CsaV3_1G025500 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G025500
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionProtein TIC 214
Locationchr1 : 14139818 .. 14145742 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCACAATATTTTTTTTATACATGTCAAAGTGACGGAAAAGACCGAATAGTTTTTACATATCCACCTAGTGTAGCAACTTTTTTCGAACTGATAGAAAAAAAGATATCTTTGTTTTCAACAGAAAAACTTTTTTATGATGAATTCGATAATCCTTGGAAGTCTTTGAATGAACAAAAAAAAAGAATTTTAAACAAAATAGTTATAACTAGAATTCTACTTCTCGATAAGGGATCCCCAACTCTAGTTGGAGATGTACTGCAAAAAAGGACTCAATTATGTAATGATCAAACTAAAAAAGAATATTTACCAAAAATATATGATCCGTTGTTGAGTGGTCCTTACCAGAGATGAATCAATTTATGTTTAGGATTCTCAATACTAAATGAAACTTCTAGAAAAAATGATAGTGAGAACATTTGGACAAATAAGATTCATGCTATTGTTCATAATAATAACAACTGTTTCTTCGATGGAGTTACAATTCCTTACAAGGCTAACGCAAGTGATCAAAACTCGATTGAATTAACAGAAATCAGTAAAAAAATTTCCTCGCTGGTCATACAAGTTAATCAAGGAGATAGAACAAGTGTACGACATAACCGATGGAGAGCTCGTGTTAGATTATCAAATTCGTTCAAGAAAATGCAAACGTGTAGTAATTTTAAGTGACCTTAACAAAATTAAGAAGATTTCTACTTCTACTTCGACTAATGAGATTAAGTCGAAGGACGAACCAAAGGACGAACCAATGGAACAGGCTATTATACGCTATGCCAAGCAATGGGATTTTCGTCGAGAGATAATCAAAGGCTCTATGCGTGCTCAACGACGTAAAATGGGTATTTATCAACTGTTTCAAGGTGCAAATTCTTATCTTTTCTTGGACAGACACAATTTTTTTTTTTCTGATTTTTGTATTTATATTCCTAGACTAATGGAAAAACTTGATAGACTTCGGATACGGACACCTCATTTTTTTCGTATGTTTGTCTGTAATGAATAATTGTAAATTCAAGTAACAATTCATACATCTTTGTCACTTTATTTTTGATTTTAGGGAAAGATTCTTGAGTCTCTTAAGTTAAATAAACTAGGCAGAAAATGCTGATATGTATGTATTGTTATTATCTATTTTTATCGTTTTATTTCTTTTTTTTTTTTTTACAAAAATTTAGTCAAATAATAATATTGAGGTAGTAAAATTTCAATCAAGTAAATCTTTTTAATGATTTCTTATGAGTCCTTGGTACTCGAAGAAGTGTGAAACTCGTGAATCCATTCTATGAAGAAATTGAAAAATGGAGATTCTTAATTATTCGTAATTAATTATTTCTTAATTTATTTTATAGAAATTCCCAAAAATCTCTCCATATTTCTATTATATAGAAAATATCTATATATAGAGAAATAAATATTGCACTCATACAAAAAAAATGTTATTGATCCAATATATACAATAAAATATGGGTTTAAATAAATTGAAGTATTGCTAAGACTTTTTCAAAAACTACCCATGTCATAAGAGTATAGATTACTATGGACCAACTAACCCAATGACTATACATGATTCCATAAATGAATCAATTACATACCAGTTCCAAGAAATTAGAGGTTATGGTAAAACTTCGTTTAAAACGATGTGGTAGAAAGCAACGTGCGACTTGAAGGACATGATCCACTGTGGATTCTTACACCCACCATTTTTAGGAATGAAGATGCTCTTGACTCGACATAGTTTGTTCGGTTGCACTGAGCTCTGTTTTTTTTAGGGTTTTGATGTAACATAGTACATGATGGAGCTCGAGTAGAAAGTATTGATTCATTTATCAAGGGCAGAGATCTAGGGTTAGTGTCAATCAATAAGTTAAAACTACTTCGTAAGTATAGGTTCGGTATACAAATCGAAAGGATCCAATTCGAACAAGTTTCAAATTCAAACATAAAATTTGATCAAAAGTGTATCACACGAGAATCCATTATTTATATGATTCTTTGATAAAAAGAAATCACAAAAAAATGGTATGTTGCTACCATTTTGAAACGATTAAAGATCACCGAAGTAATGTCTAAACCCAATGATTCAAGGCAAGGATAAAGGATCCCGGAACAAGTAAAAATCTTTTTCAATTGTCTCAATAACTAAACTAGATCAGAATGAAGAATCGAAATAGATTCTAACGGAGACAGGCAAAAATAAAGAGGTTAGAGACCGCTCAATAAATGAAATGCTTAAGCTTAAGGTTTTTTTCCTTTGCGTGAGAGTTATCCAACTTGAGTTATGGGGATAAGAATGAGTTTTTTTTTTCAAAAGAAAAAATTATTTAAATCATAGTCTAATTGATTTAATAATCTATGGATCTATTTGACATTAATTAGAATTCTATACATAACTTTGAATTTCCTCGAGCCGTACGAGGAGAAAACTTCTTATACGGTTCTGGGGGGGGTATTGTTAATTTACATCTATCCCAATGAGCTGTTTATCGAATCATTGCAATTGATGTTCGATCCCGAAGAGAAGGAAGAGATCTTCGTAAAGTGGGTTTTTATGATCCGATAAAGAATCAAACCTATTTAAATGTTCCTGCGATTCTATATTTCCTTGAAAAGGGTGCTCAACCTACAGGAACTGTTCATGATATTTTAAAGAAGGCAGGTGTTTTTACGGAACTTCACCTTAATCAATAACCGAAATTCCATTAATATTAATAAACGAGGGTGTGGATAACTTAACTTGTATATAGCTTTGACTAACCTTTTCTTTAGTATTTCCCCCCTCTCTTGTTCTATTCTTCCTATACATATTATCTTAAAGAAAATATTAACAAGATATTGAGGAATTGTCCATACGTAAAATCATAATTATTGATACGGGTCTTTTCCATGTAATACACATAAAATAGGGAATCTTTTGTTACAATAGAAGCGGAAGTGATGTGGATTATTCAAGAATTGAAGTCGAGTTGCTTTATAAAAAGAAGATATCAATAAACTTCTATGAAATGGTTTCACGGGATTTAGCCACTTGTCTTGATCGTGGGATATCATTGAGAAATAGGACTTCGTGTTATCAAGGGATTTCTTGCGATTATTTCTAGTATGGAATGAGTCAATCATCCACTTTGGTATCTTATTGAACAAAAATGGTGATATTGTTCCTCCATTGATCAAGAATTTTGATTTTTGGGAAGTATAATGACCATCCAATAAGAAGGGTTTCAATTTTTTCAAATAAACGATTTGAAGACCTATTGATTCTAACAACTGATTGCAGAGTCGATTATTCGAACCTTTCAATTCATAAATGTGGGTCCGGACTATTATTGGTTGATAGAGAATCAAAGTTGATTTACCAATGAATTGCGAAATGCTATGGTTCTTCAATATGATTTCTTCATTTTGTCAAAAGTAATTCGCTGGATCATGCACCTTTTCGTAGTTATAACTAGAAAAGTACAGTTGGTTGTATCCAACTTATTCTTGAAATAAACAACTCGCACACACTCCCTTTCCAAAAAAAATCAATACACCAAGCACTACGCTTAGATTTATTGGATTTGTTGCTAAAATATCGGTATTAAATCCGAAACTCTCGGCGGATGGCCAATAACCCAAAGAAATGAAAGAATCGGTTACATTTTTCATATGATCTCCTTTTATAGATAAAACTAATTATCTATTTCTTTCTATTTCTTTTATTTTTTATTAATTTAAAATATGTTGTAAGAATCCTAAAAAAAAAGTTCCATTCGAGATTGGACTAAGAAAGGGAAGGAAGAAGGCGAGTCAGTATGCTAATGCCTCATCCTCAAATCAATCCTTCCCATAAGTTATTGTCCCAACGAATAAGTAATTGTCGGAGTGAAAGCTTCATATAATTCGAAAAAGCAGCAAGAGCAGCAAATCCAAGTAAATAAAATACGAAAAAAAATACGTAATTTTTTTAGGATTAAACAAAAGGATTCGCAAATAAAAGTGCTAATGCTACAACCAGTCCATAAATTGTTAAAGCTTCCATAAAAGCCAGACTAAGCAATAAAGTACCTCGGATTTTTCCCTCCGCCTCGGGTTGTCTCGCGATCCCTTCTACAGCTTGGCCCGCAGCAGTACCTTAACCAATCCCAGGTCCAATAGAAGGAAGCCCGACGACCAACCCAGCAACAATAACAGAAGAGGCAGAAATCAGTGGATTCATGATAAGTTCCTCATACTAAAATAAAAGAAAGAAATGGTTAATGATACAATGAACCAATGAATTATAACTTATTATTCCATCACTAAGATTTATCCAACTAAAAATTACGAATTGAAGTAATAATATTATTGAATCGTTCAAACTACTTCAATCTCTCTTTTTTAGTTCCTATCCATCCACGTCCTTTTTGTGAAGATCTTCCTATGTTATACTATTTAATTCTCGACGATGAATCGATTGGATAACTCTGATATTGTTATTCATGATATTTTAATACGATTCGATATCATCAAGATACAATGCATCCCAGATTAAATCTCGAGTTATTGCGAATAAAAAATGAAACGATGATATTATGGAAGTAAATATTCTCGCATTTATTGCTACTGCACTGTTCATTCTAGTTCAGACCGCCTTTTTACTTATAATATACGTAAAAACAATCAGTCAAAGTGATTAATTTGAATTAACCTTGCCGTTTTATTTCTTATCAATGATTGAAGATAAGAAAAATGAAAAGCATTAAAATTTTGCGTCTTAGATGAAATTGGCGGACTAGAATTATCAGTATTCTATGAGAGAAGTATTCTATGGTAGAAAGAAATATATGAATCCTTCTACCATACTATCTATTATTGTTATTGAAGTGTATAAAATTGTACTCTATAAAAATAGAGGTTGAATATTGATCAATTTGAATATAGATGAATATACAATATATATCTTTCTATTTATATATAGATATCATATCAATTACATATATGTAATATTAATCTAATATACACAATGGTCCAATTCTATTTCTTTGCTTCATAATTCATGTTGGGGTAAACCAGAAAAGTTTGGGTAGAGCTGGATCCGATCAAAATAGGATTAAAGGTGACACACAGCGTATTGTGTCGATTCTTTTGAGTAATATATCTGGAAATCCCTTTTCTTTTTTTTTCTTTTTATTTTTGGTGGAGATTTGAACCCGGACCTCTTGTCCACAGAAAGATACAGGTGTCAGTTGAGCTAAGCTTATGTTGGCTCTGGAATTCCCTATTGATTGCTTATTAACACCGTTTCGAACACAACGAGTACATTCCAAAATAACTGTTACTCGGGCATCTTTACCCTTGGCCATGAACCTCCCTTGGATTTTTGATTCACGCAACTCTTCCATTTTCCGATCCAAAATGAAGAAAAAAAAGAAAAATTGGTAACTCGAAATAAAATTATGAAAGATTTCATTACAATCAAATATTAAAATATAGTAATACAATGATTTCTAAATTTAGAATCGCAGTACAATTTTTCATTTAAGTATTTTGTATGATATTGTTGCCCTAGCCGTCACATTTTCATTTTCATTCTCACTCTTTTATTAATTCAATTTGAACCCGACGCCGGGTCCGAGTTTGACTGAGGTTGAGTCTATTTTGATTCTTTATAACTTATTCTAAGTCTAAAAACTCTAAAAAAAAGAAGGGGAAGGGGATTATTCAAAGATATTTGAGATGATAATGAAGCATTTCTATGTTTTCATTCTGAAAGGTGGAAGATAAGACGAAGAAAAGAATCGACCGTTTAAGTATTCATTTTTTTACTAAAAAAAGAATAGAAAGAGGGGCAAATTTATATGTCTATATATCTATCTATATTGATATATATTGAATTGCAGATACAGAAATGATAGAATCATTTTGGATCGGAACAAATACGGGTCTCCGATAGAGAGAGATTAA

mRNA sequence

ATGTCACAATATTTTTTTTATACATGTCAAAGTGACGGAAAAGACCGAATAAAATCAGTAAAAAAATTTCCTCGCTGGTCATACAAGTTAATCAAGGAGATAGAACAAGTGTACGACATAACCGATGGAGAGCTCGTGTTAGATTATCAAATTCGTTCAAGAAAATGCAAACGTGTAGTAATTTTAAGTGACCTTAACAAAATTAAGAAGATTTCTACTTCTACTTCGACTAATGAGATTAAGTCGAAGGACGAACCAAAGGACGAACCAATGGAACAGGCTATTATACGCTATGCCAAGCAATGGGATTTTCGTCGAGAGATAATCAAAGGCTCTATGCGTGCTCAACGACGTAAAATGGTACATGATGGAGCTCGAGTAGAAAGTATTGATTCATTTATCAAGGGCAGAGATCTAGGATACAGAAATGATAGAATCATTTTGGATCGGAACAAATACGGGTCTCCGATAGAGAGAGATTAA

Coding sequence (CDS)

ATGTCACAATATTTTTTTTATACATGTCAAAGTGACGGAAAAGACCGAATAAAATCAGTAAAAAAATTTCCTCGCTGGTCATACAAGTTAATCAAGGAGATAGAACAAGTGTACGACATAACCGATGGAGAGCTCGTGTTAGATTATCAAATTCGTTCAAGAAAATGCAAACGTGTAGTAATTTTAAGTGACCTTAACAAAATTAAGAAGATTTCTACTTCTACTTCGACTAATGAGATTAAGTCGAAGGACGAACCAAAGGACGAACCAATGGAACAGGCTATTATACGCTATGCCAAGCAATGGGATTTTCGTCGAGAGATAATCAAAGGCTCTATGCGTGCTCAACGACGTAAAATGGTACATGATGGAGCTCGAGTAGAAAGTATTGATTCATTTATCAAGGGCAGAGATCTAGGATACAGAAATGATAGAATCATTTTGGATCGGAACAAATACGGGTCTCCGATAGAGAGAGATTAA

Protein sequence

MSQYFFYTCQSDGKDRIKSVKKFPRWSYKLIKEIEQVYDITDGELVLDYQIRSRKCKRVVILSDLNKIKKISTSTSTNEIKSKDEPKDEPMEQAIIRYAKQWDFRREIIKGSMRAQRRKMVHDGARVESIDSFIKGRDLGYRNDRIILDRNKYGSPIERD
Homology
[Close]
BLAST of CsaV3_1G025500 vs. NCBI nr
Match: AVE15390.1 (Ycf1 (chloroplast) [Cucumis sativus var. sativus])

HSP 1 Score: 136.3 bits (342), Expect = 8.9e-29
Identity = 91/188 (48.40%), Postives = 91/188 (48.40%), Query Frame = 0 

Query: 21  KKFPRWSYKLIKEIEQVYDITDGELVLDYQIRSRKCKRVVILSDLNKIKKISTST----- 80
           KK PRWSYKLIKEIEQVYDITDGELVLDYQIRSRKCKRVVILSDLNKIKKISTST     
Sbjct: 536 KKVPRWSYKLIKEIEQVYDITDGELVLDYQIRSRKCKRVVILSDLNKIKKISTSTXXXXX 595

Query: 81  ------------------------------------------------------------ 121
                                                                       
Sbjct: 596 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 655

[Close]
BLAST of CsaV3_1G025500 vs. NCBI nr
Match: ASY97524.1 (Ycf1 (chloroplast) [Cucumis sativus var. hardwickii])

HSP 1 Score: 134.4 bits (337), Expect = 3.4e-28
Identity = 87/174 (50.00%), Postives = 88/174 (50.57%), Query Frame = 0 

Query: 21  KKFPRWSYKLIKEIEQVYDITDGELVLDYQIRSRKCKRVVILSDLNKIKKISTST----- 80
           KK PRWSY LIKEIEQVYDITDGELVLDYQIRSRKCKRVVIL+DLNKIKKISTST     
Sbjct: 536 KKVPRWSYNLIKEIEQVYDITDGELVLDYQIRSRKCKRVVILTDLNKIKKISTSTXXXXX 595

Query: 81  ------------------------------------------------------------ 121
                                                                       
Sbjct: 596 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 655

[Close]
BLAST of CsaV3_1G025500 vs. NCBI nr
Match: YP_247658.1 (hypothetical protein CsCp113 [Cucumis sativus] >CAJ00817.1 hypothetical protein CsCp113 (chloroplast) [Cucumis sativus])

HSP 1 Score: 133.3 bits (334), Expect = 7.5e-28
Identity = 91/196 (46.43%), Postives = 91/196 (46.43%), Query Frame = 0 

Query: 21  KKFPRWSYKLIKEIEQVYDITDGELVLDYQIRSRKCKRVVILSDLNKIKKISTST----- 80
           KK PRWSYKLIKEIEQVYDITDGELVLDYQIRSRKCKRVVILSDLNKIKKISTST     
Sbjct: 536 KKVPRWSYKLIKEIEQVYDITDGELVLDYQIRSRKCKRVVILSDLNKIKKISTSTXXXXX 595

Query: 81  ------------------------------------------------------------ 121
                                                                       
Sbjct: 596 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 655

[Close]
BLAST of CsaV3_1G025500 vs. NCBI nr
Match: AAZ94706.1 (hypothetical protein (chloroplast) [Cucumis sativus])

HSP 1 Score: 131.0 bits (328), Expect = 3.7e-27
Identity = 90/196 (45.92%), Postives = 90/196 (45.92%), Query Frame = 0 

Query: 21  KKFPRWSYKLIKEIEQVYDITDGELVLDYQIRSRKCKRVVILSDLNKIKKISTST----- 80
           KK PRWSYKLIKEIEQVYDITDGELVLDYQIRSRKCKRVVILSDLNKIKKISTST     
Sbjct: 536 KKVPRWSYKLIKEIEQVYDITDGELVLDYQIRSRKCKRVVILSDLNKIKKISTSTXXXXX 595

Query: 81  ------------------------------------------------------------ 121
                                                                       
Sbjct: 596 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 655

[Close]
BLAST of CsaV3_1G025500 vs. NCBI nr
Match: Q4VZL0.2 (RecName: Full=Protein TIC 214; AltName: Full=Translocon at the inner envelope membrane of chloroplasts 214; Short=AtTIC214 >ABI97471.1 hypothetical chloroplast RF1 (chloroplast) [Cucumis sativus] >ABI98801.1 hypothetical chloroplast RF1 (chloroplast) [Cucumis sativus] >ARQ16135.1 hypothetical chloroplast RF1 (chloroplast) [Cucumis sativus] >ARQ16218.1 hypothetical chloroplast RF1 (chloroplast) [Cucumis sativus] >ARQ16301.1 hypothetical chloroplast RF1 (chloroplast) [Cucumis sativus] >ARQ16384.1 hypothetical chloroplast RF1 (chloroplast) [Cucumis sativus])

HSP 1 Score: 131.0 bits (328), Expect = 3.7e-27
Identity = 90/196 (45.92%), Postives = 90/196 (45.92%), Query Frame = 0 

Query: 21  KKFPRWSYKLIKEIEQVYDITDGELVLDYQIRSRKCKRVVILSDLNKIKKISTST----- 80
           KK PRWSYKLIKEIEQVYDITDGELVLDYQIRSRKCKRVVILSDLNKIKKISTST     
Sbjct: 536 KKVPRWSYKLIKEIEQVYDITDGELVLDYQIRSRKCKRVVILSDLNKIKKISTSTXXXXX 595

Query: 81  ------------------------------------------------------------ 121
                                                                       
Sbjct: 596 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 655

[Close]
BLAST of CsaV3_1G025500 vs. TAIR10
Match: ATCG01130.1 (Ycf1 protein)

HSP 1 Score: 85.5 bits (210), Expect = 3.3e-17
Identity = 48/101 (47.52%), Postives = 67/101 (66.34%), Query Frame = 0 

Query: 21  KKFPRWSYKLIKEIEQVYDITDGELVLDYQIRSRKCKRVVILSDLNKIKKISTSTSTNEI 80
           KK PRWSYKLI E+E++    +  + ++  IRSRK KRVV+ +D     +I T+   N+ 
Sbjct: 602 KKVPRWSYKLISELEELEGENEENVPMEPGIRSRKAKRVVVFTDKEPHGEIYTNLKDNQN 661

Query: 81  KSKDEXXXXXMEQAIIRYAKQWDFRREIIKGSMRAQRRKMV 122
             +++      E A+IRY++Q DFRREIIKGSMR+QRRK V
Sbjct: 662 SDQND------EMALIRYSQQSDFRREIIKGSMRSQRRKTV 696


HSP 2 Score: 39.7 bits (91), Expect = 2.1e-03
Identity = 16/17 (94.12%), Postives = 17/17 (100.00%), Query Frame = 0 

Query: 1   MSQYFFYTCQSDGKDRI 18
           MSQYFFYTCQSDGK+RI
Sbjct: 381 MSQYFFYTCQSDGKERI 397

[Close]
BLAST of CsaV3_1G025500 vs. Swiss-Prot
Match: sp|Q4VZL0|TI214_CUCSA (Protein TIC 214 OS=Cucumis sativus OX=3659 GN=TIC214 PE=3 SV=2)

HSP 1 Score: 131.0 bits (328), Expect = 1.2e-29
Identity = 90/196 (45.92%), Postives = 90/196 (45.92%), Query Frame = 0 

Query: 21  KKFPRWSYKLIKEIEQVYDITDGELVLDYQIRSRKCKRVVILSDLNKIKKISTST----- 80
           KK PRWSYKLIKEIEQVYDITDGELVLDYQIRSRKCKRVVILSDLNKIKKISTST     
Sbjct: 536 KKVPRWSYKLIKEIEQVYDITDGELVLDYQIRSRKCKRVVILSDLNKIKKISTSTXXXXX 595

Query: 81  ------------------------------------------------------------ 121
                                                                       
Sbjct: 596 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 655


HSP 2 Score: 41.2 bits (95), Expect = 1.3e-02
Identity = 17/17 (100.00%), Postives = 17/17 (100.00%), Query Frame = 0 

Query: 1   MSQYFFYTCQSDGKDRI 18
           MSQYFFYTCQSDGKDRI
Sbjct: 354 MSQYFFYTCQSDGKDRI 370

[Close]
BLAST of CsaV3_1G025500 vs. Swiss-Prot
Match: sp|Q2PMP0|TI214_SOYBN (Protein TIC 214 OS=Glycine max OX=3847 GN=TIC214 PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.6e-16
Identity = 54/102 (52.94%), Postives = 67/102 (65.69%), Query Frame = 0 

Query: 21  KKFPRWSYKLIKEIEQVYDITDGELVLDYQIRSRKCKRVVILSDLNK-IKKISTSTSTNE 80
           KK PRWSYK I E+EQ+    + E   +YQIRSRK KRVVIL++ +K  KK  T   T +
Sbjct: 595 KKVPRWSYKFIDELEQLEGKNEAE---NYQIRSRKAKRVVILTNKSKFFKKYDTYNPTGD 654

Query: 81  IKSKDEXXXXXMEQAIIRYAKQWDFRREIIKGSMRAQRRKMV 122
               D       E A+IRY++Q DFRR+IIKGS+RAQRRK V
Sbjct: 655 ---TDNAEKKKNELALIRYSQQSDFRRDIIKGSIRAQRRKTV 690

[Close]
BLAST of CsaV3_1G025500 vs. Swiss-Prot
Match: sp|Q09WW0|TI214_MORIN (Protein TIC 214 OS=Morus indica OX=248361 GN=TIC214 PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.0e-16
Identity = 52/102 (50.98%), Postives = 65/102 (63.73%), Query Frame = 0 

Query: 21  KKFPRWSYKLIKEIEQVYDITDGELVLDYQIRSRKCKRVVILS-DLNKIKKISTSTSTNE 80
           KK P+WSYKLI ++EQ     +  L  D QIRSRKCKRV+I + +L      S S  TN 
Sbjct: 616 KKIPQWSYKLIDDLEQEEGENEEALGTDSQIRSRKCKRVLIFNHELENTNGYSNSQDTNN 675

Query: 81  IKSKDEXXXXXMEQAIIRYAKQWDFRREIIKGSMRAQRRKMV 122
              +D+        A+IRY++Q DFRR+IIKGSMRAQRRK V
Sbjct: 676 NDERDDI-------ALIRYSQQSDFRRDIIKGSMRAQRRKTV 710

[Close]
BLAST of CsaV3_1G025500 vs. Swiss-Prot
Match: sp|A4QKG5|TI214_BARVE (Protein TIC 214 OS=Barbarea verna OX=50458 GN=TIC214 PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.5e-16
Identity = 48/101 (47.52%), Postives = 66/101 (65.35%), Query Frame = 0 

Query: 21  KKFPRWSYKLIKEIEQVYDITDGELVLDYQIRSRKCKRVVILSDLNKIKKISTSTSTNEI 80
           KK PRWSYKLI E+E +    +  + ++  IRSRK KRVV+ +D     +I T+   N+ 
Sbjct: 601 KKVPRWSYKLISELEDLEGENEENVTMEPGIRSRKAKRVVVFTDKEPHNEIYTNLKDNQN 660

Query: 81  KSKDEXXXXXMEQAIIRYAKQWDFRREIIKGSMRAQRRKMV 122
             +++      E A+IRY++Q DFRREIIKGSMR+QRRK V
Sbjct: 661 SDQND------EMALIRYSQQSDFRREIIKGSMRSQRRKTV 695

[Close]
BLAST of CsaV3_1G025500 vs. Swiss-Prot
Match: sp|P56785|TI214_ARATH (Protein TIC 214 OS=Arabidopsis thaliana OX=3702 GN=TIC214 PE=1 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 5.9e-16
Identity = 48/101 (47.52%), Postives = 67/101 (66.34%), Query Frame = 0 

Query: 21  KKFPRWSYKLIKEIEQVYDITDGELVLDYQIRSRKCKRVVILSDLNKIKKISTSTSTNEI 80
           KK PRWSYKLI E+E++    +  + ++  IRSRK KRVV+ +D     +I T+   N+ 
Sbjct: 602 KKVPRWSYKLISELEELEGENEENVPMEPGIRSRKAKRVVVFTDKEPHGEIYTNLKDNQN 661

Query: 81  KSKDEXXXXXMEQAIIRYAKQWDFRREIIKGSMRAQRRKMV 122
             +++      E A+IRY++Q DFRREIIKGSMR+QRRK V
Sbjct: 662 SDQND------EMALIRYSQQSDFRREIIKGSMRSQRRKTV 696

[Close]
BLAST of CsaV3_1G025500 vs. TrEMBL
Match: tr|A0A286SB96|A0A286SB96_CUCSA (Protein TIC 214 OS=Cucumis sativus var. hardwickii OX=319220 GN=ycf1 PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 2.2e-28
Identity = 87/174 (50.00%), Postives = 88/174 (50.57%), Query Frame = 0 

Query: 21  KKFPRWSYKLIKEIEQVYDITDGELVLDYQIRSRKCKRVVILSDLNKIKKISTST----- 80
           KK PRWSY LIKEIEQVYDITDGELVLDYQIRSRKCKRVVIL+DLNKIKKISTST     
Sbjct: 536 KKVPRWSYNLIKEIEQVYDITDGELVLDYQIRSRKCKRVVILTDLNKIKKISTSTXXXXX 595

Query: 81  ------------------------------------------------------------ 121
                                                                       
Sbjct: 596 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 655

[Close]
BLAST of CsaV3_1G025500 vs. TrEMBL
Match: tr|A0A1X9Q205|A0A1X9Q205_CUCSA (Protein TIC 214 OS=Cucumis sativus OX=3659 GN=ycf1 PE=3 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.5e-27
Identity = 90/196 (45.92%), Postives = 90/196 (45.92%), Query Frame = 0 

Query: 21  KKFPRWSYKLIKEIEQVYDITDGELVLDYQIRSRKCKRVVILSDLNKIKKISTST----- 80
           KK PRWSYKLIKEIEQVYDITDGELVLDYQIRSRKCKRVVILSDLNKIKKISTST     
Sbjct: 536 KKVPRWSYKLIKEIEQVYDITDGELVLDYQIRSRKCKRVVILSDLNKIKKISTSTXXXXX 595

Query: 81  ------------------------------------------------------------ 121
                                                                       
Sbjct: 596 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 655

[Close]
BLAST of CsaV3_1G025500 vs. TrEMBL
Match: tr|A0A218KG90|A0A218KG90_CUCSA (Protein TIC 214 OS=Cucumis sativus var. hardwickii OX=319220 GN=ycf1 PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 4.2e-27
Identity = 89/196 (45.41%), Postives = 90/196 (45.92%), Query Frame = 0 

Query: 21  KKFPRWSYKLIKEIEQVYDITDGELVLDYQIRSRKCKRVVILSDLNKIKKISTST----- 80
           KK PRWSY LIKEIEQVYDITDGELVLDYQIRSRKCKRVVIL+DLNKIKKISTST     
Sbjct: 536 KKVPRWSYNLIKEIEQVYDITDGELVLDYQIRSRKCKRVVILTDLNKIKKISTSTXXXXX 595

Query: 81  ------------------------------------------------------------ 121
                                                                       
Sbjct: 596 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 655

[Close]
BLAST of CsaV3_1G025500 vs. TrEMBL
Match: tr|A0A221HV43|A0A221HV43_9ERIC (Protein TIC 214 OS=Gordonia fruticosa OX=182312 GN=ycf1 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.5e-16
Identity = 60/127 (47.24%), Postives = 79/127 (62.20%), Query Frame = 0 

Query: 2   SQYFFYTCQSDGKDR------IKSV-KKFPRWSYKLIKEIEQVYDITDGELVLDYQIRSR 61
           +++ F   +SD  D+      IK + KK PRWSYKLI E+EQ    ++ E+ +DYQIRSR
Sbjct: 594 TKFLFNAIRSDLNDKKKKSIGIKEISKKVPRWSYKLINELEQQEGESEEEVPIDYQIRSR 653

Query: 62  KCKRVVILSDLNKIKKISTSTSTNEIKSKDEXXXXXMEQAIIRYAKQWDFRREIIKGSMR 121
           K KRVVI +D N+      +  TN    +DE         +IRY++Q DFRR+IIKGSMR
Sbjct: 654 KAKRVVIFTD-NRGNTDPNNKDTNNSNKRDEV-------VLIRYSQQSDFRRDIIKGSMR 712

[Close]
BLAST of CsaV3_1G025500 vs. TrEMBL
Match: tr|A0A2S0SRL5|A0A2S0SRL5_9ROSA (Ycf1 OS=Ulmus chenmoui OX=1737302 GN=ycf1 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.0e-16
Identity = 64/128 (50.00%), Postives = 83/128 (64.84%), Query Frame = 0 

Query: 3   QYFFYTCQSDGKD---RIKSV------KKFPRWSYKLIKEIEQVYDITDGELVLDYQIRS 62
           Q+FF T  +D  +   R K +      KK  RWSYKLI E+EQ+   TD  +VLD++IRS
Sbjct: 621 QFFFDTVLTDLNNKTIRTKPIAINEISKKVSRWSYKLINELEQMEGETDESVVLDHEIRS 680

Query: 63  RKCKRVVILSDLNKIKKISTSTSTNEIKSKDEXXXXXMEQAIIRYAKQWDFRREIIKGSM 122
           RKCKRVVI +    ++  +T T  N  +++  XXXXX E A+IRY++Q DFRR IIKGS 
Sbjct: 681 RKCKRVVIFNKNKNLQNQNTDTYHNFKETEXXXXXXXDEVALIRYSQQSDFRRNIIKGSR 740

The following BLAST results are available for this feature:
BLAST of CsaV3_1G025500 vs. NCBI nr
Match NameE-valueIdentityDescription
AVE15390.18.9e-2948.40Ycf1 (chloroplast) [Cucumis sativus var. sativus][more]
ASY97524.13.4e-2850.00Ycf1 (chloroplast) [Cucumis sativus var. hardwickii][more]
YP_247658.17.5e-2846.43hypothetical protein CsCp113 [Cucumis sativus] >CAJ00817.1 hypothetical protein ... [more]
AAZ94706.13.7e-2745.92hypothetical protein (chloroplast) [Cucumis sativus][more]
Q4VZL0.23.7e-2745.92RecName: Full=Protein TIC 214; AltName: Full=Translocon at the inner envelope me... [more]
BLAST of CsaV3_1G025500 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG01130.13.3e-1747.52Ycf1 protein[more]
BLAST of CsaV3_1G025500 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q4VZL0|TI214_CUCSA1.2e-2945.92Protein TIC 214 OS=Cucumis sativus OX=3659 GN=TIC214 PE=3 SV=2[more]
sp|Q2PMP0|TI214_SOYBN1.6e-1652.94Protein TIC 214 OS=Glycine max OX=3847 GN=TIC214 PE=3 SV=1[more]
sp|Q09WW0|TI214_MORIN2.0e-1650.98Protein TIC 214 OS=Morus indica OX=248361 GN=TIC214 PE=3 SV=1[more]
sp|A4QKG5|TI214_BARVE3.5e-1647.52Protein TIC 214 OS=Barbarea verna OX=50458 GN=TIC214 PE=3 SV=1[more]
sp|P56785|TI214_ARATH5.9e-1647.52Protein TIC 214 OS=Arabidopsis thaliana OX=3702 GN=TIC214 PE=1 SV=1[more]
BLAST of CsaV3_1G025500 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A286SB96|A0A286SB96_CUCSA2.2e-2850.00Protein TIC 214 OS=Cucumis sativus var. hardwickii OX=319220 GN=ycf1 PE=3 SV=1[more]
tr|A0A1X9Q205|A0A1X9Q205_CUCSA2.5e-2745.92Protein TIC 214 OS=Cucumis sativus OX=3659 GN=ycf1 PE=3 SV=1[more]
tr|A0A218KG90|A0A218KG90_CUCSA4.2e-2745.41Protein TIC 214 OS=Cucumis sativus var. hardwickii OX=319220 GN=ycf1 PE=3 SV=1[more]
tr|A0A221HV43|A0A221HV43_9ERIC1.5e-1647.24Protein TIC 214 OS=Gordonia fruticosa OX=182312 GN=ycf1 PE=4 SV=1[more]
tr|A0A2S0SRL5|A0A2S0SRL5_9ROSA2.0e-1650.00Ycf1 OS=Ulmus chenmoui OX=1737302 GN=ycf1 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR008896TIC214
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G025500.1CsaV3_1G025500.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008896Protein TIC214PFAMPF05758Ycf1coord: 21..121
e-value: 9.9E-28
score: 96.4
NoneNo IPR availablePANTHERPTHR33163FAMILY NOT NAMEDcoord: 1..17
coord: 21..121

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G025500Wax gourdcucwgoB124
CsaV3_1G025500Silver-seed gourdcarcucB0037
CsaV3_1G025500Silver-seed gourdcarcucB0145
CsaV3_1G025500Silver-seed gourdcarcucB0146
CsaV3_1G025500Cucumber (Gy14) v2cgybcucB001
CsaV3_1G025500Cucurbita maxima (Rimu)cmacucB0064
CsaV3_1G025500Cucurbita maxima (Rimu)cmacucB0105
CsaV3_1G025500Cucurbita moschata (Rifu)cmocucB0050
CsaV3_1G025500Cucurbita moschata (Rifu)cmocucB0095
CsaV3_1G025500Cucurbita pepo (Zucchini)cpecucB0440
CsaV3_1G025500Cucurbita pepo (Zucchini)cpecucB0447
CsaV3_1G025500Cucurbita pepo (Zucchini)cpecucB0819
CsaV3_1G025500Bottle gourd (USVL1VR-Ls)cuclsiB078
CsaV3_1G025500Melon (DHL92) v3.5.1cucmeB060
CsaV3_1G025500Melon (DHL92) v3.6.1cucmedB057
CsaV3_1G025500Watermelon (Charleston Gray)cucwcgB092
CsaV3_1G025500Watermelon (97103) v1cucwmB109
CsaV3_1G025500Watermelon (97103) v2cucwmbB081