCTATACCAAACCACAAGTCACGCTCTTGGAAATCTATATTTCTTCAACATTACCGATCTCCAAGCCGATAAGGTTGGATTCGGCTCCGTCGTACCCGGATCTAAACTTGAATCAAGTTACATGAAGTGGGTTGTGAGTTTGCCATACAACATTTCG

mRNA sequence

TCTCCACATCGTCTTGGACTACTAAGATCCCGCAAAACTCCACAAGATCTCCAACGGGACCACTCTTTGCACTACGCTCTATACCAAACCACAAGTCACGCTCTTGGAAATCTATATTTCTTCAACATTACCGATCTCCAAGCCGATAAGGTTGGATTCGGCTCCGTCGTACCCGGATCTAAACTTGAATCAAGTTACATGAAGTGGGTTGTGAGTTTGCCATACAACATTTCG

Coding sequence (CDS)

TCTCCACATCGTCTTGGACTACTAAGATCCCGCAAAACTCCACAAGATCTCCAACGGGACCACTCTTTGCACTACGCTCTATACCAAACCACAAGTCACGCTCTTGGAAATCTATATTTCTTCAACATTACCGATCTCCAAGCCGATAAGGTTGGATTCGGCTCCGTCGTACCCGGATCTAAACTTGAATCAAGTTACATGAAGTGGGTTGTGAGTTTGCCATACAACATTTCG

Protein sequence

SPHRLGLLRSRKTPQDLQRDHSLHYALYQTTSHALGNLYFFNITDLQADKVGFGSVVPGSKLESSYMKWVVSLPYNIS
Homology
[Close]
BLAST of CsaV3_1G030240 vs. NCBI nr
Match: XP_004153890.1 (PREDICTED: fasciclin-like arabinogalactan protein 10 [Cucumis sativus] >KGN46232.1 hypothetical protein Csa_6G076800 [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 8.7e-14
Identity = 44/57 (77.19%), Postives = 45/57 (78.95%), Query Frame = 0 

Query: 22  SLHYALYQTTSHALGNLYFFNITDLQADKVGFGSVVPGSKLESSYMKWVVSLPYNIS 79
           +L   LYQTT HA GNL F NITDLQ  KVGFGS VPGSKLESSY K VVSLPYNIS
Sbjct: 105 TLSTTLYQTTGHAPGNLGFVNITDLQGGKVGFGSAVPGSKLESSYTKSVVSLPYNIS 161

[Close]
BLAST of CsaV3_1G030240 vs. NCBI nr
Match: XP_008460132.1 (PREDICTED: fasciclin-like arabinogalactan protein 10 [Cucumis melo])

HSP 1 Score: 82.4 bits (202), Expect = 7.4e-13
Identity = 42/57 (73.68%), Postives = 44/57 (77.19%), Query Frame = 0 

Query: 22  SLHYALYQTTSHALGNLYFFNITDLQADKVGFGSVVPGSKLESSYMKWVVSLPYNIS 79
           +L   LYQTT HA GNL F NITDLQ  KV FGS VPGSKLESSY K VVS+PYNIS
Sbjct: 105 TLSTTLYQTTGHAPGNLGFVNITDLQGGKVAFGSAVPGSKLESSYTKSVVSMPYNIS 161

[Close]
BLAST of CsaV3_1G030240 vs. NCBI nr
Match: NP_191649.1 (FASCICLIN-like arabinogalactan-protein 10 [Arabidopsis thaliana] >Q9LZX4.1 RecName: Full=Fasciclin-like arabinogalactan protein 10; Flags: Precursor >CAB82694.1 endosperm specific protein-like [Arabidopsis thaliana] >AAM65173.1 endosperm specific protein-like [Arabidopsis thaliana] >AEE80125.1 FASCICLIN-like arabinogalactan-protein 10 [Arabidopsis thaliana])

HSP 1 Score: 79.7 bits (195), Expect = 4.8e-12
Identity = 39/62 (62.90%), Postives = 45/62 (72.58%), Query Frame = 0 

Query: 17  LQRDHSLHYALYQTTSHALGNLYFFNITDLQADKVGFGSVVPGSKLESSYMKWVVSLPYN 76
           L +  +L   LYQTT HALGNL F N+TDL+  KVGFGS  PGSKL+SSY K V  +PYN
Sbjct: 103 LSKGTTLTTTLYQTTGHALGNLGFVNVTDLKGGKVGFGSAAPGSKLDSSYTKSVKQIPYN 162

Query: 77  IS 79
           IS
Sbjct: 163 IS 164

[Close]
BLAST of CsaV3_1G030240 vs. NCBI nr
Match: AAK55685.1 (AT3g60900/T4C21_310, partial [Arabidopsis thaliana])

HSP 1 Score: 79.7 bits (195), Expect = 4.8e-12
Identity = 39/62 (62.90%), Postives = 45/62 (72.58%), Query Frame = 0 

Query: 17  LQRDHSLHYALYQTTSHALGNLYFFNITDLQADKVGFGSVVPGSKLESSYMKWVVSLPYN 76
           L +  +L   LYQTT HALGNL F N+TDL+  KVGFGS  PGSKL+SSY K V  +PYN
Sbjct: 103 LSKGTTLTTTLYQTTGHALGNLGFVNVTDLKGGKVGFGSAAPGSKLDSSYTKSVKQIPYN 162

Query: 77  IS 79
           IS
Sbjct: 163 IS 164

[Close]
BLAST of CsaV3_1G030240 vs. NCBI nr
Match: OAP04160.1 (FLA10 [Arabidopsis thaliana])

HSP 1 Score: 79.7 bits (195), Expect = 4.8e-12
Identity = 39/62 (62.90%), Postives = 45/62 (72.58%), Query Frame = 0 

Query: 17  LQRDHSLHYALYQTTSHALGNLYFFNITDLQADKVGFGSVVPGSKLESSYMKWVVSLPYN 76
           L +  +L   LYQTT HALGNL F N+TDL+  KVGFGS  PGSKL+SSY K V  +PYN
Sbjct: 103 LSKGTTLTTTLYQTTGHALGNLGFVNVTDLKGGKVGFGSAAPGSKLDSSYTKSVKQIPYN 162

Query: 77  IS 79
           IS
Sbjct: 163 IS 164

[Close]
BLAST of CsaV3_1G030240 vs. TAIR10
Match: AT3G60900.1 (FASCICLIN-like arabinogalactan-protein 10)

HSP 1 Score: 79.7 bits (195), Expect = 8.7e-16
Identity = 39/62 (62.90%), Postives = 45/62 (72.58%), Query Frame = 0 

Query: 17  LQRDHSLHYALYQTTSHALGNLYFFNITDLQADKVGFGSVVPGSKLESSYMKWVVSLPYN 76
           L +  +L   LYQTT HALGNL F N+TDL+  KVGFGS  PGSKL+SSY K V  +PYN
Sbjct: 103 LSKGTTLTTTLYQTTGHALGNLGFVNVTDLKGGKVGFGSAAPGSKLDSSYTKSVKQIPYN 162

Query: 77  IS 79
           IS
Sbjct: 163 IS 164

[Close]
BLAST of CsaV3_1G030240 vs. TAIR10
Match: AT2G45470.1 (FASCICLIN-like arabinogalactan protein 8)

HSP 1 Score: 71.2 bits (173), Expect = 3.1e-13
Identity = 36/62 (58.06%), Postives = 43/62 (69.35%), Query Frame = 0 

Query: 17  LQRDHSLHYALYQTTSHALGNLYFFNITDLQADKVGFGSVVPGSKLESSYMKWVVSLPYN 76
           + +  +L   LYQTT +A GNL F NITDL+  KVGFGS   GSKL+SSY K V  +PYN
Sbjct: 103 ISKGTTLSTTLYQTTGNAPGNLGFVNITDLKGGKVGFGSAASGSKLDSSYTKSVKQIPYN 162

Query: 77  IS 79
           IS
Sbjct: 163 IS 164

[Close]
BLAST of CsaV3_1G030240 vs. TAIR10
Match: AT5G55730.1 (FASCICLIN-like arabinogalactan 1)

HSP 1 Score: 45.8 bits (107), Expect = 1.4e-05
Identity = 26/57 (45.61%), Postives = 33/57 (57.89%), Query Frame = 0 

Query: 22  SLHYALYQTTSHALGNLYFFNITDLQADKVGFGSVVPGSKLESSYMKWVVSLPYNIS 79
           +L   L+Q T  A G   F NITDL+  KVGFG    G  L S ++K +  +PYNIS
Sbjct: 108 ALAATLFQATGAAPGTSGFVNITDLRGGKVGFGP--DGGDLSSFFVKSIEEVPYNIS 162

[Close]
BLAST of CsaV3_1G030240 vs. Swiss-Prot
Match: sp|Q9LZX4|FLA10_ARATH (Fasciclin-like arabinogalactan protein 10 OS=Arabidopsis thaliana OX=3702 GN=FLA10 PE=2 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.6e-14
Identity = 39/62 (62.90%), Postives = 45/62 (72.58%), Query Frame = 0 

Query: 17  LQRDHSLHYALYQTTSHALGNLYFFNITDLQADKVGFGSVVPGSKLESSYMKWVVSLPYN 76
           L +  +L   LYQTT HALGNL F N+TDL+  KVGFGS  PGSKL+SSY K V  +PYN
Sbjct: 103 LSKGTTLTTTLYQTTGHALGNLGFVNVTDLKGGKVGFGSAAPGSKLDSSYTKSVKQIPYN 162

Query: 77  IS 79
           IS
Sbjct: 163 IS 164

[Close]
BLAST of CsaV3_1G030240 vs. Swiss-Prot
Match: sp|O22126|FLA8_ARATH (Fasciclin-like arabinogalactan protein 8 OS=Arabidopsis thaliana OX=3702 GN=FLA8 PE=2 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 5.6e-12
Identity = 36/62 (58.06%), Postives = 43/62 (69.35%), Query Frame = 0 

Query: 17  LQRDHSLHYALYQTTSHALGNLYFFNITDLQADKVGFGSVVPGSKLESSYMKWVVSLPYN 76
           + +  +L   LYQTT +A GNL F NITDL+  KVGFGS   GSKL+SSY K V  +PYN
Sbjct: 103 ISKGTTLSTTLYQTTGNAPGNLGFVNITDLKGGKVGFGSAASGSKLDSSYTKSVKQIPYN 162

Query: 77  IS 79
           IS
Sbjct: 163 IS 164

[Close]
BLAST of CsaV3_1G030240 vs. Swiss-Prot
Match: sp|Q9FM65|FLA1_ARATH (Fasciclin-like arabinogalactan protein 1 OS=Arabidopsis thaliana OX=3702 GN=FLA1 PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 2.5e-04
Identity = 26/57 (45.61%), Postives = 33/57 (57.89%), Query Frame = 0 

Query: 22  SLHYALYQTTSHALGNLYFFNITDLQADKVGFGSVVPGSKLESSYMKWVVSLPYNIS 79
           +L   L+Q T  A G   F NITDL+  KVGFG    G  L S ++K +  +PYNIS
Sbjct: 108 ALAATLFQATGAAPGTSGFVNITDLRGGKVGFGP--DGGDLSSFFVKSIEEVPYNIS 162

[Close]
BLAST of CsaV3_1G030240 vs. TrEMBL
Match: tr|A0A0A0KCV6|A0A0A0KCV6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G076800 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 5.8e-14
Identity = 44/57 (77.19%), Postives = 45/57 (78.95%), Query Frame = 0 

Query: 22  SLHYALYQTTSHALGNLYFFNITDLQADKVGFGSVVPGSKLESSYMKWVVSLPYNIS 79
           +L   LYQTT HA GNL F NITDLQ  KVGFGS VPGSKLESSY K VVSLPYNIS
Sbjct: 105 TLSTTLYQTTGHAPGNLGFVNITDLQGGKVGFGSAVPGSKLESSYTKSVVSLPYNIS 161

[Close]
BLAST of CsaV3_1G030240 vs. TrEMBL
Match: tr|A0A1S3CBU5|A0A1S3CBU5_CUCME (fasciclin-like arabinogalactan protein 10 OS=Cucumis melo OX=3656 GN=LOC103499033 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 4.9e-13
Identity = 42/57 (73.68%), Postives = 44/57 (77.19%), Query Frame = 0 

Query: 22  SLHYALYQTTSHALGNLYFFNITDLQADKVGFGSVVPGSKLESSYMKWVVSLPYNIS 79
           +L   LYQTT HA GNL F NITDLQ  KV FGS VPGSKLESSY K VVS+PYNIS
Sbjct: 105 TLSTTLYQTTGHAPGNLGFVNITDLQGGKVAFGSAVPGSKLESSYTKSVVSMPYNIS 161

[Close]
BLAST of CsaV3_1G030240 vs. TrEMBL
Match: tr|A0A178VCZ1|A0A178VCZ1_ARATH (FLA10 OS=Arabidopsis thaliana OX=3702 GN=AXX17_At3g55270 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.2e-12
Identity = 39/62 (62.90%), Postives = 45/62 (72.58%), Query Frame = 0 

Query: 17  LQRDHSLHYALYQTTSHALGNLYFFNITDLQADKVGFGSVVPGSKLESSYMKWVVSLPYN 76
           L +  +L   LYQTT HALGNL F N+TDL+  KVGFGS  PGSKL+SSY K V  +PYN
Sbjct: 103 LSKGTTLTTTLYQTTGHALGNLGFVNVTDLKGGKVGFGSAAPGSKLDSSYTKSVKQIPYN 162

Query: 77  IS 79
           IS
Sbjct: 163 IS 164

[Close]
BLAST of CsaV3_1G030240 vs. TrEMBL
Match: tr|M5X194|M5X194_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G147700 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 5.4e-12
Identity = 39/62 (62.90%), Postives = 44/62 (70.97%), Query Frame = 0 

Query: 17  LQRDHSLHYALYQTTSHALGNLYFFNITDLQADKVGFGSVVPGSKLESSYMKWVVSLPYN 76
           + +  +L   LYQTT HA GNL F NITDLQ  KVGFGS  PGSKL+SSY K V  +PYN
Sbjct: 101 ISKGSTLSTTLYQTTGHAPGNLGFVNITDLQGGKVGFGSAAPGSKLDSSYTKSVKQIPYN 160

Query: 77  IS 79
           IS
Sbjct: 161 IS 162

[Close]
BLAST of CsaV3_1G030240 vs. TrEMBL
Match: tr|A0A1U8NB59|A0A1U8NB59_GOSHI (fasciclin-like arabinogalactan protein 8 OS=Gossypium hirsutum OX=3635 GN=LOC107945624 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 9.2e-12
Identity = 45/78 (57.69%), Postives = 51/78 (65.38%), Query Frame = 0 

Query: 4   RLGLLRSRKTPQDLQR---DHSLHYALYQTTSHALGNLYFFNITDLQADKVGFGSVVPGS 63
           RL +L     PQ L +     +L   LYQTT +A GNL F NITDLQ  KVGFGS VPGS
Sbjct: 87  RLHVLLDYYDPQKLHKISDGTTLTTTLYQTTGNAPGNLGFVNITDLQGGKVGFGSAVPGS 146

Query: 64  KLESSYMKWVVSLPYNIS 79
           KL+SSY K V  +PYNIS
Sbjct: 147 KLDSSYTKSVKQVPYNIS 164

The following BLAST results are available for this feature:
BLAST of CsaV3_1G030240 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004153890.18.7e-1477.19PREDICTED: fasciclin-like arabinogalactan protein 10 [Cucumis sativus] >KGN46232... [more]
XP_008460132.17.4e-1373.68PREDICTED: fasciclin-like arabinogalactan protein 10 [Cucumis melo][more]
NP_191649.14.8e-1262.90FASCICLIN-like arabinogalactan-protein 10 [Arabidopsis thaliana] >Q9LZX4.1 RecNa... [more]
AAK55685.14.8e-1262.90AT3g60900/T4C21_310, partial [Arabidopsis thaliana][more]
OAP04160.14.8e-1262.90FLA10 [Arabidopsis thaliana][more]
BLAST of CsaV3_1G030240 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G60900.18.7e-1662.90FASCICLIN-like arabinogalactan-protein 10[more]
AT2G45470.13.1e-1358.06FASCICLIN-like arabinogalactan protein 8[more]
AT5G55730.11.4e-0545.61FASCICLIN-like arabinogalactan 1[more]
BLAST of CsaV3_1G030240 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9LZX4|FLA10_ARATH1.6e-1462.90Fasciclin-like arabinogalactan protein 10 OS=Arabidopsis thaliana OX=3702 GN=FLA... [more]
sp|O22126|FLA8_ARATH5.6e-1258.06Fasciclin-like arabinogalactan protein 8 OS=Arabidopsis thaliana OX=3702 GN=FLA8... [more]
sp|Q9FM65|FLA1_ARATH2.5e-0445.61Fasciclin-like arabinogalactan protein 1 OS=Arabidopsis thaliana OX=3702 GN=FLA1... [more]
BLAST of CsaV3_1G030240 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KCV6|A0A0A0KCV6_CUCSA5.8e-1477.19Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G076800 PE=4 SV=1[more]
tr|A0A1S3CBU5|A0A1S3CBU5_CUCME4.9e-1373.68fasciclin-like arabinogalactan protein 10 OS=Cucumis melo OX=3656 GN=LOC10349903... [more]
tr|A0A178VCZ1|A0A178VCZ1_ARATH3.2e-1262.90FLA10 OS=Arabidopsis thaliana OX=3702 GN=AXX17_At3g55270 PE=4 SV=1[more]
tr|M5X194|M5X194_PRUPE5.4e-1262.90Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G147700 PE=4 SV=1[more]
tr|A0A1U8NB59|A0A1U8NB59_GOSHI9.2e-1257.69fasciclin-like arabinogalactan protein 8 OS=Gossypium hirsutum OX=3635 GN=LOC107... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR033254Plant_FLA
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G030240.1CsaV3_1G030240.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR32382:SF5FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 10-RELATEDcoord: 17..78
IPR033254Fasciclin-like arabinogalactan proteinPANTHERPTHR32382FAMILY NOT NAMEDcoord: 17..78

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G030240Cucsa.295150Cucumber (Gy14) v1cgycucB455
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G030240Cucumber (Chinese Long) v3cuccucB006
CsaV3_1G030240Cucumber (Chinese Long) v3cuccucB028
CsaV3_1G030240Cucumber (Chinese Long) v3cuccucB061
CsaV3_1G030240Silver-seed gourdcarcucB0041
CsaV3_1G030240Silver-seed gourdcarcucB0143
CsaV3_1G030240Silver-seed gourdcarcucB0285
CsaV3_1G030240Silver-seed gourdcarcucB0602
CsaV3_1G030240Cucumber (Gy14) v2cgybcucB001
CsaV3_1G030240Cucumber (Gy14) v2cgybcucB057
CsaV3_1G030240Cucumber (Gy14) v1cgycucB188
CsaV3_1G030240Cucurbita maxima (Rimu)cmacucB0070
CsaV3_1G030240Cucurbita maxima (Rimu)cmacucB0118
CsaV3_1G030240Cucurbita maxima (Rimu)cmacucB0190
CsaV3_1G030240Cucurbita maxima (Rimu)cmacucB0925
CsaV3_1G030240Cucurbita moschata (Rifu)cmocucB0056
CsaV3_1G030240Cucurbita moschata (Rifu)cmocucB0106
CsaV3_1G030240Cucurbita moschata (Rifu)cmocucB0174
CsaV3_1G030240Cucurbita moschata (Rifu)cmocucB0917
CsaV3_1G030240Cucurbita pepo (Zucchini)cpecucB0102
CsaV3_1G030240Cucurbita pepo (Zucchini)cpecucB0433
CsaV3_1G030240Cucurbita pepo (Zucchini)cpecucB0802
CsaV3_1G030240Cucurbita pepo (Zucchini)cpecucB1000
CsaV3_1G030240Wild cucumber (PI 183967)cpicucB000
CsaV3_1G030240Wild cucumber (PI 183967)cpicucB070
CsaV3_1G030240Wild cucumber (PI 183967)cpicucB200
CsaV3_1G030240Wild cucumber (PI 183967)cpicucB421
CsaV3_1G030240Bottle gourd (USVL1VR-Ls)cuclsiB006
CsaV3_1G030240Bottle gourd (USVL1VR-Ls)cuclsiB070
CsaV3_1G030240Melon (DHL92) v3.5.1cucmeB057
CsaV3_1G030240Melon (DHL92) v3.5.1cucmeB079
CsaV3_1G030240Melon (DHL92) v3.5.1cucmeB088
CsaV3_1G030240Melon (DHL92) v3.6.1cucmedB054
CsaV3_1G030240Melon (DHL92) v3.6.1cucmedB073
CsaV3_1G030240Watermelon (Charleston Gray)cucwcgB076
CsaV3_1G030240Watermelon (Charleston Gray)cucwcgB008
CsaV3_1G030240Watermelon (97103) v1cucwmB086
CsaV3_1G030240Watermelon (97103) v1cucwmB093
CsaV3_1G030240Watermelon (97103) v2cucwmbB018
CsaV3_1G030240Watermelon (97103) v2cucwmbB065
CsaV3_1G030240Watermelon (97103) v2cucwmbB092
CsaV3_1G030240Wax gourdcucwgoB002
CsaV3_1G030240Wax gourdcucwgoB084
CsaV3_1G030240Wax gourdcucwgoB107