CsaV3_1G029590 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G029590
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	60S ribosomal protein L39
Location	chr1 : 16378717 .. 16379583 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGCCAGCCGTCCATCTCTCCGTCCGCTTGCTTCCATTGTCGTCGACGACGTCTACCCACCCCAAAGAACCCTGCACGCGAAGTCAATCTTTTGGAAACCCCGGCCCATCGTTCGAAACGCTCACCTCCATTCGTAAAAACCCATTCGAAACCCCCACCACACCGAAACCCTCTGCCGCCGGCCGTTCACAACTCCGACCGCTTGCTTCCATTGTCGTCGACGACGTCTACCCACCCCAAAGAACCCCCGCGCGCGAAATCAATCTTTTGGAAACCCCGACCCATCTGTTCGAAACGCTCACCTCCATTAGAAAAAACCCATTCGAAACCCCCCACACACACCGAAACCCCTCTGCAACCGGTCGTCCACAACTCCGACCGCTTGCTTCCATTGTCGTCGACGACGTCTACCCACCCCAAAGAACCCCGCGCGCGAAGTCAATCTTTTGGAAGCCCCGGCCCATCCGTTTGAAACGCTCACCTCCATTCGAAAAAACCCATTCGAAACCCCCCACACACATCGAAACCCTCTGCCGCCAGACGTCCACAAATCCGACCGTTTGCTGCCAATGTCGTCGACGACGTCTGCCCACCCCAAAGGACGAGCTGCACGCGAAGTCAATCTTTTGGAAACCCCTGCCCATCCGTTCGAAACGCTCACCTCCATTCGAAAAAATCTATTCGAAACCCCCCACACTCACAGTTCATCGTCGGAACCTGAAAATGTTGTCTCATAAAACTTTTATAATGAAGAAGAAGTTCGCGAAGAAGAAGAGGCAGAATAGGCCGACCCCGCACTGGATCCGCCTGAGAATTGACAACACGAGGCAAAGTGCGCAACGTCGCACAAAGCTAGGGTTCTAA

mRNA sequence

ATGCTGCCAGCCGTCCATCTCTCCGTCCGCTTGCTTCCATTGTCGTCGACGACGTCTACCCACCCCAAAGAACCCTGCACGCGAAGTCAATCTTTTGGAAACCCCGGCCCATCGTTCGAAACGCTCACCTCCATTCGTAAAAACCCATTCGAAACCCCCACCACACCGAAACCCTCTGCCGCCGGCCGTTCACAACTCCGACCGCTTGCTTCCATTGTCGTCGACGACGTCTACCCACCCCAAAGAACCCCCGCGCGCGAAATCAATCTTTTGGAAACCCCGACCCATCTGTTCGAAACGCTCACCTCCATTAGAAAAAACCCATTCGAAACCCCCCACACACACCGAAACCCCTCTGCAACCGGTCGTCCACAACTCCGACCGCTTGCTTCCATTGTCGTCGACGACGTCTACCCACCCCAAAGAACCCCGCGCGCGAAGTCAATCTTTTGGAAGCCCCGGCCCATCCGTTTGAAACGCTCACCTCCATTCGAAAAAACCCATTCGAAACCCCCCACACACATCGAAACCCTCTGCCGCCAGACGTCCACAAATCCGACCGTTTGCTGCCAATGTCGTCGACGACGTCTGCCCACCCCAAAGGACGAGCTGCACGCGAAGTCAATCTTTTGGAAACCCCTGCCCATCCGTTCGAAACGCTCACCTCCATTCGAAAAAATCTATTCGAAACCCCCCACACTCACAGTTCATCGTCGGAACCTGAAAATGTTGTCTCATAAAACTTTTATAATGAAGAAGAAGTTCGCGAAGAAGAAGAGGCAGAATAGGCCGACCCCGCACTGGATCCGCCTGAGAATTGACAACACGAGGCAAAGTGCGCAACGTCGCACAAAGCTAGGGTTCTAA

Coding sequence (CDS)

ATGCTGCCAGCCGTCCATCTCTCCGTCCGCTTGCTTCCATTGTCGTCGACGACGTCTACCCACCCCAAAGAACCCTGCACGCGAAGTCAATCTTTTGGAAACCCCGGCCCATCGTTCGAAACGCTCACCTCCATTCGTAAAAACCCATTCGAAACCCCCACCACACCGAAACCCTCTGCCGCCGGCCGTTCACAACTCCGACCGCTTGCTTCCATTGTCGTCGACGACGTCTACCCACCCCAAAGAACCCCCGCGCGCGAAATCAATCTTTTGGAAACCCCGACCCATCTGTTCGAAACGCTCACCTCCATTAGAAAAAACCCATTCGAAACCCCCCACACACACCGAAACCCCTCTGCAACCGGTCGTCCACAACTCCGACCGCTTGCTTCCATTGTCGTCGACGACGTCTACCCACCCCAAAGAACCCCGCGCGCGAAGTCAATCTTTTGGAAGCCCCGGCCCATCCGTTTGAAACGCTCACCTCCATTCGAAAAAACCCATTCGAAACCCCCCACACACATCGAAACCCTCTGCCGCCAGACGTCCACAAATCCGACCGTTTGCTGCCAATGTCGTCGACGACGTCTGCCCACCCCAAAGGACGAGCTGCACGCGAAGTCAATCTTTTGGAAACCCCTGCCCATCCGTTCGAAACGCTCACCTCCATTCGAAAAAATCTATTCGAAACCCCCCACACTCACAGTTCATCGTCGGAACCTGAAAATGTTGTCTCATAAAACTTTTATAATGAAGAAGAAGTTCGCGAAGAAGAAGAGGCAGAATAGGCCGACCCCGCACTGGATCCGCCTGAGAATTGACAACACGAGGCAAAGTGCGCAACGTCGCACAAAGCTAGGGTTCTAA

Protein sequence

MLPAVHLSVRLLPLSSTTSTHPKEPCTRSQSFGNPGPSFETLTSIRKNPFETPTTPKPSAAGRSQLRPLASIVVDDVYPPQRTPAREINLLETPTHLFETLTSIRKNPFETPHTHRNPSATGRPQLRPLASIVVDDVYPPQRTPRAKSIFWKPRPIRLKRSPPFEKTHSKPPTHIETLCRQTSTNPTVCCQCRRRRLPTPKDELHAKSIFWKPLPIRSKRSPPFEKIYSKPPTLTVHRRNLKMLSHKTFIMKKKFAKKKRQNRPTPHWIRLRIDNTRQSAQRRTKLGF

Homology

[Close]

BLAST of CsaV3_1G029590 vs. NCBI nr
Match: KGN65289.1 (hypothetical protein Csa_1G298170 [Cucumis sativus])

HSP 1 Score: 289.3 bits (739), Expect = 1.5e-74
Identity = 156/188 (82.98%), Postives = 158/188 (84.04%), Query Frame = 0


Query: 1   MLPAVHLSVRLLPLSSTTSTHPKEPCTRSQSFGNPGPSFETLTSIRKNPFETPTTPKPSA 60
           MLPAVHLSVRLLPLSSTTSTHPKEPCTRSQSFGNPGPSFETLTSIRKNPFETPTTPKPSA
Sbjct: 1   MLPAVHLSVRLLPLSSTTSTHPKEPCTRSQSFGNPGPSFETLTSIRKNPFETPTTPKPSA 60

Query: 61  AGRSQLRPLASIVVDDVYPPQRTPAREINLLETPTHLFETLTSIRKNPFETPHTHRNPSA 120
           AGRSQLRPLASIVVDDVYPPQRTPAREINLLETPTHLFETLTSIRKNPFETPHTHRNPSA
Sbjct: 61  AGRSQLRPLASIVVDDVYPPQRTPAREINLLETPTHLFETLTSIRKNPFETPHTHRNPSA 120

Query: 121 TGRPQLRPLASIVVDDVYPPQRTPRAKSIFWKPRPIRLKRSP--PFEKTHSKPPTHIETL 180
           TGRPQLRPLASIVVDDVYPPQRTP         R + L  +P  PFE   S      ET 
Sbjct: 121 TGRPQLRPLASIVVDDVYPPQRTP--------AREVNLLEAPAHPFETLTSIRKNPFET- 178

Query: 181 CRQTSTNP 187
              T  NP
Sbjct: 181 -PHTHRNP 178

[Close]

BLAST of CsaV3_1G029590 vs. NCBI nr
Match: XP_011656152.1 (PREDICTED: 60S ribosomal protein L39-1-like [Cucumis sativus])

HSP 1 Score: 95.5 bits (236), Expect = 3.1e-16
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 243 MLSHKTFIMKKKFAKKKRQNRPTPHWIRLRIDNTRQSAQRRTKLGF 289
           MLSHKTFIMKKKFAKKKRQNRPTPHWIRLRIDNTRQSAQRRTKLGF
Sbjct: 1   MLSHKTFIMKKKFAKKKRQNRPTPHWIRLRIDNTRQSAQRRTKLGF 46

[Close]

BLAST of CsaV3_1G029590 vs. NCBI nr
Match: XP_011657167.1 (PREDICTED: 60S ribosomal protein L39-like [Cucumis sativus])

HSP 1 Score: 80.1 bits (196), Expect = 1.4e-11
Identity = 41/49 (83.67%), Postives = 42/49 (85.71%), Query Frame = 0


Query: 243 MLSHKTFIMKKKFAKKKRQNRPTPHWIRLRIDN---TRQSAQRRTKLGF 289
           MLSHKTF MKKK  KKKRQNRPTPHWIRLR DN   TR+SAQRRTKLGF
Sbjct: 1   MLSHKTFRMKKKLLKKKRQNRPTPHWIRLRTDNTIDTRESAQRRTKLGF 49

[Close]

BLAST of CsaV3_1G029590 vs. NCBI nr
Match: XP_011657256.1 (PREDICTED: 60S ribosomal protein L39-like [Cucumis sativus])

HSP 1 Score: 77.4 bits (189), Expect = 8.8e-11
Identity = 41/49 (83.67%), Postives = 42/49 (85.71%), Query Frame = 0


Query: 243 MLSHKTFIMKKKFAKKKRQNRPTPHWIRLRIDN---TRQSAQRRTKLGF 289
           MLSHKTF MKKK AKKKRQNRPT +WIRLR DN   TRQSAQRRTKLGF
Sbjct: 1   MLSHKTFRMKKKLAKKKRQNRPTSNWIRLRTDNTIDTRQSAQRRTKLGF 49

[Close]

BLAST of CsaV3_1G029590 vs. NCBI nr
Match: CDP02331.1 (unnamed protein product [Coffea canephora])

HSP 1 Score: 70.1 bits (170), Expect = 1.4e-08
Identity = 38/63 (60.32%), Postives = 48/63 (76.19%), Query Frame = 0


Query: 231 PPTLTVHRRNLKMLSHKTFIMKKKFAKKKRQNRPTPHWIRLRIDNT-RQSAQ----RRTK 289
           PP L+ + +  KM SHKTF++KKK AKK+RQNRP P+WIR+R DNT R +A+    RRTK
Sbjct: 20  PPVLSFNLQQPKMPSHKTFMIKKKLAKKQRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTK 79

[Close]

BLAST of CsaV3_1G029590 vs. TAIR10
Match: AT4G31985.1 (Ribosomal protein L39 family protein)

HSP 1 Score: 62.8 bits (151), Expect = 4.1e-10
Identity = 34/51 (66.67%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 243 MLSHKTFIMKKKFAKKKRQNRPTPHWIRLRIDNT-RQSAQ----RRTKLGF 289
           M SHK+F++KKK  KK RQNRP PHWIRLR DNT R +A+    RRTKLGF
Sbjct: 1   MPSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of CsaV3_1G029590 vs. TAIR10
Match: AT3G02190.1 (Ribosomal protein L39 family protein)

HSP 1 Score: 57.8 bits (138), Expect = 1.3e-08
Identity = 30/51 (58.82%), Postives = 36/51 (70.59%), Query Frame = 0


Query: 243 MLSHKTFIMKKKFAKKKRQNRPTPHWIRLRID-----NTRQSAQRRTKLGF 289
           M SHK+F++KKK  KK RQNRP P+WIRLR D     N ++   RRTKLGF
Sbjct: 1   MPSHKSFMIKKKLGKKMRQNRPIPNWIRLRTDNKIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of CsaV3_1G029590 vs. TAIR10
Match: AT2G25210.1 (Ribosomal protein L39 family protein)

HSP 1 Score: 53.1 bits (126), Expect = 3.2e-07
Identity = 29/44 (65.91%), Postives = 33/44 (75.00%), Query Frame = 0


Query: 250 IMKKKFAKKKRQNRPTPHWIRLRIDNT-RQSAQ----RRTKLGF 289
           ++KKK  KK RQNRP PHWIRLR DNT R +A+    RRTKLGF
Sbjct: 1   MIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 44

[Close]

BLAST of CsaV3_1G029590 vs. Swiss-Prot
Match: sp|P51424|RL391_ARATH (60S ribosomal protein L39-1 OS=Arabidopsis thaliana OX=3702 GN=RPL39A PE=3 SV=2)

HSP 1 Score: 62.8 bits (151), Expect = 7.3e-09
Identity = 34/51 (66.67%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 243 MLSHKTFIMKKKFAKKKRQNRPTPHWIRLRIDNT-RQSAQ----RRTKLGF 289
           M SHK+F++KKK  KK RQNRP PHWIRLR DNT R +A+    RRTKLGF
Sbjct: 1   MPSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of CsaV3_1G029590 vs. Swiss-Prot
Match: sp|Q6KAJ8|RL391_ORYSJ (60S ribosomal protein L39-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39A PE=3 SV=2)

HSP 1 Score: 61.2 bits (147), Expect = 2.1e-08
Identity = 34/51 (66.67%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 243 MLSHKTFIMKKKFAKKKRQNRPTPHWIRLRIDNT-RQSAQ----RRTKLGF 289
           M SHKTF +KKK AKK RQNRP P+WIR+R DNT R +A+    RRTKLGF
Sbjct: 1   MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of CsaV3_1G029590 vs. Swiss-Prot
Match: sp|P51426|RL392_ORYSJ (60S ribosomal protein L39-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39B PE=3 SV=2)

HSP 1 Score: 61.2 bits (147), Expect = 2.1e-08
Identity = 34/51 (66.67%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 243 MLSHKTFIMKKKFAKKKRQNRPTPHWIRLRIDNT-RQSAQ----RRTKLGF 289
           M SHKTF +KKK AKK RQNRP P+WIR+R DNT R +A+    RRTKLGF
Sbjct: 1   MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of CsaV3_1G029590 vs. Swiss-Prot
Match: sp|Q5SMI4|RL393_ORYSJ (60S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39C PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.1e-08
Identity = 34/51 (66.67%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 243 MLSHKTFIMKKKFAKKKRQNRPTPHWIRLRIDNT-RQSAQ----RRTKLGF 289
           M SHKTF +KKK AKK RQNRP P+WIR+R DNT R +A+    RRTKLGF
Sbjct: 1   MPSHKTFQIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of CsaV3_1G029590 vs. Swiss-Prot
Match: sp|P51425|RL39_MAIZE (60S ribosomal protein L39 OS=Zea mays OX=4577 GN=RPL39 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.1e-08
Identity = 34/51 (66.67%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 243 MLSHKTFIMKKKFAKKKRQNRPTPHWIRLRIDNT-RQSAQ----RRTKLGF 289
           M SHKTF +KKK AKK RQNRP P+WIR+R DNT R +A+    RRTKLGF
Sbjct: 1   MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of CsaV3_1G029590 vs. TrEMBL
Match: tr|A0A0A0LWC3|A0A0A0LWC3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G298170 PE=4 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 9.8e-75
Identity = 156/188 (82.98%), Postives = 158/188 (84.04%), Query Frame = 0


Query: 1   MLPAVHLSVRLLPLSSTTSTHPKEPCTRSQSFGNPGPSFETLTSIRKNPFETPTTPKPSA 60
           MLPAVHLSVRLLPLSSTTSTHPKEPCTRSQSFGNPGPSFETLTSIRKNPFETPTTPKPSA
Sbjct: 1   MLPAVHLSVRLLPLSSTTSTHPKEPCTRSQSFGNPGPSFETLTSIRKNPFETPTTPKPSA 60

Query: 61  AGRSQLRPLASIVVDDVYPPQRTPAREINLLETPTHLFETLTSIRKNPFETPHTHRNPSA 120
           AGRSQLRPLASIVVDDVYPPQRTPAREINLLETPTHLFETLTSIRKNPFETPHTHRNPSA
Sbjct: 61  AGRSQLRPLASIVVDDVYPPQRTPAREINLLETPTHLFETLTSIRKNPFETPHTHRNPSA 120

Query: 121 TGRPQLRPLASIVVDDVYPPQRTPRAKSIFWKPRPIRLKRSP--PFEKTHSKPPTHIETL 180
           TGRPQLRPLASIVVDDVYPPQRTP         R + L  +P  PFE   S      ET 
Sbjct: 121 TGRPQLRPLASIVVDDVYPPQRTP--------AREVNLLEAPAHPFETLTSIRKNPFET- 178

Query: 181 CRQTSTNP 187
              T  NP
Sbjct: 181 -PHTHRNP 178

[Close]

BLAST of CsaV3_1G029590 vs. TrEMBL
Match: tr|A0A068U1E6|A0A068U1E6_COFCA (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00039692001 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 9.3e-09
Identity = 38/63 (60.32%), Postives = 48/63 (76.19%), Query Frame = 0


Query: 231 PPTLTVHRRNLKMLSHKTFIMKKKFAKKKRQNRPTPHWIRLRIDNT-RQSAQ----RRTK 289
           PP L+ + +  KM SHKTF++KKK AKK+RQNRP P+WIR+R DNT R +A+    RRTK
Sbjct: 20  PPVLSFNLQQPKMPSHKTFMIKKKLAKKQRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTK 79

[Close]

BLAST of CsaV3_1G029590 vs. TrEMBL
Match: tr|B9SC04|B9SC04_RICCO (Ribosomal protein L39e, putative OS=Ricinus communis OX=3988 GN=RCOM_0701310 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 4.6e-08
Identity = 37/52 (71.15%), Postives = 41/52 (78.85%), Query Frame = 0


Query: 242 KMLSHKTFIMKKKFAKKKRQNRPTPHWIRLRIDNT-RQSAQ----RRTKLGF 289
           KM SHKTFI+KKK AKK RQNRP PHWIR+R DNT R +A+    RRTKLGF
Sbjct: 16  KMPSHKTFIIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 67

[Close]

BLAST of CsaV3_1G029590 vs. TrEMBL
Match: tr|A0A251RA49|A0A251RA49_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G390600 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 7.9e-08
Identity = 37/51 (72.55%), Postives = 40/51 (78.43%), Query Frame = 0


Query: 243 MLSHKTFIMKKKFAKKKRQNRPTPHWIRLRIDNT-RQSAQ----RRTKLGF 289
           M SHKTFI+KKK AKK RQNRP PHWIRLR DNT R +A+    RRTKLGF
Sbjct: 1   MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of CsaV3_1G029590 vs. TrEMBL
Match: tr|A0A2P4MUS4|A0A2P4MUS4_QUESU (60s ribosomal protein l39-1 OS=Quercus suber OX=58331 GN=CFP56_53506 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 7.9e-08
Identity = 36/59 (61.02%), Postives = 45/59 (76.27%), Query Frame = 0


Query: 235 TVHRRNLKMLSHKTFIMKKKFAKKKRQNRPTPHWIRLRIDNT-RQSAQ----RRTKLGF 289
           ++ ++  KM SHKTF++KKK AKK RQNRP PHWIR+R DNT R +A+    RRTKLGF
Sbjct: 60  SLSQQRAKMPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 118

The following BLAST results are available for this feature:

BLAST of CsaV3_1G029590 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65289.1	1.5e-74	82.98	hypothetical protein Csa_1G298170 [Cucumis sativus]	[more]
XP_011656152.1	3.1e-16	100.00	PREDICTED: 60S ribosomal protein L39-1-like [Cucumis sativus]	[more]
XP_011657167.1	1.4e-11	83.67	PREDICTED: 60S ribosomal protein L39-like [Cucumis sativus]	[more]
XP_011657256.1	8.8e-11	83.67	PREDICTED: 60S ribosomal protein L39-like [Cucumis sativus]	[more]
CDP02331.1	1.4e-08	60.32	unnamed protein product [Coffea canephora]	[more]

BLAST of CsaV3_1G029590 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G31985.1	4.1e-10	66.67	Ribosomal protein L39 family protein	[more]
AT3G02190.1	1.3e-08	58.82	Ribosomal protein L39 family protein	[more]
AT2G25210.1	3.2e-07	65.91	Ribosomal protein L39 family protein	[more]

BLAST of CsaV3_1G029590 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P51424\|RL391_ARATH	7.3e-09	66.67	60S ribosomal protein L39-1 OS=Arabidopsis thaliana OX=3702 GN=RPL39A PE=3 SV=2	[more]
sp\|Q6KAJ8\|RL391_ORYSJ	2.1e-08	66.67	60S ribosomal protein L39-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39A P...	[more]
sp\|P51426\|RL392_ORYSJ	2.1e-08	66.67	60S ribosomal protein L39-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39B P...	[more]
sp\|Q5SMI4\|RL393_ORYSJ	2.1e-08	66.67	60S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39C P...	[more]
sp\|P51425\|RL39_MAIZE	2.1e-08	66.67	60S ribosomal protein L39 OS=Zea mays OX=4577 GN=RPL39 PE=3 SV=1	[more]

BLAST of CsaV3_1G029590 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LWC3\|A0A0A0LWC3_CUCSA	9.8e-75	82.98	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G298170 PE=4 SV=1	[more]
tr\|A0A068U1E6\|A0A068U1E6_COFCA	9.3e-09	60.32	Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00039692001 PE=3 ...	[more]
tr\|B9SC04\|B9SC04_RICCO	4.6e-08	71.15	Ribosomal protein L39e, putative OS=Ricinus communis OX=3988 GN=RCOM_0701310 PE=...	[more]
tr\|A0A251RA49\|A0A251RA49_PRUPE	7.9e-08	72.55	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G390600 PE=3 SV=1	[more]
tr\|A0A2P4MUS4\|A0A2P4MUS4_QUESU	7.9e-08	61.02	60s ribosomal protein l39-1 OS=Quercus suber OX=58331 GN=CFP56_53506 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR000077	Ribosomal_L39
IPR023626	Ribosomal_L39e_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0008150	biological_process
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G029590.1	CsaV3_1G029590.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023626	Ribosomal protein L39e domain superfamily	GENE3D	G3DSA:1.10.1620.10		coord: 243..288 e-value: 7.4E-14 score: 53.3
IPR023626	Ribosomal protein L39e domain superfamily	SUPERFAMILY	SSF48662	Ribosomal protein L39e	coord: 245..282
IPR000077	Ribosomal protein L39e	PFAM	PF00832	Ribosomal_L39	coord: 251..283 e-value: 9.8E-6 score: 25.0
IPR000077	Ribosomal protein L39e	PANTHER	PTHR19970	RIBOSOMAL PROTEIN L39E	coord: 237..288
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..61
None	No IPR available	PANTHER	PTHR19970:SF13	SUBFAMILY NOT NAMED	coord: 237..288
None	No IPR available	PRODOM	PD007914		coord: 245..276 e-value: 4.0E-4 score: 105.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G029590	CsGy1G018450	Cucumber (Gy14) v2	cgybcucB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G029590	Cucumber (Chinese Long) v3	cuccucB008
CsaV3_1G029590	Cucumber (Gy14) v2	cgybcucB058
CsaV3_1G029590	Cucumber (Gy14) v1	cgycucB096
CsaV3_1G029590	Wild cucumber (PI 183967)	cpicucB000
CsaV3_1G029590	Wild cucumber (PI 183967)	cpicucB072
CsaV3_1G029590	Bottle gourd (USVL1VR-Ls)	cuclsiB008
CsaV3_1G029590	Melon (DHL92) v3.5.1	cucmeB081
CsaV3_1G029590	Melon (DHL92) v3.6.1	cucmedB075
CsaV3_1G029590	Watermelon (Charleston Gray)	cucwcgB013
CsaV3_1G029590	Watermelon (97103) v1	cucwmB089
CsaV3_1G029590	Watermelon (97103) v2	cucwmbB023
CsaV3_1G029590	Wax gourd	cucwgoB006