CsaV3_1G029570 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G029570
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptionglutamate receptor 2.8-like isoform X2
Locationchr1 : 16356471 .. 16356656 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGTGGAGAAAGTGAATCAGTCCACTATCCCTGCAACTGCGATCATGAAGATAAAGCTTCGGGATGTAATTCGGAATACAAATTTCGAAGGCATCTGTGGAGATTTCGATTTGGTTGATGGAGAACTAAAAAACGACCAACTTTTGAAGTGTTCAATGTGTTGGCTGAGAAGGAGATTGTAA

mRNA sequence

ATGGCTGTGGAGAAAGTGAATCAGTCCACTATCCCTGCAACTGCGATCATGAAGATAAAGCTTCGGGATGTAATTCGGAATACAAATTTCGAAGGCATCTGTGGAGATTTCGATTTGGTTGATGGAGAACTAAAAAACGACCAACTTTTGAAGTGTTCAATGTGTTGGCTGAGAAGGAGATTGTAA

Coding sequence (CDS)

ATGGCTGTGGAGAAAGTGAATCAGTCCACTATCCCTGCAACTGCGATCATGAAGATAAAGCTTCGGGATGTAATTCGGAATACAAATTTCGAAGGCATCTGTGGAGATTTCGATTTGGTTGATGGAGAACTAAAAAACGACCAACTTTTGAAGTGTTCAATGTGTTGGCTGAGAAGGAGATTGTAA

Protein sequence

MAVEKVNQSTIPATAIMKIKLRDVIRNTNFEGICGDFDLVDGELKNDQLLKCSMCWLRRRL
Homology
[Close]
BLAST of CsaV3_1G029570 vs. NCBI nr
Match: XP_008453654.1 (PREDICTED: glutamate receptor 2.7-like [Cucumis melo])

HSP 1 Score: 58.9 bits (141), Expect = 7.0e-06
Identity = 32/45 (71.11%), Postives = 35/45 (77.78%), Query Frame = 0 

Query: 1  MAVEKVNQSTIPATAIMKIKLRDVIRNTNFEGICGDFDLVDGELK 46
          MAVEKVN+STIP +A  K +LRD I  T FEGI GDF LVDGELK
Sbjct: 56 MAVEKVNRSTIPGSA-TKSELRDAIVKTKFEGISGDFFLVDGELK 99

[Close]
BLAST of CsaV3_1G029570 vs. NCBI nr
Match: XP_016901395.1 (PREDICTED: glutamate receptor 2.8-like isoform X1 [Cucumis melo])

HSP 1 Score: 57.0 bits (136), Expect = 2.6e-05
Identity = 31/45 (68.89%), Postives = 34/45 (75.56%), Query Frame = 0 

Query: 1  MAVEKVNQSTIPATAIMKIKLRDVIRNTNFEGICGDFDLVDGELK 46
          MAVEKVN+ TIP +A  K +LRD I  T FEGI GDF LVDGELK
Sbjct: 1  MAVEKVNRPTIPGSA-TKSELRDAIVKTKFEGISGDFFLVDGELK 44

[Close]
BLAST of CsaV3_1G029570 vs. NCBI nr
Match: XP_016901396.1 (PREDICTED: glutamate receptor 2.8-like isoform X2 [Cucumis melo])

HSP 1 Score: 57.0 bits (136), Expect = 2.6e-05
Identity = 31/45 (68.89%), Postives = 34/45 (75.56%), Query Frame = 0 

Query: 1  MAVEKVNQSTIPATAIMKIKLRDVIRNTNFEGICGDFDLVDGELK 46
          MAVEKVN+ TIP +A  K +LRD I  T FEGI GDF LVDGELK
Sbjct: 1  MAVEKVNRPTIPGSA-TKSELRDAIVKTKFEGISGDFFLVDGELK 44

[Close]
BLAST of CsaV3_1G029570 vs. TrEMBL
Match: tr|A0A1S3BXK3|A0A1S3BXK3_CUCME (glutamate receptor 2.7-like OS=Cucumis melo OX=3656 GN=LOC103494306 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.6e-06
Identity = 32/45 (71.11%), Postives = 35/45 (77.78%), Query Frame = 0 

Query: 1  MAVEKVNQSTIPATAIMKIKLRDVIRNTNFEGICGDFDLVDGELK 46
          MAVEKVN+STIP +A  K +LRD I  T FEGI GDF LVDGELK
Sbjct: 56 MAVEKVNRSTIPGSA-TKSELRDAIVKTKFEGISGDFFLVDGELK 99

[Close]
BLAST of CsaV3_1G029570 vs. TrEMBL
Match: tr|A0A1S4DZK1|A0A1S4DZK1_CUCME (glutamate receptor 2.8-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494308 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.7e-05
Identity = 31/45 (68.89%), Postives = 34/45 (75.56%), Query Frame = 0 

Query: 1  MAVEKVNQSTIPATAIMKIKLRDVIRNTNFEGICGDFDLVDGELK 46
          MAVEKVN+ TIP +A  K +LRD I  T FEGI GDF LVDGELK
Sbjct: 1  MAVEKVNRPTIPGSA-TKSELRDAIVKTKFEGISGDFFLVDGELK 44

[Close]
BLAST of CsaV3_1G029570 vs. TrEMBL
Match: tr|A0A1S4E089|A0A1S4E089_CUCME (glutamate receptor 2.8-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494308 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.7e-05
Identity = 31/45 (68.89%), Postives = 34/45 (75.56%), Query Frame = 0 

Query: 1  MAVEKVNQSTIPATAIMKIKLRDVIRNTNFEGICGDFDLVDGELK 46
          MAVEKVN+ TIP +A  K +LRD I  T FEGI GDF LVDGELK
Sbjct: 1  MAVEKVNRPTIPGSA-TKSELRDAIVKTKFEGISGDFFLVDGELK 44

The following BLAST results are available for this feature:
BLAST of CsaV3_1G029570 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008453654.17.0e-0671.11PREDICTED: glutamate receptor 2.7-like [Cucumis melo][more]
XP_016901395.12.6e-0568.89PREDICTED: glutamate receptor 2.8-like isoform X1 [Cucumis melo][more]
XP_016901396.12.6e-0568.89PREDICTED: glutamate receptor 2.8-like isoform X2 [Cucumis melo][more]
BLAST of CsaV3_1G029570 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G029570 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G029570 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BXK3|A0A1S3BXK3_CUCME4.6e-0671.11glutamate receptor 2.7-like OS=Cucumis melo OX=3656 GN=LOC103494306 PE=3 SV=1[more]
tr|A0A1S4DZK1|A0A1S4DZK1_CUCME1.7e-0568.89glutamate receptor 2.8-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494308 P... [more]
tr|A0A1S4E089|A0A1S4E089_CUCME1.7e-0568.89glutamate receptor 2.8-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494308 P... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G029570.1CsaV3_1G029570.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G029570Cucumber (Chinese Long) v3cuccucB008
CsaV3_1G029570Cucumber (Gy14) v2cgybcucB001
CsaV3_1G029570Cucumber (Gy14) v2cgybcucB058
CsaV3_1G029570Cucumber (Gy14) v1cgycucB096
CsaV3_1G029570Wild cucumber (PI 183967)cpicucB000
CsaV3_1G029570Wild cucumber (PI 183967)cpicucB072
CsaV3_1G029570Bottle gourd (USVL1VR-Ls)cuclsiB008
CsaV3_1G029570Melon (DHL92) v3.5.1cucmeB081
CsaV3_1G029570Melon (DHL92) v3.6.1cucmedB075
CsaV3_1G029570Watermelon (Charleston Gray)cucwcgB013
CsaV3_1G029570Watermelon (97103) v1cucwmB089
CsaV3_1G029570Watermelon (97103) v1cucwmB091
CsaV3_1G029570Watermelon (97103) v2cucwmbB023
CsaV3_1G029570Wax gourdcucwgoB006