CsaV3_1G028280 (gene) Cucumber (Chinese Long) v3

NameCsaV3_1G028280
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 15327508 .. 15327777 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGTGAAGTCACTGAAAGCATCCCCAATGAAGTTAGCCTTAGTATTCATTGTCTCCATAGCCATTTTAGCAGCATCCGCGACGGCCGGCCGCACGACGGTGTCGTCTACAACACTTGATCCATCAATCTCGCAAGATCTCTCCTTCTTCAGTTGTACTCCGTTTATTTTGGATGCGACACTGTGTTTGGTCGATGTATTCAAGTTTCCAATTGCTCCTCATCCCTTTTGTTGCAAAGCCATTTTTAAGCTCAATGACTGTGCTCCT

mRNA sequence

ATGGCAGTGAAGTCACTGAAAGCATCCCCAATGAAGTTAGCCTTAGTATTCATTGTCTCCATAGCCATTTTAGCAGCATCCGCGACGGCCGGCCGCACGACGGTGTCGTCTACAACACTTGATCCATCAATCTCGCAAGATCTCTCCTTCTTCAGTTGTACTCCGTTTATTTTGGATGCGACACTGTGTTTGGTCGATGTATTCAAGTTTCCAATTGCTCCTCATCCCTTTTGTTGCAAAGCCATTTTTAAGCTCAATGACTGTGCTCCT

Coding sequence (CDS)

ATGGCAGTGAAGTCACTGAAAGCATCCCCAATGAAGTTAGCCTTAGTATTCATTGTCTCCATAGCCATTTTAGCAGCATCCGCGACGGCCGGCCGCACGACGGTGTCGTCTACAACACTTGATCCATCAATCTCGCAAGATCTCTCCTTCTTCAGTTGTACTCCGTTTATTTTGGATGCGACACTGTGTTTGGTCGATGTATTCAAGTTTCCAATTGCTCCTCATCCCTTTTGTTGCAAAGCCATTTTTAAGCTCAATGACTGTGCTCCT

Protein sequence

MAVKSLKASPMKLALVFIVSIAILAASATAGRTTVSSTTLDPSISQDLSFFSCTPFILDATLCLVDVFKFPIAPHPFCCKAIFKLNDCAP
BLAST of CsaV3_1G028280 vs. NCBI nr
Match: KGN65096.1 (hypothetical protein Csa_1G212820 [Cucumis sativus])

HSP 1 Score: 84.3 bits (207), Expect = 2.2e-13
Identity = 46/89 (51.69%), Postives = 57/89 (64.04%), Query Frame = 0

Query: 1  MAVKSLKASPMKLALVFIVSIAILAASATAGRTTVSSTTLDPSISQDLSFFSCTPFILDA 60
          MA KSLK   MKL LVFI   AI A  A A +  ++ T   P  ++D+SFF C  F+ +A
Sbjct: 1  MAAKSLKTPTMKLILVFICCTAIFAPPAAAMKVAMAPTQPQPFPTEDISFFPCFSFVPEA 60

Query: 61 TLCLVDVFKFPIAPHPFCCKAIFKLNDCA 90
          T C++DVFK PIA HP CCKAI KL  C+
Sbjct: 61 TKCMIDVFKHPIAAHPTCCKAISKLKSCS 89

BLAST of CsaV3_1G028280 vs. NCBI nr
Match: KGN65190.1 (hypothetical protein Csa_1G263450 [Cucumis sativus])

HSP 1 Score: 84.3 bits (207), Expect = 2.2e-13
Identity = 51/91 (56.04%), Postives = 60/91 (65.93%), Query Frame = 0

Query: 2  AVKSLKASPMKLALVFIVSIAILAASATAGRTTVS--STTLDPSISQDLSFFSCTPFILD 61
          A KS  AS ++LA+VF+V I ILA S TA RT     S  L      D SF +C PFIL+
Sbjct: 3  ATKSTSASTIRLAIVFLVCIVILAPSVTA-RTMAEAPSPVLVLFDEDDSSFSNCAPFILE 62

Query: 62 ATLCLVDVFKFPIAPHPFCCKAIFKLNDCAP 91
          AT+C+VDV K P+A HP CCKAI  LNDCAP
Sbjct: 63 ATMCVVDVIKLPVASHPSCCKAISDLNDCAP 92

BLAST of CsaV3_1G028280 vs. NCBI nr
Match: KGN65195.1 (hypothetical protein Csa_1G263980 [Cucumis sativus])

HSP 1 Score: 69.7 bits (169), Expect = 5.7e-09
Identity = 37/80 (46.25%), Postives = 53/80 (66.25%), Query Frame = 0

Query: 11 MKLALVFIVSIAILAASATAGRTTVSSTTLDPSISQDLSFFSCTPFILDATLCLVDVFKF 70
          +KL ++F+V IAILA        T ++TTLD   ++D++  +CT F  +AT C++DV K 
Sbjct: 5  LKLPIIFLVCIAILALPV----MTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMKN 64

Query: 71 PIAPHPFCCKAIFKLNDCAP 91
           + PHP CC+AI KLNDC P
Sbjct: 65 SMPPHPSCCRAILKLNDCNP 80

BLAST of CsaV3_1G028280 vs. TrEMBL
Match: tr|A0A0A0LTD6|A0A0A0LTD6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263450 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.5e-13
Identity = 51/91 (56.04%), Postives = 60/91 (65.93%), Query Frame = 0

Query: 2  AVKSLKASPMKLALVFIVSIAILAASATAGRTTVS--STTLDPSISQDLSFFSCTPFILD 61
          A KS  AS ++LA+VF+V I ILA S TA RT     S  L      D SF +C PFIL+
Sbjct: 3  ATKSTSASTIRLAIVFLVCIVILAPSVTA-RTMAEAPSPVLVLFDEDDSSFSNCAPFILE 62

Query: 62 ATLCLVDVFKFPIAPHPFCCKAIFKLNDCAP 91
          AT+C+VDV K P+A HP CCKAI  LNDCAP
Sbjct: 63 ATMCVVDVIKLPVASHPSCCKAISDLNDCAP 92

BLAST of CsaV3_1G028280 vs. TrEMBL
Match: tr|A0A0A0LYQ3|A0A0A0LYQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G212820 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.5e-13
Identity = 46/89 (51.69%), Postives = 57/89 (64.04%), Query Frame = 0

Query: 1  MAVKSLKASPMKLALVFIVSIAILAASATAGRTTVSSTTLDPSISQDLSFFSCTPFILDA 60
          MA KSLK   MKL LVFI   AI A  A A +  ++ T   P  ++D+SFF C  F+ +A
Sbjct: 1  MAAKSLKTPTMKLILVFICCTAIFAPPAAAMKVAMAPTQPQPFPTEDISFFPCFSFVPEA 60

Query: 61 TLCLVDVFKFPIAPHPFCCKAIFKLNDCA 90
          T C++DVFK PIA HP CCKAI KL  C+
Sbjct: 61 TKCMIDVFKHPIAAHPTCCKAISKLKSCS 89

BLAST of CsaV3_1G028280 vs. TrEMBL
Match: tr|A0A0A0LTE1|A0A0A0LTE1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263980 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.8e-09
Identity = 37/80 (46.25%), Postives = 53/80 (66.25%), Query Frame = 0

Query: 11 MKLALVFIVSIAILAASATAGRTTVSSTTLDPSISQDLSFFSCTPFILDATLCLVDVFKF 70
          +KL ++F+V IAILA        T ++TTLD   ++D++  +CT F  +AT C++DV K 
Sbjct: 5  LKLPIIFLVCIAILALPV----MTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMKN 64

Query: 71 PIAPHPFCCKAIFKLNDCAP 91
           + PHP CC+AI KLNDC P
Sbjct: 65 SMPPHPSCCRAILKLNDCNP 80

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN65096.12.2e-1351.69hypothetical protein Csa_1G212820 [Cucumis sativus][more]
KGN65190.12.2e-1356.04hypothetical protein Csa_1G263450 [Cucumis sativus][more]
KGN65195.15.7e-0946.25hypothetical protein Csa_1G263980 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0LTD6|A0A0A0LTD6_CUCSA1.5e-1356.04Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263450 PE=4 SV=1[more]
tr|A0A0A0LYQ3|A0A0A0LYQ3_CUCSA1.5e-1351.69Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G212820 PE=4 SV=1[more]
tr|A0A0A0LTE1|A0A0A0LTE1_CUCSA3.8e-0946.25Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263980 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G028280.1CsaV3_1G028280.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None