CsaV3_1G028290 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G028290
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr1 : 15353052 .. 15353335 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CATCGTCTGTAGCGGCTCGTCCACCGATGGTGGGAGCAGCAGCGCCTAGTAAGCCATTGGGAACGGAGGAATATTTCTCTTTGTTCCCATGCATATCATTAGTTCCTCAAGCTACAAAATGTGTTATTGATGTGCTTAACAATACGGTTGCTCCTCATCCTTCTTGTTGCGAAGCCATTTCTAAACTCAATGATTGTTCGTCCAACTTTCTCAAAGACATCCCCACAGGCGAAATGATTTTGGTTAAGAGCCTTTGTGCTTCATGGGGAGTTTCTATTCCTTAG

mRNA sequence

TCGTCTGTAGCGGCTCGTCCACCGATGGTGGGAGCAGCAGCGCCTAGTAAGCCATTGGGAACGGAGGAATATTTCTCTTTGTTCCCATGCATATCATTAGTTCCTCAAGCTACAAAATGTGTTATTGATGTGCTTAACAATACGGTTGCTCCTCATCCTTCTTGTTGCGAAGCCATTTCTAAACTCAATGATTGTTCGTCCAACTTTCTCAAAGACATCCCCACAGGCGAAATGATTTTGGTTAAGAGCCTTTGTGCTTCATGGGGAGTTTCTATTCCTTA

Coding sequence (CDS)

TCGTCTGTAGCGGCTCGTCCACCGATGGTGGGAGCAGCAGCGCCTAGTAAGCCATTGGGAACGGAGGAATATTTCTCTTTGTTCCCATGCATATCATTAGTTCCTCAAGCTACAAAATGTGTTATTGATGTGCTTAACAATACGGTTGCTCCTCATCCTTCTTGTTGCGAAGCCATTTCTAAACTCAATGATTGTTCGTCCAACTTTCTCAAAGACATCCCCACAGGCGAAATGATTTTGGTTAAGAGCCTTTGTGCTTCATGGGGAGTTTCTATTCCTTA

Protein sequence

SSVAARPPMVGAAAPSKPLGTEEYFSLFPCISLVPQATKCVIDVLNNTVAPHPSCCEAISKLNDCSSNFLKDIPTGEMILVKSLCASWGVSIPX

Homology

[Close]

BLAST of CsaV3_1G028290 vs. NCBI nr
Match: KGN65096.1 (hypothetical protein Csa_1G212820 [Cucumis sativus])

HSP 1 Score: 100.1 bits (248), Expect = 4.1e-18
Identity = 46/89 (51.69%), Postives = 61/89 (68.54%), Query Frame = 0


Query: 4   AARPPMVGAAAPSKPLGTEEYFSLFPCISLVPQATKCVIDVLNNTVAPHPSCCEAISKLN 63
           AA   +  A    +P  TE+  S FPC S VP+ATKC+IDV  + +A HP+CC+AISKL 
Sbjct: 28  AAAMKVAMAPTQPQPFPTED-ISFFPCFSFVPEATKCMIDVFKHPIAAHPTCCKAISKLK 87

Query: 64  DCSSNFLKDIPTGEMILVKSLCASWGVSI 93
            CSS+F   IP+ +MI++KS+C SWG SI
Sbjct: 88  SCSSSFFNGIPSADMIVIKSVCTSWGASI 115

[Close]

BLAST of CsaV3_1G028290 vs. NCBI nr
Match: KGN65195.1 (hypothetical protein Csa_1G263980 [Cucumis sativus])

HSP 1 Score: 76.6 bits (187), Expect = 4.9e-11
Identity = 35/88 (39.77%), Postives = 51/88 (57.95%), Query Frame = 0


Query: 2   SVAARPPMVGAAAPSKPLGTEEYFSLFPCISLVPQATKCVIDVLNNTVAPHPSCCEAISK 61
           ++ A P M           T++  S+  C     +ATKC+IDV+ N++ PHPSCC AI K
Sbjct: 16  AILALPVMTRTTTTLDQFSTKDVASV-NCTVFTFEATKCMIDVMKNSMPPHPSCCRAILK 75

Query: 62  LNDCSSNFLKDIPTGEMILVKSLCASWG 90
           LNDC+    KD+P+ +  L+K +C  WG
Sbjct: 76  LNDCNPEVYKDVPSTDKKLIKKICELWG 102

[Close]

BLAST of CsaV3_1G028290 vs. NCBI nr
Match: KGN65190.1 (hypothetical protein Csa_1G263450 [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 2.5e-07
Identity = 36/84 (42.86%), Postives = 49/84 (58.33%), Query Frame = 0


Query: 2   SVAARPPMVGAAAPSKPLGTEEYFSLFPCISLVPQATKCVIDVLNNTVAPHPSCCEAISK 61
           SV AR  M  A +P   L  E+  S   C   + +AT CV+DV+   VA HPSCC+AIS 
Sbjct: 28  SVTAR-TMAEAPSPVLVLFDEDDSSFSNCAPFILEATMCVVDVIKLPVASHPSCCKAISD 87

Query: 62  LNDCSSNFLKDIPTGEMILVKSLC 86
           LNDC+    + IP  +M ++K +C
Sbjct: 88  LNDCAPQIYQHIP--DMDVIKKIC 108

[Close]

BLAST of CsaV3_1G028290 vs. TrEMBL
Match: tr|A0A0A0LYQ3|A0A0A0LYQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G212820 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.7e-18
Identity = 46/89 (51.69%), Postives = 61/89 (68.54%), Query Frame = 0


Query: 4   AARPPMVGAAAPSKPLGTEEYFSLFPCISLVPQATKCVIDVLNNTVAPHPSCCEAISKLN 63
           AA   +  A    +P  TE+  S FPC S VP+ATKC+IDV  + +A HP+CC+AISKL 
Sbjct: 28  AAAMKVAMAPTQPQPFPTED-ISFFPCFSFVPEATKCMIDVFKHPIAAHPTCCKAISKLK 87

Query: 64  DCSSNFLKDIPTGEMILVKSLCASWGVSI 93
            CSS+F   IP+ +MI++KS+C SWG SI
Sbjct: 88  SCSSSFFNGIPSADMIVIKSVCTSWGASI 115

[Close]

BLAST of CsaV3_1G028290 vs. TrEMBL
Match: tr|A0A0A0LTE1|A0A0A0LTE1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263980 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.2e-11
Identity = 35/88 (39.77%), Postives = 51/88 (57.95%), Query Frame = 0


Query: 2   SVAARPPMVGAAAPSKPLGTEEYFSLFPCISLVPQATKCVIDVLNNTVAPHPSCCEAISK 61
           ++ A P M           T++  S+  C     +ATKC+IDV+ N++ PHPSCC AI K
Sbjct: 16  AILALPVMTRTTTTLDQFSTKDVASV-NCTVFTFEATKCMIDVMKNSMPPHPSCCRAILK 75

Query: 62  LNDCSSNFLKDIPTGEMILVKSLCASWG 90
           LNDC+    KD+P+ +  L+K +C  WG
Sbjct: 76  LNDCNPEVYKDVPSTDKKLIKKICELWG 102

[Close]

BLAST of CsaV3_1G028290 vs. TrEMBL
Match: tr|A0A0A0LTD6|A0A0A0LTD6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263450 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.7e-07
Identity = 36/84 (42.86%), Postives = 49/84 (58.33%), Query Frame = 0


Query: 2   SVAARPPMVGAAAPSKPLGTEEYFSLFPCISLVPQATKCVIDVLNNTVAPHPSCCEAISK 61
           SV AR  M  A +P   L  E+  S   C   + +AT CV+DV+   VA HPSCC+AIS 
Sbjct: 28  SVTAR-TMAEAPSPVLVLFDEDDSSFSNCAPFILEATMCVVDVIKLPVASHPSCCKAISD 87

Query: 62  LNDCSSNFLKDIPTGEMILVKSLC 86
           LNDC+    + IP  +M ++K +C
Sbjct: 88  LNDCAPQIYQHIP--DMDVIKKIC 108

The following BLAST results are available for this feature:

BLAST of CsaV3_1G028290 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65096.1	4.1e-18	51.69	hypothetical protein Csa_1G212820 [Cucumis sativus]	[more]
KGN65195.1	4.9e-11	39.77	hypothetical protein Csa_1G263980 [Cucumis sativus]	[more]
KGN65190.1	2.5e-07	42.86	hypothetical protein Csa_1G263450 [Cucumis sativus]	[more]

BLAST of CsaV3_1G028290 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G028290 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G028290 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LYQ3\|A0A0A0LYQ3_CUCSA	2.7e-18	51.69	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G212820 PE=4 SV=1	[more]
tr\|A0A0A0LTE1\|A0A0A0LTE1_CUCSA	3.2e-11	39.77	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263980 PE=4 SV=1	[more]
tr\|A0A0A0LTD6\|A0A0A0LTD6_CUCSA	1.7e-07	42.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263450 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G028290.1	CsaV3_1G028290.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G028290	Silver-seed gourd	carcucB0142
CsaV3_1G028290	Silver-seed gourd	carcucB0609
CsaV3_1G028290	Cucumber (Gy14) v2	cgybcucB001
CsaV3_1G028290	Cucurbita maxima (Rimu)	cmacucB0067
CsaV3_1G028290	Cucurbita maxima (Rimu)	cmacucB0111
CsaV3_1G028290	Cucurbita moschata (Rifu)	cmocucB0054
CsaV3_1G028290	Cucurbita moschata (Rifu)	cmocucB0100
CsaV3_1G028290	Cucurbita pepo (Zucchini)	cpecucB0429
CsaV3_1G028290	Cucurbita pepo (Zucchini)	cpecucB0796
CsaV3_1G028290	Wild cucumber (PI 183967)	cpicucB000
CsaV3_1G028290	Bottle gourd (USVL1VR-Ls)	cuclsiB073
CsaV3_1G028290	Bottle gourd (USVL1VR-Ls)	cuclsiB084
CsaV3_1G028290	Melon (DHL92) v3.5.1	cucmeB054
CsaV3_1G028290	Melon (DHL92) v3.6.1	cucmedB052
CsaV3_1G028290	Watermelon (Charleston Gray)	cucwcgB074
CsaV3_1G028290	Watermelon (97103) v1	cucwmB091
CsaV3_1G028290	Watermelon (97103) v2	cucwmbB063
CsaV3_1G028290	Wax gourd	cucwgoB104