CsaV3_1G028930 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G028930
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 15842628 .. 15843064 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTTGAGAGAGAGAGTCAACTTTTTGAAATCCAACCGCTCCATACTCTTTATTAATTCATCTTCTTCACCAAATCCAATAAATTTAAAATCCCATCTTCTTTTTCCGCCATTCTTCATTACCCAAATCATAGTTTTTCTCAGAAAAGTAAGGGAAAAAAAGAAAAGAAAAGGTATTTACAGATTATCAATTTCGTCTTTTTTCTTTTGTTTTCCTCTGTTTTTCAGCTCGAGAGTCGTGTAATTTTATATTTCAATTTGTTTTTTCTTTTATATTTGGAGCTTCTTGATCCTGTTGTTGGTTGTGTGTTCTCTTCTTATTTGATTATCTTTGGGTTGGTTTCTTTTCTAATTTTAGCTTGTTTCTGTTCTTTGTGTTTCTACGATTTTGCAGGAGAGATTATTCCTCTGTTTAGCGATATCTTGAGAAATTGA

mRNA sequence

ATGAAGTTGAGAGAGAGAGTCAACTTTTTGAAATCCAACCGCTCCATACTCTTTATTAATTCATCTTCTTCACCAAATCCAATAAATTTAAAATCCCATCTTCTTTTTCCGCCATTCTTCATTACCCAAATCATAGTTTTTCTCAGAAAAGTAAGGGAAAAAAAGAAAAGAAAAGGAGAGATTATTCCTCTGTTTAGCGATATCTTGAGAAATTGA

Coding sequence (CDS)

ATGAAGTTGAGAGAGAGAGTCAACTTTTTGAAATCCAACCGCTCCATACTCTTTATTAATTCATCTTCTTCACCAAATCCAATAAATTTAAAATCCCATCTTCTTTTTCCGCCATTCTTCATTACCCAAATCATAGTTTTTCTCAGAAAAGTAAGGGAAAAAAAGAAAAGAAAAGGAGAGATTATTCCTCTGTTTAGCGATATCTTGAGAAATTGA

Protein sequence

MKLRERVNFLKSNRSILFINSSSSPNPINLKSHLLFPPFFITQIIVFLRKVREKKKRKGEIIPLFSDILRN
Homology
[Close]
BLAST of CsaV3_1G028930 vs. NCBI nr
Match: KGN65158.1 (hypothetical protein Csa_1G256180 [Cucumis sativus])

HSP 1 Score: 139.8 bits (351), Expect = 3.6e-30
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0 

Query: 1  MKLRERVNFLKSNRSILFINSSSSPNPINLKSHLLFPPFFITQIIVFLRKVREKKKRKGE 60
          MKLRERVNFLKSNRSILFINSSSSPNPINLKSHLLFPPFFITQIIVFLRKVREKKKRKGE
Sbjct: 1  MKLRERVNFLKSNRSILFINSSSSPNPINLKSHLLFPPFFITQIIVFLRKVREKKKRKGE 60

Query: 61 IIPLFSDILRN 72
          IIPLFSDILRN
Sbjct: 61 IIPLFSDILRN 71

[Close]
BLAST of CsaV3_1G028930 vs. TrEMBL
Match: tr|A0A0A0LTQ0|A0A0A0LTQ0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G256180 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 2.4e-30
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0 

Query: 1  MKLRERVNFLKSNRSILFINSSSSPNPINLKSHLLFPPFFITQIIVFLRKVREKKKRKGE 60
          MKLRERVNFLKSNRSILFINSSSSPNPINLKSHLLFPPFFITQIIVFLRKVREKKKRKGE
Sbjct: 1  MKLRERVNFLKSNRSILFINSSSSPNPINLKSHLLFPPFFITQIIVFLRKVREKKKRKGE 60

Query: 61 IIPLFSDILRN 72
          IIPLFSDILRN
Sbjct: 61 IIPLFSDILRN 71

The following BLAST results are available for this feature:
BLAST of CsaV3_1G028930 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN65158.13.6e-30100.00hypothetical protein Csa_1G256180 [Cucumis sativus][more]
BLAST of CsaV3_1G028930 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G028930 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G028930 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LTQ0|A0A0A0LTQ0_CUCSA2.4e-30100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G256180 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G028930.1CsaV3_1G028930.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G028930CsGy1G017850Cucumber (Gy14) v2cgybcucB001
CsaV3_1G028930ClCG06G012360Watermelon (Charleston Gray)cucwcgB074
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G028930Wax gourdcucwgoB081
CsaV3_1G028930Wax gourdcucwgoB104
CsaV3_1G028930Cucumber (Chinese Long) v3cuccucB032
CsaV3_1G028930Silver-seed gourdcarcucB0142
CsaV3_1G028930Silver-seed gourdcarcucB0537
CsaV3_1G028930Melon (DHL92) v3.5.1cucmeB052
CsaV3_1G028930Cucumber (Gy14) v2cgybcucB165
CsaV3_1G028930Cucumber (Gy14) v1cgycucB100
CsaV3_1G028930Cucumber (Gy14) v1cgycucB413
CsaV3_1G028930Cucurbita maxima (Rimu)cmacucB0012
CsaV3_1G028930Cucurbita maxima (Rimu)cmacucB0067
CsaV3_1G028930Cucurbita maxima (Rimu)cmacucB0111
CsaV3_1G028930Cucurbita maxima (Rimu)cmacucB0517
CsaV3_1G028930Cucurbita moschata (Rifu)cmocucB0001
CsaV3_1G028930Cucurbita moschata (Rifu)cmocucB0054
CsaV3_1G028930Cucurbita moschata (Rifu)cmocucB0100
CsaV3_1G028930Cucurbita pepo (Zucchini)cpecucB0429
CsaV3_1G028930Cucurbita pepo (Zucchini)cpecucB0670
CsaV3_1G028930Cucurbita pepo (Zucchini)cpecucB0796
CsaV3_1G028930Cucurbita pepo (Zucchini)cpecucB0954
CsaV3_1G028930Wild cucumber (PI 183967)cpicucB000
CsaV3_1G028930Wild cucumber (PI 183967)cpicucB204
CsaV3_1G028930Bottle gourd (USVL1VR-Ls)cuclsiB074
CsaV3_1G028930Bottle gourd (USVL1VR-Ls)cuclsiB085
CsaV3_1G028930Melon (DHL92) v3.5.1cucmeB054
CsaV3_1G028930Melon (DHL92) v3.5.1cucmeB086
CsaV3_1G028930Melon (DHL92) v3.6.1cucmedB049
CsaV3_1G028930Melon (DHL92) v3.6.1cucmedB052
CsaV3_1G028930Melon (DHL92) v3.6.1cucmedB081
CsaV3_1G028930Watermelon (Charleston Gray)cucwcgB073
CsaV3_1G028930Watermelon (97103) v1cucwmB047
CsaV3_1G028930Watermelon (97103) v1cucwmB091
CsaV3_1G028930Watermelon (97103) v2cucwmbB062
CsaV3_1G028930Watermelon (97103) v2cucwmbB063