CsaV3_1G027930 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G027930
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr1 : 14844795 .. 14844995 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CATCCAGTGAGAAAATTACGCAAGCTCTATATCTGTAACAGGCAGCAAAATCCCATCAAAATTCAGTCCATCAAAGTACCTCCCAGTAGTTGCACAGAAGCAATAGAAGTTAGGAGCAAAGGCATCGCCGGCGAAGGAAAGAAGAAAAAGGAATTGGATAAGAAGGAATTGAAAAATGGAAGAATGATGGAGAGAAATCCG

mRNA sequence

CATCCAGTGAGAAAATTACGCAAGCTCTATATCTGTAACAGGCAGCAAAATCCCATCAAAATTCAGTCCATCAAAGTACCTCCCAGTAGTTGCACAGAAGCAATAGAAGTTAGGAGCAAAGGCATCGCCGGCGAAGGAAAGAAGAAAAAGGAATTGGATAAGAAGGAATTGAAAAATGGAAGAATGATGGAGAGAAATCCG

Coding sequence (CDS)

CATCCAGTGAGAAAATTACGCAAGCTCTATATCTGTAACAGGCAGCAAAATCCCATCAAAATTCAGTCCATCAAAGTACCTCCCAGTAGTTGCACAGAAGCAATAGAAGTTAGGAGCAAAGGCATCGCCGGCGAAGGAAAGAAGAAAAAGGAATTGGATAAGAAGGAATTGAAAAATGGAAGAATGATGGAGAGAAATCCG

Protein sequence

HPVRKLRKLYICNRQQNPIKIQSIKVPPSSCTEAIEVRSKGIAGEGKKKKELDKKELKNGRMMERNP

Homology

[Close]

BLAST of CsaV3_1G027930 vs. NCBI nr
Match: KGN65110.1 (hypothetical protein Csa_1G225400 [Cucumis sativus])

HSP 1 Score: 104.8 bits (260), Expect = 1.2e-19
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 14 RQQNPIKIQSIKVPPSSCTEAIEVRSKGIAGEGKKKKELDKKELKNGRMMERNP 68
          RQQNPIKIQSIKVPPSSCTEAIEVRSKGIAGEGKKKKELDKKELKNGRMMERNP
Sbjct: 14 RQQNPIKIQSIKVPPSSCTEAIEVRSKGIAGEGKKKKELDKKELKNGRMMERNP 67

[Close]

BLAST of CsaV3_1G027930 vs. TrEMBL
Match: tr|A0A0A0LT79|A0A0A0LT79_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G225400 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 7.9e-20
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 14 RQQNPIKIQSIKVPPSSCTEAIEVRSKGIAGEGKKKKELDKKELKNGRMMERNP 68
          RQQNPIKIQSIKVPPSSCTEAIEVRSKGIAGEGKKKKELDKKELKNGRMMERNP
Sbjct: 14 RQQNPIKIQSIKVPPSSCTEAIEVRSKGIAGEGKKKKELDKKELKNGRMMERNP 67

The following BLAST results are available for this feature:

BLAST of CsaV3_1G027930 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65110.1	1.2e-19	100.00	hypothetical protein Csa_1G225400 [Cucumis sativus]	[more]

BLAST of CsaV3_1G027930 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G027930 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G027930 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LT79\|A0A0A0LT79_CUCSA	7.9e-20	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G225400 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G027930.1	CsaV3_1G027930.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..67

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G027930	Silver-seed gourd	carcucB0142
CsaV3_1G027930	Cucumber (Gy14) v2	cgybcucB001
CsaV3_1G027930	Cucumber (Gy14) v1	cgycucB379
CsaV3_1G027930	Cucurbita maxima (Rimu)	cmacucB0067
CsaV3_1G027930	Cucurbita maxima (Rimu)	cmacucB0111
CsaV3_1G027930	Cucurbita moschata (Rifu)	cmocucB0054
CsaV3_1G027930	Cucurbita moschata (Rifu)	cmocucB0100
CsaV3_1G027930	Cucurbita pepo (Zucchini)	cpecucB0429
CsaV3_1G027930	Cucurbita pepo (Zucchini)	cpecucB0796
CsaV3_1G027930	Wild cucumber (PI 183967)	cpicucB011
CsaV3_1G027930	Bottle gourd (USVL1VR-Ls)	cuclsiB073
CsaV3_1G027930	Melon (DHL92) v3.5.1	cucmeB054
CsaV3_1G027930	Melon (DHL92) v3.6.1	cucmedB052
CsaV3_1G027930	Watermelon (Charleston Gray)	cucwcgB074
CsaV3_1G027930	Watermelon (97103) v1	cucwmB091
CsaV3_1G027930	Watermelon (97103) v2	cucwmbB063
CsaV3_1G027930	Wax gourd	cucwgoB104