CsaV3_1G029160 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G029160
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 15970181 .. 15971018 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAACAGTTGTTTGTGTCCTCAAGTCTACCAGCCCCCAGATACAGCCAATGTTCACTATGCCCCGACTCTTGCTCACAATGTATATTGGTAAGCTTTCGTTGTTCCCATCCATGCCATGCTCATCTTATCAAATGTTTATATATATATATATATTTTATTTCTGCCTCATACTGTAAATCTAGGTCACACACCCTTATTAAAAATATACGTTTAAAATTGTACATCATTTTCATACTAGAAGAAAAATTCAAAGCAAACTAGTTGATGGATTTGTATGCTTAAAAAGTTAATTTGATGTGTTTCATGCAAAATTTATTATTTTAGTCATGTATATGTTATTTTTAGTTTACTAAAACAAGTGTTCTATGCATGTCTAAGATATTTGTTGCTCTAAGAAGTGTCCAATGTATGTCCCACAAGCGTTGAAGTGTCCAAGTCTCTAACATGTACATGTAAGGCAAACTAAAGTGTATGTTCCTCTTAGAATATGAGTGACATTTTTTAACACACTTTGCTAGGGTAGAGGCTATAATGAATAGGGTATATGTCAATGCAAACTGCATACAGTTCGTAACAATCATAAAAATATTAACATTCAGCTAGCTGTAGCTGGAACGTCTGCTGGATCAATACGTTTGGTCCAGTGCATAGGATTTGAGAAGAAAGAATAGAAAAACACAGCAACATTGAGAACAGAGTATTGTTGTTGTTGCGCTAATAATGGCCTTGTTTTTTCTTCTTCTGTTGTCTGTAGCGTAGAGGAAACATCAGAGACTGTTTTGTTACTGAGAAAATCCATGGTTTCCTTACAATGCTGCTGCTTGTTGCAAAGTAA

mRNA sequence

ATGAAACAGTTGTTTGTGTCCTCAAGTCTACCAGCCCCCAGATACAGCCAATGTTCACTATGCCCCGACTCTTGCTCACAATGTATATTGCGTAGAGGAAACATCAGAGACTGTTTTGTTACTGAGAAAATCCATGGTTTCCTTACAATGCTGCTGCTTGTTGCAAAGTAA

Coding sequence (CDS)

ATGAAACAGTTGTTTGTGTCCTCAAGTCTACCAGCCCCCAGATACAGCCAATGTTCACTATGCCCCGACTCTTGCTCACAATGTATATTGCGTAGAGGAAACATCAGAGACTGTTTTGTTACTGAGAAAATCCATGGTTTCCTTACAATGCTGCTGCTTGTTGCAAAGTAA

Protein sequence

MKQLFVSSSLPAPRYSQCSLCPDSCSQCILRRGNIRDCFVTEKIHGFLTMLLLVAK
Homology
[Close]
BLAST of CsaV3_1G029160 vs. NCBI nr
Match: KGN65182.1 (hypothetical protein Csa_1G257880 [Cucumis sativus])

HSP 1 Score: 118.6 bits (296), Expect = 6.8e-24
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0 

Query: 1  MKQLFVSSSLPAPRYSQCSLCPDSCSQCILRRGNIRDCFVTEKIHGFLTMLLLVAK 57
          MKQLFVSSSLPAPRYSQCSLCPDSCSQCILRRGNIRDCFVTEKIHGFLTMLLLVAK
Sbjct: 1  MKQLFVSSSLPAPRYSQCSLCPDSCSQCILRRGNIRDCFVTEKIHGFLTMLLLVAK 56

[Close]
BLAST of CsaV3_1G029160 vs. TrEMBL
Match: tr|A0A0A0LWH1|A0A0A0LWH1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G257880 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 4.5e-24
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0 

Query: 1  MKQLFVSSSLPAPRYSQCSLCPDSCSQCILRRGNIRDCFVTEKIHGFLTMLLLVAK 57
          MKQLFVSSSLPAPRYSQCSLCPDSCSQCILRRGNIRDCFVTEKIHGFLTMLLLVAK
Sbjct: 1  MKQLFVSSSLPAPRYSQCSLCPDSCSQCILRRGNIRDCFVTEKIHGFLTMLLLVAK 56

The following BLAST results are available for this feature:
BLAST of CsaV3_1G029160 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN65182.16.8e-24100.00hypothetical protein Csa_1G257880 [Cucumis sativus][more]
BLAST of CsaV3_1G029160 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G029160 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G029160 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LWH1|A0A0A0LWH1_CUCSA4.5e-24100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G257880 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G029160.1CsaV3_1G029160.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G029160Cucumber (Chinese Long) v3cuccucB008
CsaV3_1G029160Silver-seed gourdcarcucB0142
CsaV3_1G029160Silver-seed gourdcarcucB0537
CsaV3_1G029160Silver-seed gourdcarcucB0951
CsaV3_1G029160Cucumber (Gy14) v2cgybcucB001
CsaV3_1G029160Cucumber (Gy14) v2cgybcucB058
CsaV3_1G029160Cucumber (Gy14) v1cgycucB096
CsaV3_1G029160Cucumber (Gy14) v1cgycucB273
CsaV3_1G029160Cucurbita maxima (Rimu)cmacucB0067
CsaV3_1G029160Cucurbita maxima (Rimu)cmacucB0111
CsaV3_1G029160Cucurbita maxima (Rimu)cmacucB0191
CsaV3_1G029160Cucurbita moschata (Rifu)cmocucB0054
CsaV3_1G029160Cucurbita moschata (Rifu)cmocucB0100
CsaV3_1G029160Cucurbita moschata (Rifu)cmocucB0175
CsaV3_1G029160Cucurbita pepo (Zucchini)cpecucB0429
CsaV3_1G029160Cucurbita pepo (Zucchini)cpecucB0796
CsaV3_1G029160Wild cucumber (PI 183967)cpicucB000
CsaV3_1G029160Wild cucumber (PI 183967)cpicucB072
CsaV3_1G029160Bottle gourd (USVL1VR-Ls)cuclsiB008
CsaV3_1G029160Bottle gourd (USVL1VR-Ls)cuclsiB074
CsaV3_1G029160Melon (DHL92) v3.5.1cucmeB054
CsaV3_1G029160Melon (DHL92) v3.5.1cucmeB081
CsaV3_1G029160Melon (DHL92) v3.6.1cucmedB052
CsaV3_1G029160Melon (DHL92) v3.6.1cucmedB075
CsaV3_1G029160Watermelon (Charleston Gray)cucwcgB074
CsaV3_1G029160Watermelon (97103) v1cucwmB091
CsaV3_1G029160Watermelon (97103) v2cucwmbB062
CsaV3_1G029160Watermelon (97103) v2cucwmbB063
CsaV3_1G029160Wax gourdcucwgoB006
CsaV3_1G029160Wax gourdcucwgoB104