CsaV3_1G028150 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G028150
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr1 : 15264194 .. 15264932 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTTAGTCCCCATTTTCTCACACCAACCAAAAACACAGCCTCAGTCCTCACTACTGTTTCTAATTCAATCCTTCTCTTAATTAACCATTTTCACACTGCCAATTGAAATAACCATGGCCTCAATGAAGCTACCACTTGTATTCTTAGTTTGCATAGCCATTTTAGCAGTATCTGGCATGGCACACACCGGAGCATTAGCACCTGCTGATCCGTTCACAGCAGAGGAATTCTCATTGCTGGGTTGCACATCCTTCATTTCTGAGGCAACAAACTGTATGGTTGATGTAATGAAAAATGCAGTTGCTCCTCATCCATCATGTTGCAAAGCATTTTCTAAGCTCAATGACTGTTCTTCTGAGTTTCTCAAAGGCATTCCCTCAGCTGACATGATTTTGATTAAAGGCATTTGTGCTTTGTGGGGTGTTTGATCAATTTCTTAGAATAAAGCATGTTTTAGTTAATAATAGGATCATTACGAATAACAACATTATCATTTTTCCCCTACATATTTTATAATTTGAAGGAAGAGTGAATTTTGTTAGAGGGAAAAGGTGTTGTTTAATTTGATCCGTTAATTGAATGAGAACTAACATTTTGTTACTGTTTGTCAAAGCCCATTTAGTTTGTAATTTTGAACACTCCACCCCTCTAAACTTCTGAAACCAACATAAATTAAATTACAAATTTTTTGCTGAGTATATAGTCTCAATTGAAATAACTATACTCATGTTGTCTTGAC

mRNA sequence

ATGGCCTCAATGAAGCTACCACTTGTATTCTTAGTTTGCATAGCCATTTTAGCAGTATCTGGCATGGCACACACCGGAGCATTAGCACCTGCTGATCCGTTCACAGCAGAGGAATTCTCATTGCTGGGTTGCACATCCTTCATTTCTGAGGCAACAAACTGTATGGTTGATGTAATGAAAAATGCAGTTGCTCCTCATCCATCATGTTGCAAAGCATTTTCTAAGCTCAATGACTGTTCTTCTGAGTTTCTCAAAGGCATTCCCTCAGCTGACATGATTTTGATTAAAGGCATTTGTGCTTTGTGGGGTGTTTGA

Coding sequence (CDS)

ATGGCCTCAATGAAGCTACCACTTGTATTCTTAGTTTGCATAGCCATTTTAGCAGTATCTGGCATGGCACACACCGGAGCATTAGCACCTGCTGATCCGTTCACAGCAGAGGAATTCTCATTGCTGGGTTGCACATCCTTCATTTCTGAGGCAACAAACTGTATGGTTGATGTAATGAAAAATGCAGTTGCTCCTCATCCATCATGTTGCAAAGCATTTTCTAAGCTCAATGACTGTTCTTCTGAGTTTCTCAAAGGCATTCCCTCAGCTGACATGATTTTGATTAAAGGCATTTGTGCTTTGTGGGGTGTTTGA

Protein sequence

MASMKLPLVFLVCIAILAVSGMAHTGALAPADPFTAEEFSLLGCTSFISEATNCMVDVMKNAVAPHPSCCKAFSKLNDCSSEFLKGIPSADMILIKGICALWGV

Homology

[Close]

BLAST of CsaV3_1G028150 vs. NCBI nr
Match: KGN65195.1 (hypothetical protein Csa_1G263980 [Cucumis sativus])

HSP 1 Score: 116.7 bits (291), Expect = 4.8e-23
Identity = 56/103 (54.37%), Postives = 72/103 (69.90%), Query Frame = 0


Query: 1   MASMKLPLVFLVCIAILAVSGMAHTGALAPADPFTAEEFSLLGCTSFISEATNCMVDVMK 60
           +AS+KLP++FLVCIAILA+  M  T      D F+ ++ + + CT F  EAT CM+DVMK
Sbjct: 2   VASLKLPIIFLVCIAILALPVMTRT--TTTLDQFSTKDVASVNCTVFTFEATKCMIDVMK 61

Query: 61  NAVAPHPSCCKAFSKLNDCSSEFLKGIPSADMILIKGICALWG 104
           N++ PHPSCC+A  KLNDC+ E  K +PS D  LIK IC LWG
Sbjct: 62  NSMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWG 102

[Close]

BLAST of CsaV3_1G028150 vs. NCBI nr
Match: KGN65096.1 (hypothetical protein Csa_1G212820 [Cucumis sativus])

HSP 1 Score: 115.2 bits (287), Expect = 1.4e-22
Identity = 56/103 (54.37%), Postives = 67/103 (65.05%), Query Frame = 0


Query: 3   SMKLPLVFLVCIAILAVSGMAHTGALAPA--DPFTAEEFSLLGCTSFISEATNCMVDVMK 62
           +MKL LVF+ C AI A    A   A+AP    PF  E+ S   C SF+ EAT CM+DV K
Sbjct: 10  TMKLILVFICCTAIFAPPAAAMKVAMAPTQPQPFPTEDISFFPCFSFVPEATKCMIDVFK 69

Query: 63  NAVAPHPSCCKAFSKLNDCSSEFLKGIPSADMILIKGICALWG 104
           + +A HP+CCKA SKL  CSS F  GIPSADMI+IK +C  WG
Sbjct: 70  HPIAAHPTCCKAISKLKSCSSSFFNGIPSADMIVIKSVCTSWG 112

[Close]

BLAST of CsaV3_1G028150 vs. NCBI nr
Match: KGN65190.1 (hypothetical protein Csa_1G263450 [Cucumis sativus])

HSP 1 Score: 89.0 bits (219), Expect = 1.1e-14
Identity = 52/103 (50.49%), Postives = 66/103 (64.08%), Query Frame = 0


Query: 2   ASMKLPLVFLVCIAILAVSGMAHTGALAPADP---FTAEEFSLLGCTSFISEATNCMVDV 61
           ++++L +VFLVCI ILA S  A T A AP+     F  ++ S   C  FI EAT C+VDV
Sbjct: 10  STIRLAIVFLVCIVILAPSVTARTMAEAPSPVLVLFDEDDSSFSNCAPFILEATMCVVDV 69

Query: 62  MKNAVAPHPSCCKAFSKLNDCSSEFLKGIPSADMILIKGICAL 102
           +K  VA HPSCCKA S LNDC+ +  + IP  DM +IK IC L
Sbjct: 70  IKLPVASHPSCCKAISDLNDCAPQIYQHIP--DMDVIKKICGL 110

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BLAST of CsaV3_1G028150 vs. TrEMBL
Match: tr|A0A0A0LTE1|A0A0A0LTE1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263980 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.1e-23
Identity = 56/103 (54.37%), Postives = 72/103 (69.90%), Query Frame = 0


Query: 1   MASMKLPLVFLVCIAILAVSGMAHTGALAPADPFTAEEFSLLGCTSFISEATNCMVDVMK 60
           +AS+KLP++FLVCIAILA+  M  T      D F+ ++ + + CT F  EAT CM+DVMK
Sbjct: 2   VASLKLPIIFLVCIAILALPVMTRT--TTTLDQFSTKDVASVNCTVFTFEATKCMIDVMK 61

Query: 61  NAVAPHPSCCKAFSKLNDCSSEFLKGIPSADMILIKGICALWG 104
           N++ PHPSCC+A  KLNDC+ E  K +PS D  LIK IC LWG
Sbjct: 62  NSMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWG 102

[Close]

BLAST of CsaV3_1G028150 vs. TrEMBL
Match: tr|A0A0A0LYQ3|A0A0A0LYQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G212820 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 9.2e-23
Identity = 56/103 (54.37%), Postives = 67/103 (65.05%), Query Frame = 0


Query: 3   SMKLPLVFLVCIAILAVSGMAHTGALAPA--DPFTAEEFSLLGCTSFISEATNCMVDVMK 62
           +MKL LVF+ C AI A    A   A+AP    PF  E+ S   C SF+ EAT CM+DV K
Sbjct: 10  TMKLILVFICCTAIFAPPAAAMKVAMAPTQPQPFPTEDISFFPCFSFVPEATKCMIDVFK 69

Query: 63  NAVAPHPSCCKAFSKLNDCSSEFLKGIPSADMILIKGICALWG 104
           + +A HP+CCKA SKL  CSS F  GIPSADMI+IK +C  WG
Sbjct: 70  HPIAAHPTCCKAISKLKSCSSSFFNGIPSADMIVIKSVCTSWG 112

[Close]

BLAST of CsaV3_1G028150 vs. TrEMBL
Match: tr|A0A0A0LTD6|A0A0A0LTD6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263450 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 7.0e-15
Identity = 52/103 (50.49%), Postives = 66/103 (64.08%), Query Frame = 0


Query: 2   ASMKLPLVFLVCIAILAVSGMAHTGALAPADP---FTAEEFSLLGCTSFISEATNCMVDV 61
           ++++L +VFLVCI ILA S  A T A AP+     F  ++ S   C  FI EAT C+VDV
Sbjct: 10  STIRLAIVFLVCIVILAPSVTARTMAEAPSPVLVLFDEDDSSFSNCAPFILEATMCVVDV 69

Query: 62  MKNAVAPHPSCCKAFSKLNDCSSEFLKGIPSADMILIKGICAL 102
           +K  VA HPSCCKA S LNDC+ +  + IP  DM +IK IC L
Sbjct: 70  IKLPVASHPSCCKAISDLNDCAPQIYQHIP--DMDVIKKICGL 110

The following BLAST results are available for this feature:

BLAST of CsaV3_1G028150 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65195.1	4.8e-23	54.37	hypothetical protein Csa_1G263980 [Cucumis sativus]	[more]
KGN65096.1	1.4e-22	54.37	hypothetical protein Csa_1G212820 [Cucumis sativus]	[more]
KGN65190.1	1.1e-14	50.49	hypothetical protein Csa_1G263450 [Cucumis sativus]	[more]

BLAST of CsaV3_1G028150 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G028150 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G028150 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LTE1\|A0A0A0LTE1_CUCSA	3.1e-23	54.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263980 PE=4 SV=1	[more]
tr\|A0A0A0LYQ3\|A0A0A0LYQ3_CUCSA	9.2e-23	54.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G212820 PE=4 SV=1	[more]
tr\|A0A0A0LTD6\|A0A0A0LTD6_CUCSA	7.0e-15	50.49	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263450 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G028150.1	CsaV3_1G028150.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G028150	Bhi02G000741	Wax gourd	cucwgoB104

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G028150	Silver-seed gourd	carcucB0142
CsaV3_1G028150	Silver-seed gourd	carcucB0609
CsaV3_1G028150	Cucumber (Gy14) v2	cgybcucB001
CsaV3_1G028150	Cucurbita maxima (Rimu)	cmacucB0067
CsaV3_1G028150	Cucurbita maxima (Rimu)	cmacucB0111
CsaV3_1G028150	Cucurbita moschata (Rifu)	cmocucB0054
CsaV3_1G028150	Cucurbita moschata (Rifu)	cmocucB0100
CsaV3_1G028150	Cucurbita pepo (Zucchini)	cpecucB0429
CsaV3_1G028150	Cucurbita pepo (Zucchini)	cpecucB0796
CsaV3_1G028150	Wild cucumber (PI 183967)	cpicucB000
CsaV3_1G028150	Bottle gourd (USVL1VR-Ls)	cuclsiB073
CsaV3_1G028150	Bottle gourd (USVL1VR-Ls)	cuclsiB084
CsaV3_1G028150	Melon (DHL92) v3.5.1	cucmeB054
CsaV3_1G028150	Melon (DHL92) v3.6.1	cucmedB052
CsaV3_1G028150	Watermelon (Charleston Gray)	cucwcgB074
CsaV3_1G028150	Watermelon (97103) v1	cucwmB091
CsaV3_1G028150	Watermelon (97103) v2	cucwmbB063