CsaV3_1G028910 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G028910
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	F-box protein At3g07870-like
Location	chr1 : 15826845 .. 15828385 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAGATTTAGGGAAAAATAAATAAATCCAACTAACAAAGTGGATATTTCTCCCAAACTCAGTATTTAAATAACATCGTGAAGGGATTCATATCATAATTATTCAATCACCCACAAAACAAAATCCTAACTTCTTCCATGGACACAATGACTTGGGGAGAGGGGCTTCCAACGGATATTGCTATCTCAATCTTCTCTAAACTCATTATCTCCAATTTGAGAGTATGCAGACTTGTTTGTAAAACTTGGAATGCTATGGTTTTAGATTATGCTCACTCTTATAAACTCAACAATGATTTCCTTCTCTCTGTCTCTGATGTAGTCCCCAATCCTAGAAGTAGTTGGCTATGCAATGCTAGGATGTATTGTTTCCGTTCTGATCCTACCAAACGCTTGGATGTATATTTGGATTTTTTTGAATTGGAAGGAAGTAAATCTGCCTTTTCGGTACCCTTCGACGACGGGGACTGGTCCAGGGTCACAATGATGTGTTACTGCAATGGCCTACTGTTTGTTTGCAAAAGCAAACTTAACACAGTGTGTCATGGCATATTTAATCCCACCACTAATGAGTTTCACCATGTTCCTAAAATATTTTGTGATATTTACCACTTTGGTTTAGGTTGCATTCCTTCAACAAAGGAATACAAATTATTTAGAGCTACTCGTTCAGATTTGATTATGTGTAGGACACAACAAGAATCTATCAGACAACGACCTATTACCATAATAGATGTTTTTGACTTTGGTAGAAACAAATGGAGGCAACTTCATTCCCTACCTTATCTCATTGACGATGGTGGTATTTACATGGATGGAGTCATCTATTTTGTGGGAAAAGTAAAAAATAAACCAAATGACTATGCCATCTATGCTCTCGATGTTGAAACTGAAAAAATTGAATTGAGTGCTGTCTTGAAAGCTGGACGTGGCCCAAGCTCTTCCCGCTCGCGAATACTACAATCTAATGGCATTGTTTATGCCATTATTTACGTCAACCTACCAACAACAACAACTCATTCCCAAGTGATGCAAGGCGTTCAAGTGTGGAGGATGCAAAAGAAAAACTCATGGATCAGAGAATTTGAGATCAGAAAATTTGTTATGAATGGCATGCCAGGCTCAATTATCCTTATCAAAGCGGAAGAGGTTTTGTGTAAGTTTGGTGGATCCAGTTTTTGCTGGTATAATGCTTCCACAAGGACGAAGAAGATGATTAGGAAGACTAAAAGTAAGTGCTTAGTGGGCATTTGTCAAATAGAAACCTTGAATTTTGGCTTACTTCAAAACATTTTAGCTGGTGATGGGAAGGAGAACCGTTATAATTCTAATTAGAAGCAAAAGGAGAACGATGAAAAGCAGAAGGCAGGTTAGGTTGAAGATTATGGTTCGCTTTTGTTTTTTCACACACCATGTAATCAACAGTTAGTTTTTTTCCGCATGCACCATGTAATCAGAACGCCAAATTTGATTGGAATTAGAACATATAATTGTAGGATGTGTTTCTAAATATAAATAGGTTATGATCAAAATTGTAATTAGT

mRNA sequence

ATGGACACAATGACTTGGGGAGAGGGGCTTCCAACGGATATTGCTATCTCAATCTTCTCTAAACTCATTATCTCCAATTTGAGAGTATGCAGACTTGTTTGTAAAACTTGGAATGCTATGGTTTTAGATTATGCTCACTCTTATAAACTCAACAATGATTTCCTTCTCTCTGTCTCTGATGTAGTCCCCAATCCTAGAAGTAGTTGGCTATGCAATGCTAGGATGTATTGTTTCCGTTCTGATCCTACCAAACGCTTGGATGTATATTTGGATTTTTTTGAATTGGAAGGAAGTAAATCTGCCTTTTCGGTACCCTTCGACGACGGGGACTGGTCCAGGGTCACAATGATGTGTTACTGCAATGGCCTACTGTTTGTTTGCAAAAGCAAACTTAACACAGTGTGTCATGGCATATTTAATCCCACCACTAATGAGTTTCACCATGTTCCTAAAATATTTTGTGATATTTACCACTTTGGTTTAGGTTGCATTCCTTCAACAAAGGAATACAAATTATTTAGAGCTACTCGTTCAGATTTGATTATGTGTAGGACACAACAAGAATCTATCAGACAACGACCTATTACCATAATAGATGTTTTTGACTTTGGTAGAAACAAATGGAGGCAACTTCATTCCCTACCTTATCTCATTGACGATGGTGGTATTTACATGGATGGAGTCATCTATTTTGTGGGAAAAGTAAAAAATAAACCAAATGACTATGCCATCTATGCTCTCGATGTTGAAACTGAAAAAATTGAATTGAGTGCTGTCTTGAAAGCTGGACGTGGCCCAAGCTCTTCCCGCTCGCGAATACTACAATCTAATGGCATTGTTTATGCCATTATTTACGTCAACCTACCAACAACAACAACTCATTCCCAAGTGATGCAAGGCGTTCAAGTGTGGAGGATGCAAAAGAAAAACTCATGGATCAGAGAATTTGAGATCAGAAAATTTGTTATGAATGGCATGCCAGGCTCAATTATCCTTATCAAAGCGGAAGAGGTTTTGTGTAAGTTTGGTGGATCCAGTTTTTGCTGGTATAATGCTTCCACAAGGACGAAGAAGATGATTAGGAAGACTAAAAGTAAGTGCTTAGTGGGCATTTGTCAAATAGAAACCTTGAATTTTGGCTTACTTCAAAACATTTTAGCTGGTGATGGGAAGGAGAACCGTTATAATTCTAATTAG

Coding sequence (CDS)

ATGGACACAATGACTTGGGGAGAGGGGCTTCCAACGGATATTGCTATCTCAATCTTCTCTAAACTCATTATCTCCAATTTGAGAGTATGCAGACTTGTTTGTAAAACTTGGAATGCTATGGTTTTAGATTATGCTCACTCTTATAAACTCAACAATGATTTCCTTCTCTCTGTCTCTGATGTAGTCCCCAATCCTAGAAGTAGTTGGCTATGCAATGCTAGGATGTATTGTTTCCGTTCTGATCCTACCAAACGCTTGGATGTATATTTGGATTTTTTTGAATTGGAAGGAAGTAAATCTGCCTTTTCGGTACCCTTCGACGACGGGGACTGGTCCAGGGTCACAATGATGTGTTACTGCAATGGCCTACTGTTTGTTTGCAAAAGCAAACTTAACACAGTGTGTCATGGCATATTTAATCCCACCACTAATGAGTTTCACCATGTTCCTAAAATATTTTGTGATATTTACCACTTTGGTTTAGGTTGCATTCCTTCAACAAAGGAATACAAATTATTTAGAGCTACTCGTTCAGATTTGATTATGTGTAGGACACAACAAGAATCTATCAGACAACGACCTATTACCATAATAGATGTTTTTGACTTTGGTAGAAACAAATGGAGGCAACTTCATTCCCTACCTTATCTCATTGACGATGGTGGTATTTACATGGATGGAGTCATCTATTTTGTGGGAAAAGTAAAAAATAAACCAAATGACTATGCCATCTATGCTCTCGATGTTGAAACTGAAAAAATTGAATTGAGTGCTGTCTTGAAAGCTGGACGTGGCCCAAGCTCTTCCCGCTCGCGAATACTACAATCTAATGGCATTGTTTATGCCATTATTTACGTCAACCTACCAACAACAACAACTCATTCCCAAGTGATGCAAGGCGTTCAAGTGTGGAGGATGCAAAAGAAAAACTCATGGATCAGAGAATTTGAGATCAGAAAATTTGTTATGAATGGCATGCCAGGCTCAATTATCCTTATCAAAGCGGAAGAGGTTTTGTGTAAGTTTGGTGGATCCAGTTTTTGCTGGTATAATGCTTCCACAAGGACGAAGAAGATGATTAGGAAGACTAAAAGTAAGTGCTTAGTGGGCATTTGTCAAATAGAAACCTTGAATTTTGGCTTACTTCAAAACATTTTAGCTGGTGATGGGAAGGAGAACCGTTATAATTCTAATTAG

Protein sequence

MDTMTWGEGLPTDIAISIFSKLIISNLRVCRLVCKTWNAMVLDYAHSYKLNNDFLLSVSDVVPNPRSSWLCNARMYCFRSDPTKRLDVYLDFFELEGSKSAFSVPFDDGDWSRVTMMCYCNGLLFVCKSKLNTVCHGIFNPTTNEFHHVPKIFCDIYHFGLGCIPSTKEYKLFRATRSDLIMCRTQQESIRQRPITIIDVFDFGRNKWRQLHSLPYLIDDGGIYMDGVIYFVGKVKNKPNDYAIYALDVETEKIELSAVLKAGRGPSSSRSRILQSNGIVYAIIYVNLPTTTTHSQVMQGVQVWRMQKKNSWIREFEIRKFVMNGMPGSIILIKAEEVLCKFGGSSFCWYNASTRTKKMIRKTKSKCLVGICQIETLNFGLLQNILAGDGKENRYNSN

Homology

[Close]

BLAST of CsaV3_1G028910 vs. NCBI nr
Match: KGN65156.1 (hypothetical protein Csa_1G255670 [Cucumis sativus])

HSP 1 Score: 280.0 bits (715), Expect = 1.2e-71
Identity = 155/262 (59.16%), Postives = 175/262 (66.79%), Query Frame = 0


Query: 134 VCHGIFNPTTNEFHHVPKIFCDIYHFGLGCIPSTKEYKLFRATRSDLIMCRTQQESIRQR 193
           +CHGIFNPTTNEF+HVP++F DIYHFGLG IPSTK+YKLFR   S     +TQQE     
Sbjct: 1   MCHGIFNPTTNEFYHVPEVFYDIYHFGLGYIPSTKQYKLFRLAHS-----KTQQE----- 60

Query: 194 PITIIDVFDFGRNKWRQLHSLPYLIDDGGIYMDGVIYFVGKVKNKPNDYAIYALDVETEK 253
           PITIIDVF FGRN+WRQLHSLPYLIDDGGIYMDGVIYF+ KVKNKPNDYAIYALDVETE+
Sbjct: 61  PITIIDVFHFGRNQWRQLHSLPYLIDDGGIYMDGVIYFLVKVKNKPNDYAIYALDVETEE 120

Query: 254 IELSAVLKAGRG-PSSSRSRILQSNGIVYAIIYVNLPTTTTHSQVMQGVQVWRMQKKNSW 313
           IELSA+L+ G G  SSSRS+ILQS G VY II++ LPTTT  S     VQVWRMQ+K   
Sbjct: 121 IELSAILEVGPGLISSSRSQILQSYGNVYVIIFIKLPTTTNSS-----VQVWRMQEKT-- 180

Query: 314 IREFEIRKFVMNGMPGSIILIKAEEVLCKFGGSSFCWYNASTRTKKMIRKTKSKCLVGIC 373
                                                            +T+ KCL+GIC
Sbjct: 181 -------------------------------------------------QTQRKCLMGIC 196

Query: 374 QIETLNFGLLQNILAGDGKENR 395
           QIETLNFGLL+NILA D KEN+
Sbjct: 241 QIETLNFGLLRNILACDEKENQ 196

[Close]

BLAST of CsaV3_1G028910 vs. NCBI nr
Match: KGN65172.1 (hypothetical protein Csa_1G257290 [Cucumis sativus])

HSP 1 Score: 265.0 bits (676), Expect = 4.1e-67
Identity = 172/406 (42.36%), Postives = 234/406 (57.64%), Query Frame = 0


Query: 3   TMTWGEGLPTDIAISIFSKLIISNLRVCRLVCKTWNAMVLDYAHSYK---LNNDFLLSVS 62
           T+  G+GLP  IA +IFSKL+IS+L  CRLV  TWN +VLDYA S +   L N FLLS S
Sbjct: 19  TINCGKGLPPLIAKTIFSKLVISDLPSCRLVSNTWNDLVLDYASSTQLQFLKNAFLLSTS 78

Query: 63  DVVPNPRSSWLCNARMYCFRSDPTKRLDVYLDF-FELEGSKSAFSVPFDDGDWSRVTMMC 122
           D   N +   LCN +M+C   D T++L    DF  E E  KSA S+ F DGDW+   +M 
Sbjct: 79  DRGLNYK---LCNPKMHCINLD-TRQLSNDFDFDLESEFIKSA-SLQF-DGDWTYTIIMA 138

Query: 123 -YCNGLLFVCKSKLNTVCHGIFNPTTNEFHHVPK--IFCDIYHFGLGCIPSTKEYKLFRA 182
             CNGL+ + K    T C GIFNP TNEF  V +   F D Y +G G  P TK+YKLFR 
Sbjct: 139 GSCNGLMLISKCSDYTWCQGIFNPMTNEFLQVSEHGTFDDFYLYGFGFSPITKQYKLFRV 198

Query: 183 TRSDLIMCRTQQESIRQRPITIIDVFDFGR----------NKWRQLHSLPYLIDDGGIYM 242
                  CR    ++       ++V  FGR          N+WR+LH+LP+ I   G+Y+
Sbjct: 199 FDKG-FRCRRTSSTVDTH--YTMEVLTFGRSGTNHSIPIHNQWRRLHTLPFEIVADGVYL 258

Query: 243 DGVIYFVGKVKNKPND--YAIYALDVETEKIELSAVLKAGRGPSSSRSRILQSNGIVYAI 302
           +G+IY++ K K K  +  Y IYALDVETE IE++ VL+    PS+   +I Q NG +YA 
Sbjct: 259 NGIIYWLVKEKGKDKEKKYVIYALDVETEHIEMTVVLQV---PSNGYGKIHQFNGTIYAT 318

Query: 303 IYVNLPTTTTHSQVMQGVQVWRMQKKNSWIREFEIRKFVMNGMPGSII-LIKAEEVLCKF 362
            ++N    +      + +QVWRMQ+K+SW+R+F I       +   +I + + EE+L   
Sbjct: 319 FHINWEKDS------RTIQVWRMQEKDSWVRKFVICDISREWIHLQLIKMFEDEEILFMI 378

Query: 363 GGSSFCWYNASTRTKKMIRKTKSKCLVGICQIETLNFGLLQNILAG 389
               FC+YN S++ K++I K + K    ICQIE+LNFG L  IL G
Sbjct: 379 NMDFFCFYNPSSKKKRIISKNQKKKRY-ICQIESLNFGRLSQILEG 405

[Close]

BLAST of CsaV3_1G028910 vs. NCBI nr
Match: XP_008460183.1 (PREDICTED: uncharacterized protein LOC103499068 [Cucumis melo])

HSP 1 Score: 264.2 bits (674), Expect = 7.0e-67
Identity = 170/402 (42.29%), Postives = 226/402 (56.22%), Query Frame = 0


Query: 1   MDTMTWGEGLPTDIAISIFSKLIISNLRVCRLVCKTWNAMVLDYAHSYKLN--NDFLLSV 60
           M+ M  G GLP  I   I   ++ISN    R+V KTWN  +LDYAH +     N FLLS 
Sbjct: 1   MENMKLGRGLPHHIVREILRWVVISNFPNLRVVSKTWNLFILDYAHEFSSTNANAFLLST 60

Query: 61  SDVVPNPRSSWLCNARMYCFRSDPTKRLDVYLDFFELEGSKSAFSVPFDDGDWSRVTMM- 120
            D  PN +     N +M+C R D T  LD  L   E E +  + S+ F DGDW  ++++ 
Sbjct: 61  CDRTPNNKD---LNHKMHCIRFDTTTHLDFDL---ESEWTTKSPSLSF-DGDWPFISLVD 120

Query: 121 CYCNGLLFVCKSKLNTVCHGIFNPTTNEFHHVPK--IFCDIYHFGLGCIPSTKEYKLFRA 180
             CNGL+F+CK    T C GIFNP TNEF  +P+  +  DIY + LG  P+TK+YKLFR 
Sbjct: 121 NSCNGLVFICKCAFFTRCDGIFNPMTNEFFQIPRGELDGDIYSYELGFSPTTKQYKLFRV 180

Query: 181 TRSDLIMCRTQQESIRQRPITIIDVFDFGR--------NKWRQLHSLPYLIDDGGIYMDG 240
           T S  +       S      +I+DV  F R        ++WR+LHSLP  I +G  Y++G
Sbjct: 181 TESFFLDGDADNNS------SIMDVLTFTRRSETNHNHSQWRRLHSLPLRIHNGA-YLNG 240

Query: 241 VIYFVGKVKNKPNDYAIYALDVETEKIELSAVLKAGRGPSSSRSRILQSNGIVYAIIYVN 300
           VIY++G  ++K N+Y IYA++VETE IELS +L  G   +SS + + Q N  VYA  ++N
Sbjct: 241 VIYWIGTKEDKENEYIIYAVNVETELIELSFILDLGPCSTSSHASLKQFNSSVYATFFIN 300

Query: 301 LPTTTTHSQVMQGVQVWRMQKKNSWIREFEIRKFVMNGMPGSIILIKAEEVLCKFGGSSF 360
            P T   S     +QVWRMQ+K+ WIREF I    +N    S+ LIKA      F     
Sbjct: 301 -PKTYNSS-----IQVWRMQEKDLWIREFVIVDIPINW--SSLTLIKA------FEDGEI 360

Query: 361 CWYNASTRTKKMIRKTKSKCLVGICQIETLNFGLLQNILAGD 390
            W       KK++ K + K    +CQIE LNFGLLQNILAG+
Sbjct: 361 LW------RKKIVTKNQKKDR-RVCQIEYLNFGLLQNILAGE 367

[Close]

BLAST of CsaV3_1G028910 vs. NCBI nr
Match: KGN63745.1 (hypothetical protein Csa_1G014420 [Cucumis sativus])

HSP 1 Score: 249.6 bits (636), Expect = 1.8e-62
Identity = 166/407 (40.79%), Postives = 228/407 (56.02%), Query Frame = 0


Query: 3   TMTWGEGLPTDIAISIFSKLIISNLRVCRLVCKTWNAMVLDYAHSYK---LNNDFLLSVS 62
           ++ WG+GLP  IA +IFSKL+ISNL  CR VCKTWN +VL YA S +   L N FLLS S
Sbjct: 35  SIDWGKGLPPLIAKTIFSKLVISNLPSCRFVCKTWNHLVLHYASSTQLQFLTNAFLLSTS 94

Query: 63  DVVPNPRSSWLCNARMYCFRSDPTKRL-DVYLDFFELEGSKSAFSVPFDDGDWSRVTMMC 122
           D + N     LCN +M+C   D  +   DV  D  E E  KS  S+ F  GDW+ + ++ 
Sbjct: 95  DRMLNYE---LCNPKMHCINLDNRQSSNDVDFD-LEWEFIKSG-SLQF-YGDWTFMILLA 154

Query: 123 Y-CNGLLFVCKSKLNTVCHGIFNPTTNEFHHVPK--IFCDIYHFGLGCIPSTKEYKLFRA 182
           + CNGL+F+ K    T C GIFNP TNEF  V +   F D YH+G G    +K+YKLFR 
Sbjct: 155 HPCNGLMFISKCSDYTWCQGIFNPMTNEFFQVSEQDTFDDFYHYGFGLSAISKQYKLFRV 214

Query: 183 TRSDLIMCRTQQESIRQRPIT--IIDVFDFGR---------NKWRQLHSLPYLIDDGGIY 242
           + +     R +      R  T   ++V  FGR         N+WR LH+L   +   G+Y
Sbjct: 215 SEAIPYSERFRLMITFGRDDTHYTMEVLTFGRSGTNHIPIHNQWRHLHNLSCDLIH-GVY 274

Query: 243 MDGVIYFVGKVKNK--PNDYAIYALDVETEKIELSAVLKAGRGPSSSRSRILQSNGIVYA 302
           ++G+IY++GK K K    +Y IYALDVETE+IE+S +L+      +S  ++   NG +YA
Sbjct: 275 LNGIIYWLGKEKGKKEKKEYVIYALDVETEQIEMSVILQV----QASDGKMHPFNGTIYA 334

Query: 303 IIYVNLPTTTTHSQVMQGVQVWRMQKKNSWIREFEIRKFVMN-GMPGSIILIKAEEVLCK 362
           + Y+N    +      + +QVW MQ+K SWIR+F IR      G    I + +  E+L  
Sbjct: 335 LFYINWEKDS------RTIQVWSMQEKCSWIRQFVIRDISKEWGCLELIKIFEDGEILFL 394

Query: 363 FGGSSFCWYNASTRTKKMIRKTKSKCLVGICQIETLNFGLLQNILAG 389
                FC+Y+  T  K++I K + K    +CQIE LNFG L  IL G
Sbjct: 395 IDSDFFCFYHPLTEKKRIISKNQKKNRF-VCQIECLNFGSLPEILEG 423

[Close]

BLAST of CsaV3_1G028910 vs. NCBI nr
Match: XP_011660339.1 (PREDICTED: putative F-box protein At1g32420 [Cucumis sativus] >KGN63707.1 hypothetical protein Csa_1G011590 [Cucumis sativus])

HSP 1 Score: 237.3 bits (604), Expect = 9.2e-59
Identity = 159/409 (38.88%), Postives = 225/409 (55.01%), Query Frame = 0


Query: 1   MDTMTWGEGLPTDIAISIFSKLIISNLRVCRLVCKTWNAMVLDYAHSYK--LNNDFLLSV 60
           M+   W  GLP+DI  +IFSKL++SNL  CR+VCK WN ++LD+A S    L NDF+L  
Sbjct: 1   MEITDWVSGLPSDIGKTIFSKLLVSNLPACRVVCKAWNELILDHASSASKFLTNDFILFT 60

Query: 61  SDVV-PNPRSSWLCNARMYCFRSDPTKRLDVYLDFFELEGSKSAFSVPFDDGDWSRVTMM 120
            DV+ P P      N  M+C R D     ++                 F+ G   +  ++
Sbjct: 61  CDVLHPFPCPDNHTNPNMHCLRFD-----NLXXXXXXXXXXXXXXXXXFEAGVVYK--LI 120

Query: 121 CYCNGLLFVCKSKL-----NTVCHGIFNPTTNEFHHVPKIFCDIYHFGLGCIPSTKEYKL 180
             CNGLL + K  L       +  GIFNP TNEF  VP      YH+G G IP+TK+YKL
Sbjct: 121 NSCNGLLLIYKLPLCFPGEFLLRVGIFNPMTNEFFQVPHDEIVEYHYGFGFIPATKQYKL 180

Query: 181 FRATRSDLIMCRTQQESIRQRPITIIDVFDFGR--------NKWRQLHSLPYLIDDGGIY 240
           FR      +  R ++ +     ++ +DV  FGR        ++WR+L+SLP  +++ G +
Sbjct: 181 FRVNFP--LNVRPEEPN----SVSHLDVLTFGRSEIIDPKQSQWRRLYSLPGGVENHGAH 240

Query: 241 MDGVIYFVGKVKNKPNDYAIYALDVETEKIELSAVLKAGRGPSSSRSRILQSNGIVYAII 300
           ++GVIY++G+ K + N+Y +Y LDVETEKI+LSAVL+       S   I Q NG VYA+ 
Sbjct: 241 VNGVIYWLGEGKEQ-NEYVVYTLDVETEKIQLSAVLEVVNPMWMS---IQQFNGTVYAVF 300

Query: 301 YVNLPTTTTHSQVMQGVQVWRMQKKNSWIREFEIRKFVMNGMPGSIILIKA---EEVLCK 360
           ++            +  QVWRMQ+KNSWIR+F I          ++ L+KA    E+LC 
Sbjct: 301 HME-----------EATQVWRMQEKNSWIRDFVIDDC-------NLTLVKAYENGEMLCM 360

Query: 361 FGGSSFCWYNASTRTKKMIR-KTKSKCLVGICQIETLNFGLLQNILAGD 390
              + F  YN ST +KK++  + + K  +GIC +E LNFG L NILAGD
Sbjct: 361 VKPTVFWLYNPSTGSKKVLSLRNEKKIFLGICHLE-LNFGSLLNILAGD 373

[Close]

BLAST of CsaV3_1G028910 vs. TAIR10
Match: AT1G53550.1 (F-box family protein)

HSP 1 Score: 67.0 bits (162), Expect = 3.0e-11
Identity = 67/265 (25.28%), Postives = 115/265 (43.40%), Query Frame = 0


Query: 10  LPTDIAISIFSKLIISNLRVCRLVCKTWNAMVLDYAHSYKLNNDFLLSVSDVVPNPRSSW 69
           +P D+ I+I S+L +  +  CR V K W++++       + N + L  V      PR  +
Sbjct: 35  IPVDLVINILSRLSLECIARCRCVSKLWSSII------RRPNYNQLFPVKSSA-TPRLLF 94

Query: 70  LCN-ARMYCFRSDPTKRLDVYLDFFELEGSKSAFSVPFDDGDWSRVTMMCY-CNGLLFVC 129
           +   AR   F S P          F    S S  +        +R + +C   +GL+   
Sbjct: 95  VFKVARELFFNSSP--------QHFNPNNS-SLVATSLQKTSSTRFSQLCRPVHGLICSQ 154

Query: 130 KSKLNTVCHGIFNPTTNEFHHVPK---------IFCDIYHFGLGCIPSTKEYKLFRATRS 189
             + N +   I NPTT E+  +PK            +   +  G  P  K++K+ R T  
Sbjct: 155 HIEENYLFALISNPTTGEYIALPKQRMEEMNSETIIEKVRYSFGYDPIDKQFKVLRIT-- 214

Query: 190 DLIMCRTQQESIRQRPITIIDVFDFGRNKWR--QLHSLPYLIDDGGIYMDGVIYFVGKVK 249
             +   + + S   + +T+     FG   WR  Q   + YL++D GI ++GV+Y+  ++ 
Sbjct: 215 -WLHRGSHEWSSEYQVLTL----GFGNISWRNTQCCVVHYLLEDSGICINGVLYYPARLD 274

Query: 250 NKPNDYAIYALDVETEKIELSAVLK 262
           N+   Y I   DV TEK   +++ K
Sbjct: 275 NR--KYTIVCFDVMTEKFSFTSIDK 274

[Close]

BLAST of CsaV3_1G028910 vs. TAIR10
Match: AT3G07870.1 (F-box and associated interaction domains-containing protein)

HSP 1 Score: 66.6 bits (161), Expect = 3.9e-11
Identity = 77/339 (22.71%), Postives = 135/339 (39.82%), Query Frame = 0


Query: 8   EGLPTDIAISIFSKLIISNLRVCRLVCKTWNAMVLDYAHSYKLNNDFLLSVSDVVPNPRS 67
           E LP DI   IFS+L IS++     VC++W +++  +    +L++         +     
Sbjct: 26  ESLPEDIIADIFSRLPISSIARLMFVCRSWRSVLTQHG---RLSSSSSSPTKPCLLLHCD 85

Query: 68  SWLCNARMYCFRSDPTKRLDVYLDFFELEGSKSAFSVPFDDGDWSRVTMMCYCNGLLFVC 127
           S + N   +   S+  KR+           S   F V            +  CNGLL + 
Sbjct: 86  SPIRNGLHFLDLSEEEKRIKTKKFTLRFASSMPEFDV------------VGSCNGLLCLS 145

Query: 128 KSKLNTVCHGIFNPTTNEFHHVPKIFCDIYH-----FGLGCIPSTKEYKL-----FRATR 187
            S  N   + ++NP T     +P+   + YH     FG G    TKEYK+     FR + 
Sbjct: 146 DSLYNDSLY-LYNPFTTNSLELPEC-SNKYHDQELVFGFGFHEMTKEYKVLKIVYFRGSS 205

Query: 188 SD-----LIMCRTQQESIRQRPITIIDVFDFGRNKWRQLHSLPY--LIDDGGIYMDGVIY 247
           S+         R Q +    + +T+          WR L   PY  +       ++G ++
Sbjct: 206 SNNNGIYRGRGRIQYKQSEVQILTLSSKTTDQSLSWRSLGKAPYKFVKRSSEALVNGRLH 265

Query: 248 FVGKVKNKPNDYAIYALDVETEKIELSAVLKAGRGPSSSRSRILQSNGIVYAIIYVNLPT 307
           FV + +    D    + D+E E+ +       G G + +  R++   G + A++Y N   
Sbjct: 266 FVTRPRRHVPDRKFVSFDLEDEEFKEIPKPDCG-GLNRTNHRLVNLKGCLCAVVYGNYGK 325

Query: 308 TTTHSQVMQGVQVWRMQK---KNSWIREFEIRKFVMNGM 327
                     + +W M+    K SW +E+ I  ++  G+
Sbjct: 326 ----------LDIWVMKTYGVKESWGKEYSIGTYLPKGL 336

[Close]

BLAST of CsaV3_1G028910 vs. TAIR10
Match: AT1G33020.1 (F-box and associated interaction domains-containing protein)

HSP 1 Score: 52.8 bits (125), Expect = 5.8e-07
Identity = 59/253 (23.32%), Postives = 106/253 (41.90%), Query Frame = 0


Query: 8   EGLPTDIAISIFSKLIISNLRVCRLVCKTWNAMVLDYAHSYKLNNDFLLSVSDVVPNPRS 67
           + +PTD+ + IFS++   ++  CR V K W +M+    H Y     FL   SD   +PR 
Sbjct: 8   DSIPTDLILEIFSRMSTKSIGRCRCVSKLWKSML---GHPY-FTELFLTRSSD---HPRL 67

Query: 68  SW-LCNARMYCFRSDPTKRLDVYLDFFELEGSKSAFSVPFDDGDWSRVTMMCYCNGLLFV 127
            + +   R + F S P  + D+Y     ++   +            R     Y +G ++ 
Sbjct: 68  LFGVKRERQWLFFSSPQPQ-DLYEKSSLVDFHMNXXXXXXXXXGDIRRNECTYVSGFIYF 127

Query: 128 CKSKL-NTVC--HGIFNPTTNEFHHVPKIFCDIYHFGLGCIPSTKEYKLFRATRSDLIMC 187
            + ++ N +C    I NP T ++  +  I        LG  P  K++K+ R   +D    
Sbjct: 128 PRKRIKNYLCDFRVICNPITGQYAILQLITFHEKRSFLGFDPIDKQFKVLRMKYND---- 187

Query: 188 RTQQESIRQRPITIIDVFDFGRNKWRQLH-SLPYLIDDGGIYMDGVIYFVGKVKNKPNDY 247
                  R   +  I   + G+ +WR++   L +      I  +GV+Y++ +       Y
Sbjct: 188 -------RGIVVHHILTLEPGKMRWRKIRCPLAHEPFWEEICANGVLYYLAE-PTDGGSY 240

Query: 248 AIYALDVETEKIE 256
            I   DV +EK +
Sbjct: 248 VICCFDVRSEKFK 240

[Close]

BLAST of CsaV3_1G028910 vs. TAIR10
Match: AT3G16210.1 (F-box family protein)

HSP 1 Score: 47.8 bits (112), Expect = 1.9e-05
Identity = 55/233 (23.61%), Postives = 89/233 (38.20%), Query Frame = 0


Query: 10  LPTDIAISIFSKLIISNLRVCRLVCKTWNAMVLDYAHSYKLNNDFLLSVSDVVPNPRSSW 69
           LP ++AI I  +L + +L   R VCKTW  ++ D          F  +  D+ P      
Sbjct: 5   LPEELAIEILVRLSMKDLARFRCVCKTWRDLIND--------PGFTETYRDMSP------ 64

Query: 70  LCNARMYCFRSDPTKRLDVYLDFFELEGS----KSAFSVPFDDGDWSRVTMMCYCNGLLF 129
              A+   F       LDV       EG      +    P D       T + +C+G L 
Sbjct: 65  ---AKFVSFYDKNFYMLDV-------EGKHPVITNKLDFPLDQSMIDESTCVLHCDGTLC 124

Query: 130 VCKSKLNTVCHGIFNPTTNEFHHVPK--IFCDIYHFGLGCIPSTKEYKLFRATRSDLIMC 189
           V   K +T+   ++NP + +F  VP   I+ D    G G  P   +YK+           
Sbjct: 125 V-TLKNHTLM--VWNPFSKQFKIVPNPGIYQDSNILGFGYDPVHDDYKVV---------- 184

Query: 190 RTQQESIRQRPITIIDVFDFGRNKWRQLHSLPY----LIDDGGIYMDGVIYFV 233
                 I +  ++   VF+F    W +   + Y      D  G ++D  +Y++
Sbjct: 185 ----TFIDRLDVSTAHVFEFRTGSWGESLRISYPDWHYRDRRGTFLDQYLYWI 196

[Close]

BLAST of CsaV3_1G028910 vs. TAIR10
Match: AT2G38590.1 (F-box and associated interaction domains-containing protein)

HSP 1 Score: 45.1 bits (105), Expect = 1.2e-04
Identity = 59/261 (22.61%), Postives = 101/261 (38.70%), Query Frame = 0


Query: 10  LPTDIAISIFSKLIISNLRVCRLVCKTWNAMVLDYAHSYKLNNDFLLSVSDVVPNPRSSW 69
           LP  +   IF ++ + +LR  RL CK+WN   L  + S++      L +S        S 
Sbjct: 8   LPRVLIEEIFFRVPLKSLRAVRLTCKSWN--TLSKSRSFR-----KLYISKRATREEESM 67

Query: 70  ---LCNARMYCFRSDPTKRLDVYLDFFELEGSKS-AFS-VPFDDGDWSRVTMMCYCNGLL 129
              + N  +Y  R      +D    F +    KS AF   P    +  +++ + +C GLL
Sbjct: 68  MIAMMNFDLYSMRVVVDDDVDPSKAFKKKRNKKSIAFKRQPIFLDEQVKISQVFHCEGLL 127

Query: 130 FVCKSKLNTVCHGIFNPTTNE-------FHHVPKIFCDIYHFGLGCIPSTKEYKLFRATR 189
            +C  K +     ++NP   +       + H P     IY  G     S   ++L R   
Sbjct: 128 -LCFLKEDDTRVVVWNPYCGQTRWIQLRYSHRPHKDRFIYALGYKDKESRGSFQLLRFVD 187

Query: 190 SDLIMCRTQQESIRQRPITIIDVFDFGRNKWRQLHSLPY---LIDDGGIYMDGVIYFVGK 249
             L   + Q            +++DF  + W  L   P+      D G+ ++G  Y+  K
Sbjct: 188 YFLGAPKNQ--------YFWYEIYDFNSDSWTTLDVTPHWCIYCCDRGVSLNGNTYWCAK 247

Query: 250 VKNKPNDYA--IYALDVETEK 254
            +   +D    I + D   E+
Sbjct: 248 ERKAEDDIVDHIISFDFTNER 252

[Close]

BLAST of CsaV3_1G028910 vs. Swiss-Prot
Match: sp|Q9LPH0|FB57_ARATH (Putative F-box protein At1g53550 OS=Arabidopsis thaliana OX=3702 GN=At1g53550 PE=4 SV=2)

HSP 1 Score: 67.0 bits (162), Expect = 5.4e-10
Identity = 67/265 (25.28%), Postives = 115/265 (43.40%), Query Frame = 0


Query: 10  LPTDIAISIFSKLIISNLRVCRLVCKTWNAMVLDYAHSYKLNNDFLLSVSDVVPNPRSSW 69
           +P D+ I+I S+L +  +  CR V K W++++       + N + L  V      PR  +
Sbjct: 35  IPVDLVINILSRLSLECIARCRCVSKLWSSII------RRPNYNQLFPVKSSA-TPRLLF 94

Query: 70  LCN-ARMYCFRSDPTKRLDVYLDFFELEGSKSAFSVPFDDGDWSRVTMMCY-CNGLLFVC 129
           +   AR   F S P          F    S S  +        +R + +C   +GL+   
Sbjct: 95  VFKVARELFFNSSP--------QHFNPNNS-SLVATSLQKTSSTRFSQLCRPVHGLICSQ 154

Query: 130 KSKLNTVCHGIFNPTTNEFHHVPK---------IFCDIYHFGLGCIPSTKEYKLFRATRS 189
             + N +   I NPTT E+  +PK            +   +  G  P  K++K+ R T  
Sbjct: 155 HIEENYLFALISNPTTGEYIALPKQRMEEMNSETIIEKVRYSFGYDPIDKQFKVLRIT-- 214

Query: 190 DLIMCRTQQESIRQRPITIIDVFDFGRNKWR--QLHSLPYLIDDGGIYMDGVIYFVGKVK 249
             +   + + S   + +T+     FG   WR  Q   + YL++D GI ++GV+Y+  ++ 
Sbjct: 215 -WLHRGSHEWSSEYQVLTL----GFGNISWRNTQCCVVHYLLEDSGICINGVLYYPARLD 274

Query: 250 NKPNDYAIYALDVETEKIELSAVLK 262
           N+   Y I   DV TEK   +++ K
Sbjct: 275 NR--KYTIVCFDVMTEKFSFTSIDK 274

[Close]

BLAST of CsaV3_1G028910 vs. Swiss-Prot
Match: sp|Q9SFC7|FB135_ARATH (F-box protein At3g07870 OS=Arabidopsis thaliana OX=3702 GN=At3g07870 PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 7.0e-10
Identity = 77/339 (22.71%), Postives = 135/339 (39.82%), Query Frame = 0


Query: 8   EGLPTDIAISIFSKLIISNLRVCRLVCKTWNAMVLDYAHSYKLNNDFLLSVSDVVPNPRS 67
           E LP DI   IFS+L IS++     VC++W +++  +    +L++         +     
Sbjct: 26  ESLPEDIIADIFSRLPISSIARLMFVCRSWRSVLTQHG---RLSSSSSSPTKPCLLLHCD 85

Query: 68  SWLCNARMYCFRSDPTKRLDVYLDFFELEGSKSAFSVPFDDGDWSRVTMMCYCNGLLFVC 127
           S + N   +   S+  KR+           S   F V            +  CNGLL + 
Sbjct: 86  SPIRNGLHFLDLSEEEKRIKTKKFTLRFASSMPEFDV------------VGSCNGLLCLS 145

Query: 128 KSKLNTVCHGIFNPTTNEFHHVPKIFCDIYH-----FGLGCIPSTKEYKL-----FRATR 187
            S  N   + ++NP T     +P+   + YH     FG G    TKEYK+     FR + 
Sbjct: 146 DSLYNDSLY-LYNPFTTNSLELPEC-SNKYHDQELVFGFGFHEMTKEYKVLKIVYFRGSS 205

Query: 188 SD-----LIMCRTQQESIRQRPITIIDVFDFGRNKWRQLHSLPY--LIDDGGIYMDGVIY 247
           S+         R Q +    + +T+          WR L   PY  +       ++G ++
Sbjct: 206 SNNNGIYRGRGRIQYKQSEVQILTLSSKTTDQSLSWRSLGKAPYKFVKRSSEALVNGRLH 265

Query: 248 FVGKVKNKPNDYAIYALDVETEKIELSAVLKAGRGPSSSRSRILQSNGIVYAIIYVNLPT 307
           FV + +    D    + D+E E+ +       G G + +  R++   G + A++Y N   
Sbjct: 266 FVTRPRRHVPDRKFVSFDLEDEEFKEIPKPDCG-GLNRTNHRLVNLKGCLCAVVYGNYGK 325

Query: 308 TTTHSQVMQGVQVWRMQK---KNSWIREFEIRKFVMNGM 327
                     + +W M+    K SW +E+ I  ++  G+
Sbjct: 326 ----------LDIWVMKTYGVKESWGKEYSIGTYLPKGL 336

[Close]

BLAST of CsaV3_1G028910 vs. Swiss-Prot
Match: sp|Q9MAP1|FB33_ARATH (Putative F-box protein At1g33020 OS=Arabidopsis thaliana OX=3702 GN=At1g33020 PE=4 SV=2)

HSP 1 Score: 52.8 bits (125), Expect = 1.0e-05
Identity = 59/253 (23.32%), Postives = 106/253 (41.90%), Query Frame = 0


Query: 8   EGLPTDIAISIFSKLIISNLRVCRLVCKTWNAMVLDYAHSYKLNNDFLLSVSDVVPNPRS 67
           + +PTD+ + IFS++   ++  CR V K W +M+    H Y     FL   SD   +PR 
Sbjct: 8   DSIPTDLILEIFSRMSTKSIGRCRCVSKLWKSML---GHPY-FTELFLTRSSD---HPRL 67

Query: 68  SW-LCNARMYCFRSDPTKRLDVYLDFFELEGSKSAFSVPFDDGDWSRVTMMCYCNGLLFV 127
            + +   R + F S P  + D+Y     ++   +            R     Y +G ++ 
Sbjct: 68  LFGVKRERQWLFFSSPQPQ-DLYEKSSLVDFHMNXXXXXXXXXGDIRRNECTYVSGFIYF 127

Query: 128 CKSKL-NTVC--HGIFNPTTNEFHHVPKIFCDIYHFGLGCIPSTKEYKLFRATRSDLIMC 187
            + ++ N +C    I NP T ++  +  I        LG  P  K++K+ R   +D    
Sbjct: 128 PRKRIKNYLCDFRVICNPITGQYAILQLITFHEKRSFLGFDPIDKQFKVLRMKYND---- 187

Query: 188 RTQQESIRQRPITIIDVFDFGRNKWRQLH-SLPYLIDDGGIYMDGVIYFVGKVKNKPNDY 247
                  R   +  I   + G+ +WR++   L +      I  +GV+Y++ +       Y
Sbjct: 188 -------RGIVVHHILTLEPGKMRWRKIRCPLAHEPFWEEICANGVLYYLAE-PTDGGSY 240

Query: 248 AIYALDVETEKIE 256
            I   DV +EK +
Sbjct: 248 VICCFDVRSEKFK 240

[Close]

BLAST of CsaV3_1G028910 vs. Swiss-Prot
Match: sp|Q9LU24|FB145_ARATH (Putative F-box protein At3g16210 OS=Arabidopsis thaliana OX=3702 GN=At3g16210 PE=4 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 3.4e-04
Identity = 55/233 (23.61%), Postives = 89/233 (38.20%), Query Frame = 0


Query: 10  LPTDIAISIFSKLIISNLRVCRLVCKTWNAMVLDYAHSYKLNNDFLLSVSDVVPNPRSSW 69
           LP ++AI I  +L + +L   R VCKTW  ++ D          F  +  D+ P      
Sbjct: 5   LPEELAIEILVRLSMKDLARFRCVCKTWRDLIND--------PGFTETYRDMSP------ 64

Query: 70  LCNARMYCFRSDPTKRLDVYLDFFELEGS----KSAFSVPFDDGDWSRVTMMCYCNGLLF 129
              A+   F       LDV       EG      +    P D       T + +C+G L 
Sbjct: 65  ---AKFVSFYDKNFYMLDV-------EGKHPVITNKLDFPLDQSMIDESTCVLHCDGTLC 124

Query: 130 VCKSKLNTVCHGIFNPTTNEFHHVPK--IFCDIYHFGLGCIPSTKEYKLFRATRSDLIMC 189
           V   K +T+   ++NP + +F  VP   I+ D    G G  P   +YK+           
Sbjct: 125 V-TLKNHTLM--VWNPFSKQFKIVPNPGIYQDSNILGFGYDPVHDDYKVV---------- 184

Query: 190 RTQQESIRQRPITIIDVFDFGRNKWRQLHSLPY----LIDDGGIYMDGVIYFV 233
                 I +  ++   VF+F    W +   + Y      D  G ++D  +Y++
Sbjct: 185 ----TFIDRLDVSTAHVFEFRTGSWGESLRISYPDWHYRDRRGTFLDQYLYWI 196

[Close]

BLAST of CsaV3_1G028910 vs. TrEMBL
Match: tr|A0A0A0LYU1|A0A0A0LYU1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G255670 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 8.2e-72
Identity = 155/262 (59.16%), Postives = 175/262 (66.79%), Query Frame = 0


Query: 134 VCHGIFNPTTNEFHHVPKIFCDIYHFGLGCIPSTKEYKLFRATRSDLIMCRTQQESIRQR 193
           +CHGIFNPTTNEF+HVP++F DIYHFGLG IPSTK+YKLFR   S     +TQQE     
Sbjct: 1   MCHGIFNPTTNEFYHVPEVFYDIYHFGLGYIPSTKQYKLFRLAHS-----KTQQE----- 60

Query: 194 PITIIDVFDFGRNKWRQLHSLPYLIDDGGIYMDGVIYFVGKVKNKPNDYAIYALDVETEK 253
           PITIIDVF FGRN+WRQLHSLPYLIDDGGIYMDGVIYF+ KVKNKPNDYAIYALDVETE+
Sbjct: 61  PITIIDVFHFGRNQWRQLHSLPYLIDDGGIYMDGVIYFLVKVKNKPNDYAIYALDVETEE 120

Query: 254 IELSAVLKAGRG-PSSSRSRILQSNGIVYAIIYVNLPTTTTHSQVMQGVQVWRMQKKNSW 313
           IELSA+L+ G G  SSSRS+ILQS G VY II++ LPTTT  S     VQVWRMQ+K   
Sbjct: 121 IELSAILEVGPGLISSSRSQILQSYGNVYVIIFIKLPTTTNSS-----VQVWRMQEKT-- 180

Query: 314 IREFEIRKFVMNGMPGSIILIKAEEVLCKFGGSSFCWYNASTRTKKMIRKTKSKCLVGIC 373
                                                            +T+ KCL+GIC
Sbjct: 181 -------------------------------------------------QTQRKCLMGIC 196

Query: 374 QIETLNFGLLQNILAGDGKENR 395
           QIETLNFGLL+NILA D KEN+
Sbjct: 241 QIETLNFGLLRNILACDEKENQ 196

[Close]

BLAST of CsaV3_1G028910 vs. TrEMBL
Match: tr|A0A0A0LWG1|A0A0A0LWG1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G257290 PE=4 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 2.7e-67
Identity = 172/406 (42.36%), Postives = 234/406 (57.64%), Query Frame = 0


Query: 3   TMTWGEGLPTDIAISIFSKLIISNLRVCRLVCKTWNAMVLDYAHSYK---LNNDFLLSVS 62
           T+  G+GLP  IA +IFSKL+IS+L  CRLV  TWN +VLDYA S +   L N FLLS S
Sbjct: 19  TINCGKGLPPLIAKTIFSKLVISDLPSCRLVSNTWNDLVLDYASSTQLQFLKNAFLLSTS 78

Query: 63  DVVPNPRSSWLCNARMYCFRSDPTKRLDVYLDF-FELEGSKSAFSVPFDDGDWSRVTMMC 122
           D   N +   LCN +M+C   D T++L    DF  E E  KSA S+ F DGDW+   +M 
Sbjct: 79  DRGLNYK---LCNPKMHCINLD-TRQLSNDFDFDLESEFIKSA-SLQF-DGDWTYTIIMA 138

Query: 123 -YCNGLLFVCKSKLNTVCHGIFNPTTNEFHHVPK--IFCDIYHFGLGCIPSTKEYKLFRA 182
             CNGL+ + K    T C GIFNP TNEF  V +   F D Y +G G  P TK+YKLFR 
Sbjct: 139 GSCNGLMLISKCSDYTWCQGIFNPMTNEFLQVSEHGTFDDFYLYGFGFSPITKQYKLFRV 198

Query: 183 TRSDLIMCRTQQESIRQRPITIIDVFDFGR----------NKWRQLHSLPYLIDDGGIYM 242
                  CR    ++       ++V  FGR          N+WR+LH+LP+ I   G+Y+
Sbjct: 199 FDKG-FRCRRTSSTVDTH--YTMEVLTFGRSGTNHSIPIHNQWRRLHTLPFEIVADGVYL 258

Query: 243 DGVIYFVGKVKNKPND--YAIYALDVETEKIELSAVLKAGRGPSSSRSRILQSNGIVYAI 302
           +G+IY++ K K K  +  Y IYALDVETE IE++ VL+    PS+   +I Q NG +YA 
Sbjct: 259 NGIIYWLVKEKGKDKEKKYVIYALDVETEHIEMTVVLQV---PSNGYGKIHQFNGTIYAT 318

Query: 303 IYVNLPTTTTHSQVMQGVQVWRMQKKNSWIREFEIRKFVMNGMPGSII-LIKAEEVLCKF 362
            ++N    +      + +QVWRMQ+K+SW+R+F I       +   +I + + EE+L   
Sbjct: 319 FHINWEKDS------RTIQVWRMQEKDSWVRKFVICDISREWIHLQLIKMFEDEEILFMI 378

Query: 363 GGSSFCWYNASTRTKKMIRKTKSKCLVGICQIETLNFGLLQNILAG 389
               FC+YN S++ K++I K + K    ICQIE+LNFG L  IL G
Sbjct: 379 NMDFFCFYNPSSKKKRIISKNQKKKRY-ICQIESLNFGRLSQILEG 405

[Close]

BLAST of CsaV3_1G028910 vs. TrEMBL
Match: tr|A0A1S3CCE7|A0A1S3CCE7_CUCME (uncharacterized protein LOC103499068 OS=Cucumis melo OX=3656 GN=LOC103499068 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 4.6e-67
Identity = 170/402 (42.29%), Postives = 226/402 (56.22%), Query Frame = 0


Query: 1   MDTMTWGEGLPTDIAISIFSKLIISNLRVCRLVCKTWNAMVLDYAHSYKLN--NDFLLSV 60
           M+ M  G GLP  I   I   ++ISN    R+V KTWN  +LDYAH +     N FLLS 
Sbjct: 1   MENMKLGRGLPHHIVREILRWVVISNFPNLRVVSKTWNLFILDYAHEFSSTNANAFLLST 60

Query: 61  SDVVPNPRSSWLCNARMYCFRSDPTKRLDVYLDFFELEGSKSAFSVPFDDGDWSRVTMM- 120
            D  PN +     N +M+C R D T  LD  L   E E +  + S+ F DGDW  ++++ 
Sbjct: 61  CDRTPNNKD---LNHKMHCIRFDTTTHLDFDL---ESEWTTKSPSLSF-DGDWPFISLVD 120

Query: 121 CYCNGLLFVCKSKLNTVCHGIFNPTTNEFHHVPK--IFCDIYHFGLGCIPSTKEYKLFRA 180
             CNGL+F+CK    T C GIFNP TNEF  +P+  +  DIY + LG  P+TK+YKLFR 
Sbjct: 121 NSCNGLVFICKCAFFTRCDGIFNPMTNEFFQIPRGELDGDIYSYELGFSPTTKQYKLFRV 180

Query: 181 TRSDLIMCRTQQESIRQRPITIIDVFDFGR--------NKWRQLHSLPYLIDDGGIYMDG 240
           T S  +       S      +I+DV  F R        ++WR+LHSLP  I +G  Y++G
Sbjct: 181 TESFFLDGDADNNS------SIMDVLTFTRRSETNHNHSQWRRLHSLPLRIHNGA-YLNG 240

Query: 241 VIYFVGKVKNKPNDYAIYALDVETEKIELSAVLKAGRGPSSSRSRILQSNGIVYAIIYVN 300
           VIY++G  ++K N+Y IYA++VETE IELS +L  G   +SS + + Q N  VYA  ++N
Sbjct: 241 VIYWIGTKEDKENEYIIYAVNVETELIELSFILDLGPCSTSSHASLKQFNSSVYATFFIN 300

Query: 301 LPTTTTHSQVMQGVQVWRMQKKNSWIREFEIRKFVMNGMPGSIILIKAEEVLCKFGGSSF 360
            P T   S     +QVWRMQ+K+ WIREF I    +N    S+ LIKA      F     
Sbjct: 301 -PKTYNSS-----IQVWRMQEKDLWIREFVIVDIPINW--SSLTLIKA------FEDGEI 360

Query: 361 CWYNASTRTKKMIRKTKSKCLVGICQIETLNFGLLQNILAGD 390
            W       KK++ K + K    +CQIE LNFGLLQNILAG+
Sbjct: 361 LW------RKKIVTKNQKKDR-RVCQIEYLNFGLLQNILAGE 367

[Close]

BLAST of CsaV3_1G028910 vs. TrEMBL
Match: tr|A0A0A0LPC6|A0A0A0LPC6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G014420 PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 1.2e-62
Identity = 166/407 (40.79%), Postives = 228/407 (56.02%), Query Frame = 0


Query: 3   TMTWGEGLPTDIAISIFSKLIISNLRVCRLVCKTWNAMVLDYAHSYK---LNNDFLLSVS 62
           ++ WG+GLP  IA +IFSKL+ISNL  CR VCKTWN +VL YA S +   L N FLLS S
Sbjct: 35  SIDWGKGLPPLIAKTIFSKLVISNLPSCRFVCKTWNHLVLHYASSTQLQFLTNAFLLSTS 94

Query: 63  DVVPNPRSSWLCNARMYCFRSDPTKRL-DVYLDFFELEGSKSAFSVPFDDGDWSRVTMMC 122
           D + N     LCN +M+C   D  +   DV  D  E E  KS  S+ F  GDW+ + ++ 
Sbjct: 95  DRMLNYE---LCNPKMHCINLDNRQSSNDVDFD-LEWEFIKSG-SLQF-YGDWTFMILLA 154

Query: 123 Y-CNGLLFVCKSKLNTVCHGIFNPTTNEFHHVPK--IFCDIYHFGLGCIPSTKEYKLFRA 182
           + CNGL+F+ K    T C GIFNP TNEF  V +   F D YH+G G    +K+YKLFR 
Sbjct: 155 HPCNGLMFISKCSDYTWCQGIFNPMTNEFFQVSEQDTFDDFYHYGFGLSAISKQYKLFRV 214

Query: 183 TRSDLIMCRTQQESIRQRPIT--IIDVFDFGR---------NKWRQLHSLPYLIDDGGIY 242
           + +     R +      R  T   ++V  FGR         N+WR LH+L   +   G+Y
Sbjct: 215 SEAIPYSERFRLMITFGRDDTHYTMEVLTFGRSGTNHIPIHNQWRHLHNLSCDLIH-GVY 274

Query: 243 MDGVIYFVGKVKNK--PNDYAIYALDVETEKIELSAVLKAGRGPSSSRSRILQSNGIVYA 302
           ++G+IY++GK K K    +Y IYALDVETE+IE+S +L+      +S  ++   NG +YA
Sbjct: 275 LNGIIYWLGKEKGKKEKKEYVIYALDVETEQIEMSVILQV----QASDGKMHPFNGTIYA 334

Query: 303 IIYVNLPTTTTHSQVMQGVQVWRMQKKNSWIREFEIRKFVMN-GMPGSIILIKAEEVLCK 362
           + Y+N    +      + +QVW MQ+K SWIR+F IR      G    I + +  E+L  
Sbjct: 335 LFYINWEKDS------RTIQVWSMQEKCSWIRQFVIRDISKEWGCLELIKIFEDGEILFL 394

Query: 363 FGGSSFCWYNASTRTKKMIRKTKSKCLVGICQIETLNFGLLQNILAG 389
                FC+Y+  T  K++I K + K    +CQIE LNFG L  IL G
Sbjct: 395 IDSDFFCFYHPLTEKKRIISKNQKKNRF-VCQIECLNFGSLPEILEG 423

[Close]

BLAST of CsaV3_1G028910 vs. TrEMBL
Match: tr|A0A0A0LSE0|A0A0A0LSE0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G011590 PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 6.1e-59
Identity = 159/409 (38.88%), Postives = 225/409 (55.01%), Query Frame = 0


Query: 1   MDTMTWGEGLPTDIAISIFSKLIISNLRVCRLVCKTWNAMVLDYAHSYK--LNNDFLLSV 60
           M+   W  GLP+DI  +IFSKL++SNL  CR+VCK WN ++LD+A S    L NDF+L  
Sbjct: 1   MEITDWVSGLPSDIGKTIFSKLLVSNLPACRVVCKAWNELILDHASSASKFLTNDFILFT 60

Query: 61  SDVV-PNPRSSWLCNARMYCFRSDPTKRLDVYLDFFELEGSKSAFSVPFDDGDWSRVTMM 120
            DV+ P P      N  M+C R D     ++                 F+ G   +  ++
Sbjct: 61  CDVLHPFPCPDNHTNPNMHCLRFD-----NLXXXXXXXXXXXXXXXXXFEAGVVYK--LI 120

Query: 121 CYCNGLLFVCKSKL-----NTVCHGIFNPTTNEFHHVPKIFCDIYHFGLGCIPSTKEYKL 180
             CNGLL + K  L       +  GIFNP TNEF  VP      YH+G G IP+TK+YKL
Sbjct: 121 NSCNGLLLIYKLPLCFPGEFLLRVGIFNPMTNEFFQVPHDEIVEYHYGFGFIPATKQYKL 180

Query: 181 FRATRSDLIMCRTQQESIRQRPITIIDVFDFGR--------NKWRQLHSLPYLIDDGGIY 240
           FR      +  R ++ +     ++ +DV  FGR        ++WR+L+SLP  +++ G +
Sbjct: 181 FRVNFP--LNVRPEEPN----SVSHLDVLTFGRSEIIDPKQSQWRRLYSLPGGVENHGAH 240

Query: 241 MDGVIYFVGKVKNKPNDYAIYALDVETEKIELSAVLKAGRGPSSSRSRILQSNGIVYAII 300
           ++GVIY++G+ K + N+Y +Y LDVETEKI+LSAVL+       S   I Q NG VYA+ 
Sbjct: 241 VNGVIYWLGEGKEQ-NEYVVYTLDVETEKIQLSAVLEVVNPMWMS---IQQFNGTVYAVF 300

Query: 301 YVNLPTTTTHSQVMQGVQVWRMQKKNSWIREFEIRKFVMNGMPGSIILIKA---EEVLCK 360
           ++            +  QVWRMQ+KNSWIR+F I          ++ L+KA    E+LC 
Sbjct: 301 HME-----------EATQVWRMQEKNSWIRDFVIDDC-------NLTLVKAYENGEMLCM 360

Query: 361 FGGSSFCWYNASTRTKKMIR-KTKSKCLVGICQIETLNFGLLQNILAGD 390
              + F  YN ST +KK++  + + K  +GIC +E LNFG L NILAGD
Sbjct: 361 VKPTVFWLYNPSTGSKKVLSLRNEKKIFLGICHLE-LNFGSLLNILAGD 373

The following BLAST results are available for this feature:

BLAST of CsaV3_1G028910 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65156.1	1.2e-71	59.16	hypothetical protein Csa_1G255670 [Cucumis sativus]	[more]
KGN65172.1	4.1e-67	42.36	hypothetical protein Csa_1G257290 [Cucumis sativus]	[more]
XP_008460183.1	7.0e-67	42.29	PREDICTED: uncharacterized protein LOC103499068 [Cucumis melo]	[more]
KGN63745.1	1.8e-62	40.79	hypothetical protein Csa_1G014420 [Cucumis sativus]	[more]
XP_011660339.1	9.2e-59	38.88	PREDICTED: putative F-box protein At1g32420 [Cucumis sativus] >KGN63707.1 hypoth...	[more]

BLAST of CsaV3_1G028910 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G53550.1	3.0e-11	25.28	F-box family protein	[more]
AT3G07870.1	3.9e-11	22.71	F-box and associated interaction domains-containing protein	[more]
AT1G33020.1	5.8e-07	23.32	F-box and associated interaction domains-containing protein	[more]
AT3G16210.1	1.9e-05	23.61	F-box family protein	[more]
AT2G38590.1	1.2e-04	22.61	F-box and associated interaction domains-containing protein	[more]

BLAST of CsaV3_1G028910 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LPH0\|FB57_ARATH	5.4e-10	25.28	Putative F-box protein At1g53550 OS=Arabidopsis thaliana OX=3702 GN=At1g53550 PE...	[more]
sp\|Q9SFC7\|FB135_ARATH	7.0e-10	22.71	F-box protein At3g07870 OS=Arabidopsis thaliana OX=3702 GN=At3g07870 PE=2 SV=1	[more]
sp\|Q9MAP1\|FB33_ARATH	1.0e-05	23.32	Putative F-box protein At1g33020 OS=Arabidopsis thaliana OX=3702 GN=At1g33020 PE...	[more]
sp\|Q9LU24\|FB145_ARATH	3.4e-04	23.61	Putative F-box protein At3g16210 OS=Arabidopsis thaliana OX=3702 GN=At3g16210 PE...	[more]

BLAST of CsaV3_1G028910 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LYU1\|A0A0A0LYU1_CUCSA	8.2e-72	59.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G255670 PE=4 SV=1	[more]
tr\|A0A0A0LWG1\|A0A0A0LWG1_CUCSA	2.7e-67	42.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G257290 PE=4 SV=1	[more]
tr\|A0A1S3CCE7\|A0A1S3CCE7_CUCME	4.6e-67	42.29	uncharacterized protein LOC103499068 OS=Cucumis melo OX=3656 GN=LOC103499068 PE=...	[more]
tr\|A0A0A0LPC6\|A0A0A0LPC6_CUCSA	1.2e-62	40.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G014420 PE=4 SV=1	[more]
tr\|A0A0A0LSE0\|A0A0A0LSE0_CUCSA	6.1e-59	38.88	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G011590 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036047	F-box-like_dom_sf
IPR011043	Gal_Oxase/kelch_b-propeller
IPR017451	F-box-assoc_interact_dom
IPR001810	F-box_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G028910.1	CsaV3_1G028910.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 10..50 e-value: 0.0029 score: 26.9
IPR001810	F-box domain	PFAM	PF12937	F-box-like	coord: 10..43 e-value: 3.2E-6 score: 26.8
IPR017451	F-box associated interaction domain	TIGRFAM	TIGR01640	TIGR01640	coord: 118..342 e-value: 6.9E-19 score: 66.1
None	No IPR available	GENE3D	G3DSA:1.20.1280.50		coord: 6..45 e-value: 3.1E-6 score: 29.0
None	No IPR available	PANTHER	PTHR31790	FAMILY NOT NAMED	coord: 4..360
IPR011043	Galactose oxidase/kelch, beta-propeller	SUPERFAMILY	SSF50965	Galactose oxidase, central domain	coord: 107..268
IPR036047	F-box-like domain superfamily	SUPERFAMILY	SSF81383	F-box domain	coord: 4..69

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G028910	CSPI01G17650	Wild cucumber (PI 183967)	cpicucB000

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G028910	Cucumber (Gy14) v2	cgybcucB165
CsaV3_1G028910	Cucumber (Gy14) v1	cgycucB413
CsaV3_1G028910	Cucurbita maxima (Rimu)	cmacucB0012
CsaV3_1G028910	Cucurbita maxima (Rimu)	cmacucB0067
CsaV3_1G028910	Cucurbita maxima (Rimu)	cmacucB0111
CsaV3_1G028910	Cucurbita maxima (Rimu)	cmacucB0517
CsaV3_1G028910	Cucurbita moschata (Rifu)	cmocucB0001
CsaV3_1G028910	Cucurbita moschata (Rifu)	cmocucB0054
CsaV3_1G028910	Cucurbita moschata (Rifu)	cmocucB0100
CsaV3_1G028910	Cucurbita pepo (Zucchini)	cpecucB0429
CsaV3_1G028910	Cucurbita pepo (Zucchini)	cpecucB0670
CsaV3_1G028910	Cucurbita pepo (Zucchini)	cpecucB0796
CsaV3_1G028910	Cucurbita pepo (Zucchini)	cpecucB0954
CsaV3_1G028910	Wild cucumber (PI 183967)	cpicucB204
CsaV3_1G028910	Bottle gourd (USVL1VR-Ls)	cuclsiB074
CsaV3_1G028910	Bottle gourd (USVL1VR-Ls)	cuclsiB085
CsaV3_1G028910	Melon (DHL92) v3.5.1	cucmeB054
CsaV3_1G028910	Melon (DHL92) v3.5.1	cucmeB086
CsaV3_1G028910	Melon (DHL92) v3.6.1	cucmedB052
CsaV3_1G028910	Melon (DHL92) v3.6.1	cucmedB081
CsaV3_1G028910	Watermelon (Charleston Gray)	cucwcgB073
CsaV3_1G028910	Watermelon (Charleston Gray)	cucwcgB074
CsaV3_1G028910	Watermelon (97103) v1	cucwmB047
CsaV3_1G028910	Watermelon (97103) v1	cucwmB091
CsaV3_1G028910	Watermelon (97103) v2	cucwmbB062
CsaV3_1G028910	Watermelon (97103) v2	cucwmbB063
CsaV3_1G028910	Wax gourd	cucwgoB081
CsaV3_1G028910	Wax gourd	cucwgoB104
CsaV3_1G028910	Cucumber (Chinese Long) v3	cuccucB032
CsaV3_1G028910	Silver-seed gourd	carcucB0142
CsaV3_1G028910	Silver-seed gourd	carcucB0537
CsaV3_1G028910	Cucumber (Gy14) v2	cgybcucB001