CsaV3_1G028440 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G028440
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 15469554 .. 15469721 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GATGTCTCAACAGTTCGGTATCATCTGTATGCCAATGGAATTGATAAGAGTTACAAGGTATGGATCTGGCATGGTGAAGAATTGAACTCAGATAACGTTGCCAACACGATGGAAACTACAGTGGATGAAACTGATGAAAACGACGATTTATTTAATACAATTAATATG

mRNA sequence

GATGTCTCAACAGTTCGGTATCATCTGTATGCCAATGGAATTGATAAGAGTTACAAGGTATGGATCTGGCATGGTGAAGAATTGAACTCAGATAACGTTGCCAACACGATGGAAACTACAGTGGATGAAACTGATGAAAACGACGATTTATTTAATACAATTAATATG

Coding sequence (CDS)

GATGTCTCAACAGTTCGGTATCATCTGTATGCCAATGGAATTGATAAGAGTTACAAGGTATGGATCTGGCATGGTGAAGAATTGAACTCAGATAACGTTGCCAACACGATGGAAACTACAGTGGATGAAACTGATGAAAACGACGATTTATTTAATACAATTAATATG

Protein sequence

DVSTVRYHLYANGIDKSYKVWIWHGEELNSDNVANTMETTVDETDENDDLFNTINM
Homology
[Close]
BLAST of CsaV3_1G028440 vs. NCBI nr
Match: XP_022150919.1 (uncharacterized protein LOC111018955 [Momordica charantia])

HSP 1 Score: 55.1 bits (131), Expect = 9.1e-05
Identity = 26/55 (47.27%), Postives = 35/55 (63.64%), Query Frame = 0 

Query: 2   VSTVRYHLYANGIDKSYKVWIWHGEELNSDNVANTMETTVDETDENDDLFNTINM 57
           V+ VR HL+  GID+SYK WIWHGE ++      +M T+  E  E+DD  +TI M
Sbjct: 63  VNVVRDHLFVYGIDQSYKTWIWHGESISIKRNIESMSTSAQEQVEDDDFDDTIGM 117

[Close]
BLAST of CsaV3_1G028440 vs. NCBI nr
Match: XP_022159378.1 (uncharacterized protein LOC111025795 [Momordica charantia])

HSP 1 Score: 54.7 bits (130), Expect = 1.2e-04
Identity = 24/48 (50.00%), Postives = 32/48 (66.67%), Query Frame = 0 

Query: 1  DVSTVRYHLYANGIDKSYKVWIWHGEELNSDNVANTMETTVDETDEND 49
          D++ VR HLY+NGID+SY VW WHGE+L +     T      E+DE+D
Sbjct: 50 DIAIVRDHLYSNGIDQSYXVWFWHGEDLGNIPAEQTYNNDALESDEDD 97

The following BLAST results are available for this feature:
BLAST of CsaV3_1G028440 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022150919.19.1e-0547.27uncharacterized protein LOC111018955 [Momordica charantia][more]
XP_022159378.11.2e-0450.00uncharacterized protein LOC111025795 [Momordica charantia][more]
BLAST of CsaV3_1G028440 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G028440 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G028440 vs. TrEMBL
Match NameE-valueIdentityDescription
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR029480Transpos_assoc
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G028440.1CsaV3_1G028440.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029480Transposase-associated domainPFAMPF13963Transpos_assoccoord: 3..26
e-value: 2.4E-6
score: 27.8

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G028440Cucumber (Chinese Long) v3cuccucB012
CsaV3_1G028440Silver-seed gourdcarcucB0142
CsaV3_1G028440Silver-seed gourdcarcucB0284
CsaV3_1G028440Silver-seed gourdcarcucB0609
CsaV3_1G028440Silver-seed gourdcarcucB1119
CsaV3_1G028440Cucumber (Gy14) v2cgybcucB001
CsaV3_1G028440Cucumber (Gy14) v2cgybcucB061
CsaV3_1G028440Cucumber (Gy14) v1cgycucB189
CsaV3_1G028440Cucumber (Gy14) v1cgycucB533
CsaV3_1G028440Cucurbita maxima (Rimu)cmacucB0067
CsaV3_1G028440Cucurbita maxima (Rimu)cmacucB0111
CsaV3_1G028440Cucurbita maxima (Rimu)cmacucB0187
CsaV3_1G028440Cucurbita maxima (Rimu)cmacucB0923
CsaV3_1G028440Cucurbita moschata (Rifu)cmocucB0054
CsaV3_1G028440Cucurbita moschata (Rifu)cmocucB0100
CsaV3_1G028440Cucurbita moschata (Rifu)cmocucB0171
CsaV3_1G028440Cucurbita moschata (Rifu)cmocucB0915
CsaV3_1G028440Cucurbita pepo (Zucchini)cpecucB0101
CsaV3_1G028440Cucurbita pepo (Zucchini)cpecucB0429
CsaV3_1G028440Cucurbita pepo (Zucchini)cpecucB0796
CsaV3_1G028440Cucurbita pepo (Zucchini)cpecucB1003
CsaV3_1G028440Wild cucumber (PI 183967)cpicucB000
CsaV3_1G028440Wild cucumber (PI 183967)cpicucB076
CsaV3_1G028440Bottle gourd (USVL1VR-Ls)cuclsiB012
CsaV3_1G028440Bottle gourd (USVL1VR-Ls)cuclsiB073
CsaV3_1G028440Bottle gourd (USVL1VR-Ls)cuclsiB084
CsaV3_1G028440Melon (DHL92) v3.5.1cucmeB054
CsaV3_1G028440Melon (DHL92) v3.5.1cucmeB076
CsaV3_1G028440Melon (DHL92) v3.6.1cucmedB052
CsaV3_1G028440Melon (DHL92) v3.6.1cucmedB069
CsaV3_1G028440Watermelon (Charleston Gray)cucwcgB074
CsaV3_1G028440Watermelon (97103) v1cucwmB091
CsaV3_1G028440Watermelon (97103) v2cucwmbB063
CsaV3_1G028440Wax gourdcucwgoB011
CsaV3_1G028440Wax gourdcucwgoB104