CsaV3_1G027840 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G027840
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Cold-regulated protein, putative
Location	chr1 : 14727891 .. 14728510 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGTGAGACTCGGCGTTCCGATCTGCATCGAGTGTGGAACCCATAGGAACCCGTGCAGGTGCAGGTTGGTTGGGCCGAGCCTGGGGTTCTTAGCCTTGGTTGTGACGGCGGTGGTGGAGTGGCCCGTCGGAGCTCTGGTTTACTTATTCCGCCACCACAAAGGCCGCCGTATCATGGGTCATCCGGTCACCGTTGTTTACCCTTCCGTGTCTAATGCGATTCCTATTTGAGAAACTTTTTGTTATTTTCTTTTCTTTTAGTATAAATGGGACAAGCTCAAGAAGCTTTGTGATCATAAATTCTGGTCCTGTCTTTTTCTTACATAAATAAATAAAGTTAAATTCAGTTAATTTTAGATAAAGTAAAAACGTTGGGAATTATACAATTAATTGTTGTTAGGATATGATGTTAAAATGGTACTTTCAAATGGAATCATAATGTTTAATGTTGGGGATTGATTCTTGTTCATATGTATAATAAATGTTATGTAAAAGAAATGATCAACACAAATTATTTAAGCAAAGAAAGCACGCCCCCAACAAAACATAGCAACATTATTGAGAAGATAACATCTTGATATTAAGTCTGCAGTTTCGATTACGGGAATTCCGATTAG

mRNA sequence

ATGGGTGTGAGACTCGGCGTTCCGATCTGCATCGAGTGTGGAACCCATAGGAACCCGTGCAGGTGCAGGTTGGTTGGGCCGAGCCTGGGGTTCTTAGCCTTGGTTGTGACGGCGGTGGTGGAGTGGCCCGTCGGAGCTCTGGTTTACTTATTCCGCCACCACAAAGGCCGCCGTATCATGGGTCATCCGGTCACCGTTGTTTACCCTTCCGTTTTCGATTACGGGAATTCCGATTAG

Coding sequence (CDS)

ATGGGTGTGAGACTCGGCGTTCCGATCTGCATCGAGTGTGGAACCCATAGGAACCCGTGCAGGTGCAGGTTGGTTGGGCCGAGCCTGGGGTTCTTAGCCTTGGTTGTGACGGCGGTGGTGGAGTGGCCCGTCGGAGCTCTGGTTTACTTATTCCGCCACCACAAAGGCCGCCGTATCATGGGTCATCCGGTCACCGTTGTTTACCCTTCCGTTTTCGATTACGGGAATTCCGATTAG

Protein sequence

MGVRLGVPICIECGTHRNPCRCRLVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIMGHPVTVVYPSVFDYGNSD

Homology

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BLAST of CsaV3_1G027840 vs. NCBI nr
Match: XP_004150936.1 (PREDICTED: uncharacterized protein LOC101215155 [Cucumis sativus] >KGN57845.1 hypothetical protein Csa_3G346920 [Cucumis sativus])

HSP 1 Score: 156.4 bits (394), Expect = 4.1e-35
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MGVRLGVPICIECGTHRNPCRCRLVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60
          MGVRLGVPICIECGTHRNPCRCRLVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM
Sbjct: 1  MGVRLGVPICIECGTHRNPCRCRLVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60

Query: 61 GHPVTVVYPSV 72
          GHPVTVVYPSV
Sbjct: 61 GHPVTVVYPSV 71

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BLAST of CsaV3_1G027840 vs. NCBI nr
Match: XP_023528466.1 (uncharacterized protein LOC111791385 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 137.5 bits (345), Expect = 2.0e-29
Identity = 59/71 (83.10%), Postives = 64/71 (90.14%), Query Frame = 0


Query: 1  MGVRLGVPICIECGTHRNPCRCRLVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60
          M V +GVPIC+ECGTHRNPCRC++VGP+LGFLA  V AVVEWPVGALVY FRHHKGRRIM
Sbjct: 1  MAVGIGVPICVECGTHRNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVYCFRHHKGRRIM 60

Query: 61 GHPVTVVYPSV 72
           HPVTVVYPSV
Sbjct: 61 AHPVTVVYPSV 71

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BLAST of CsaV3_1G027840 vs. NCBI nr
Match: XP_022935253.1 (uncharacterized protein LOC111442190 [Cucurbita moschata])

HSP 1 Score: 137.1 bits (344), Expect = 2.6e-29
Identity = 58/71 (81.69%), Postives = 64/71 (90.14%), Query Frame = 0


Query: 1  MGVRLGVPICIECGTHRNPCRCRLVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60
          M V +GVP+C+ECGTHRNPCRC++VGP+LGFLA  V AVVEWPVGALVY FRHHKGRRIM
Sbjct: 1  MAVGIGVPVCVECGTHRNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVYCFRHHKGRRIM 60

Query: 61 GHPVTVVYPSV 72
           HPVTVVYPSV
Sbjct: 61 AHPVTVVYPSV 71

[Close]

BLAST of CsaV3_1G027840 vs. NCBI nr
Match: XP_004150937.1 (PREDICTED: uncharacterized protein LOC101215398 [Cucumis sativus] >KGN57844.1 hypothetical protein Csa_3G346910 [Cucumis sativus])

HSP 1 Score: 134.8 bits (338), Expect = 1.3e-28
Identity = 58/71 (81.69%), Postives = 63/71 (88.73%), Query Frame = 0


Query: 1  MGVRLGVPICIECGTHRNPCRCRLVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60
          MGV +GVPICIECGTH NPCRC++VGP+LGFLA  V AVVEWPVGALV+ FRHHKGRRIM
Sbjct: 1  MGVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60

Query: 61 GHPVTVVYPSV 72
           HP TVVYPSV
Sbjct: 61 AHPATVVYPSV 71

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BLAST of CsaV3_1G027840 vs. NCBI nr
Match: XP_008457074.1 (PREDICTED: uncharacterized protein LOC103496842 [Cucumis melo])

HSP 1 Score: 132.1 bits (331), Expect = 8.2e-28
Identity = 57/71 (80.28%), Postives = 62/71 (87.32%), Query Frame = 0


Query: 1  MGVRLGVPICIECGTHRNPCRCRLVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60
          M V +GVPICIECGTH NPCRC++VGP+LGFLA  V AVVEWPVGALV+ FRHHKGRRIM
Sbjct: 1  MAVGVGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60

Query: 61 GHPVTVVYPSV 72
           HP TVVYPSV
Sbjct: 61 AHPATVVYPSV 71

[Close]

BLAST of CsaV3_1G027840 vs. TAIR10
Match: AT3G03341.1 (unknown protein)

HSP 1 Score: 110.2 bits (274), Expect = 6.1e-25
Identity = 44/65 (67.69%), Postives = 54/65 (83.08%), Query Frame = 0


Query: 7  VPICIECGTHRNPCRCRLVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIMGHPVTV 66
          +PIC++CGT  NPCRC++VGP+LG +A V   +VEWPVGALVY+F+H KGRRIMGHP T 
Sbjct: 2  IPICVQCGTGGNPCRCKVVGPTLGLVAFVAAGIVEWPVGALVYIFKHAKGRRIMGHPATH 61

Query: 67 VYPSV 72
          VYP V
Sbjct: 62 VYPKV 66

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BLAST of CsaV3_1G027840 vs. TrEMBL
Match: tr|A0A0A0L786|A0A0A0L786_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G346920 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 2.7e-35
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MGVRLGVPICIECGTHRNPCRCRLVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60
          MGVRLGVPICIECGTHRNPCRCRLVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM
Sbjct: 1  MGVRLGVPICIECGTHRNPCRCRLVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60

Query: 61 GHPVTVVYPSV 72
          GHPVTVVYPSV
Sbjct: 61 GHPVTVVYPSV 71

[Close]

BLAST of CsaV3_1G027840 vs. TrEMBL
Match: tr|A0A0A0LA45|A0A0A0LA45_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G346910 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 8.4e-29
Identity = 58/71 (81.69%), Postives = 63/71 (88.73%), Query Frame = 0


Query: 1  MGVRLGVPICIECGTHRNPCRCRLVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60
          MGV +GVPICIECGTH NPCRC++VGP+LGFLA  V AVVEWPVGALV+ FRHHKGRRIM
Sbjct: 1  MGVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60

Query: 61 GHPVTVVYPSV 72
           HP TVVYPSV
Sbjct: 61 AHPATVVYPSV 71

[Close]

BLAST of CsaV3_1G027840 vs. TrEMBL
Match: tr|A0A1S3C5C8|A0A1S3C5C8_CUCME (uncharacterized protein LOC103496842 OS=Cucumis melo OX=3656 GN=LOC103496842 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 5.4e-28
Identity = 57/71 (80.28%), Postives = 62/71 (87.32%), Query Frame = 0


Query: 1  MGVRLGVPICIECGTHRNPCRCRLVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60
          M V +GVPICIECGTH NPCRC++VGP+LGFLA  V AVVEWPVGALV+ FRHHKGRRIM
Sbjct: 1  MAVGVGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60

Query: 61 GHPVTVVYPSV 72
           HP TVVYPSV
Sbjct: 61 AHPATVVYPSV 71

[Close]

BLAST of CsaV3_1G027840 vs. TrEMBL
Match: tr|A0A1S3C5Z5|A0A1S3C5Z5_CUCME (uncharacterized protein LOC103496843 OS=Cucumis melo OX=3656 GN=LOC103496843 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 7.9e-27
Identity = 62/71 (87.32%), Postives = 63/71 (88.73%), Query Frame = 0


Query: 1  MGVRLGVPICIECGTHRNPCRCRLVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60
          MGV LGVP CI CGT RNPCRCR+VGPSLGFLALVVTAVVEWPVGALVYLFRH    RIM
Sbjct: 1  MGVGLGVPFCIGCGTLRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRH----RIM 60

Query: 61 GHPVTVVYPSV 72
          GHPVTVVYPSV
Sbjct: 61 GHPVTVVYPSV 67

[Close]

BLAST of CsaV3_1G027840 vs. TrEMBL
Match: tr|A0A072UXZ4|A0A072UXZ4_MEDTR (Cold-regulated protein, putative OS=Medicago truncatula OX=3880 GN=25489285 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 2.5e-25
Identity = 50/69 (72.46%), Postives = 60/69 (86.96%), Query Frame = 0


Query: 3  VRLGVPICIECGTHRNPCRCRLVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIMGH 62
          VR GVP+C++CGT  NPCRC++VGP++GF+A VV  VVEWPVGALVY+F+H KGRRIMGH
Sbjct: 2  VRRGVPLCVQCGTRSNPCRCKVVGPTIGFVAFVVAGVVEWPVGALVYIFKHRKGRRIMGH 61

Query: 63 PVTVVYPSV 72
          P TVVYP V
Sbjct: 62 PATVVYPKV 70

The following BLAST results are available for this feature:

BLAST of CsaV3_1G027840 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150936.1	4.1e-35	100.00	PREDICTED: uncharacterized protein LOC101215155 [Cucumis sativus] >KGN57845.1 hy...	[more]
XP_023528466.1	2.0e-29	83.10	uncharacterized protein LOC111791385 [Cucurbita pepo subsp. pepo]	[more]
XP_022935253.1	2.6e-29	81.69	uncharacterized protein LOC111442190 [Cucurbita moschata]	[more]
XP_004150937.1	1.3e-28	81.69	PREDICTED: uncharacterized protein LOC101215398 [Cucumis sativus] >KGN57844.1 hy...	[more]
XP_008457074.1	8.2e-28	80.28	PREDICTED: uncharacterized protein LOC103496842 [Cucumis melo]	[more]

BLAST of CsaV3_1G027840 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G03341.1	6.1e-25	67.69	unknown protein	[more]

BLAST of CsaV3_1G027840 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G027840 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L786\|A0A0A0L786_CUCSA	2.7e-35	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G346920 PE=4 SV=1	[more]
tr\|A0A0A0LA45\|A0A0A0LA45_CUCSA	8.4e-29	81.69	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G346910 PE=4 SV=1	[more]
tr\|A0A1S3C5C8\|A0A1S3C5C8_CUCME	5.4e-28	80.28	uncharacterized protein LOC103496842 OS=Cucumis melo OX=3656 GN=LOC103496842 PE=...	[more]
tr\|A0A1S3C5Z5\|A0A1S3C5Z5_CUCME	7.9e-27	87.32	uncharacterized protein LOC103496843 OS=Cucumis melo OX=3656 GN=LOC103496843 PE=...	[more]
tr\|A0A072UXZ4\|A0A072UXZ4_MEDTR	2.5e-25	72.46	Cold-regulated protein, putative OS=Medicago truncatula OX=3880 GN=25489285 PE=4...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G027840.1	CsaV3_1G027840.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34673	FAMILY NOT NAMED	coord: 5..71

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G027840	Silver-seed gourd	carcucB0042
CsaV3_1G027840	Silver-seed gourd	carcucB0142
CsaV3_1G027840	Cucumber (Gy14) v2	cgybcucB001
CsaV3_1G027840	Cucurbita maxima (Rimu)	cmacucB0067
CsaV3_1G027840	Cucurbita maxima (Rimu)	cmacucB0111
CsaV3_1G027840	Cucurbita moschata (Rifu)	cmocucB0054
CsaV3_1G027840	Cucurbita moschata (Rifu)	cmocucB0100
CsaV3_1G027840	Cucurbita pepo (Zucchini)	cpecucB0429
CsaV3_1G027840	Cucurbita pepo (Zucchini)	cpecucB0796
CsaV3_1G027840	Wild cucumber (PI 183967)	cpicucB011
CsaV3_1G027840	Bottle gourd (USVL1VR-Ls)	cuclsiB073
CsaV3_1G027840	Melon (DHL92) v3.5.1	cucmeB054
CsaV3_1G027840	Melon (DHL92) v3.6.1	cucmedB052
CsaV3_1G027840	Watermelon (Charleston Gray)	cucwcgB074
CsaV3_1G027840	Watermelon (97103) v1	cucwmB091
CsaV3_1G027840	Watermelon (97103) v2	cucwmbB063
CsaV3_1G027840	Wax gourd	cucwgoB104